Wall clock time and date at job start Tue Mar 31 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32220 * 120.51111 * 2 1 4 4 C 1.31906 * 121.14217 * 180.02562 * 3 2 1 5 5 N 1.31751 * 122.19835 * 359.97438 * 4 3 2 6 6 C 1.32744 * 120.86896 * 359.77168 * 5 4 3 7 7 O 1.35280 * 120.61509 * 180.24287 * 6 5 4 8 8 C 1.39769 * 120.51032 * 180.02562 * 2 1 3 9 9 C 1.47536 * 120.97978 * 359.95967 * 8 2 1 10 10 O 1.21589 * 119.99655 * 89.99916 * 9 8 2 11 11 N 1.34774 * 120.00011 * 270.00169 * 9 8 2 12 12 C 1.47484 * 127.03387 * 0.02562 * 11 9 8 13 13 C 1.54007 * 107.08285 * 154.50986 * 12 11 9 14 14 H 1.08993 * 110.32463 * 242.41201 * 13 12 11 15 15 N 1.46500 * 110.32427 * 120.20117 * 13 12 11 16 16 C 1.36930 * 120.00426 * 86.45147 * 15 13 12 17 17 H 1.08009 * 119.99883 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99564 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00276 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47196 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47312 * 119.99674 * 20 18 16 23 23 H 1.48492 * 109.47331 * 240.00154 * 20 18 16 24 24 C 1.54611 * 105.04344 * 1.30849 * 13 12 11 25 25 C 1.52998 * 110.74013 * 140.18598 * 24 13 12 26 26 C 1.53002 * 110.73830 * 263.32628 * 24 13 12 27 27 C 1.48118 * 127.03156 * 179.97438 * 11 9 8 28 28 H 1.08993 * 109.47413 * 269.98065 * 1 2 3 29 29 H 1.09004 * 109.47130 * 29.97997 * 1 2 3 30 30 H 1.09003 * 109.47206 * 149.97236 * 1 2 3 31 31 H 1.08005 * 118.90044 * 180.02562 * 4 3 2 32 32 H 0.96706 * 113.99605 * 270.23949 * 7 6 5 33 33 H 1.09000 * 109.91322 * 35.14794 * 12 11 9 34 34 H 1.08997 * 109.91328 * 273.87427 * 12 11 9 35 35 H 0.97003 * 119.99805 * 266.45265 * 15 13 12 36 36 H 0.97003 * 119.99662 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47598 * 59.99925 * 25 24 13 38 38 H 1.09000 * 109.47375 * 179.97438 * 25 24 13 39 39 H 1.09004 * 109.47203 * 299.99825 * 25 24 13 40 40 H 1.09005 * 109.46760 * 60.00772 * 26 24 13 41 41 H 1.08998 * 109.47298 * 179.97438 * 26 24 13 42 42 H 1.08990 * 109.47449 * 300.00356 * 26 24 13 43 43 H 1.08996 * 110.66106 * 100.89622 * 27 11 9 44 44 H 1.08999 * 110.80476 * 337.84373 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1536 -0.0005 5 7 4.2115 0.0466 -0.0005 6 6 3.6233 -1.1435 0.0045 7 8 4.3618 -2.2769 0.0094 8 6 2.2165 -1.2042 -0.0005 9 6 1.5123 -2.5006 -0.0002 10 8 1.2215 -3.0347 -1.0531 11 7 1.1914 -3.0929 1.1671 12 6 1.4664 -2.5870 2.5249 13 6 0.4105 -3.2050 3.4604 14 1 -0.2045 -2.4233 3.9059 15 7 1.0597 -4.0007 4.5052 16 6 1.4841 -3.3992 5.6597 17 1 1.3398 -2.3380 5.8004 18 6 2.0987 -4.1532 6.6500 19 7 2.2741 -5.4464 6.4788 20 14 2.6769 -3.3327 8.2253 21 1 2.3639 -1.8820 8.1716 22 1 1.9828 -3.9455 9.3863 23 1 4.1430 -3.5181 8.3708 24 6 -0.4497 -4.1123 2.5507 25 6 -0.8049 -5.4168 3.2669 26 6 -1.7162 -3.3822 2.0994 27 6 0.4893 -4.3844 1.3487 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 4.0087 2.1049 -0.0001 32 1 4.5796 -2.6082 -0.8727 33 1 1.3849 -1.5002 2.5398 34 1 2.4646 -2.8913 2.8393 35 1 1.1890 -4.9538 4.3790 36 1 2.7033 -5.9734 7.1709 37 1 -1.3675 -5.1923 4.1731 38 1 -1.4107 -6.0395 2.6085 39 1 0.1100 -5.9480 3.5295 40 1 -1.4404 -2.4863 1.5430 41 1 -2.3061 -4.0391 1.4602 42 1 -2.3042 -3.1008 2.9729 43 1 1.1983 -5.1774 1.5864 44 1 -0.0877 -4.6397 0.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996178517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:52 Heat of formation + Delta-G solvation = -27.461261 kcal Electronic energy + Delta-G solvation = -28305.161341 eV Core-core repulsion = 24450.773078 eV Total energy + Delta-G solvation = -3854.388263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60367 -41.14788 -39.33889 -38.91235 -35.84552 -35.39006 -34.61321 -33.03269 -32.66146 -29.93079 -29.35052 -28.14355 -27.79882 -25.96033 -25.55533 -23.99733 -23.25843 -21.04706 -20.15593 -20.09503 -19.28190 -19.13868 -18.38763 -17.40942 -17.25411 -16.84356 -16.42032 -16.09549 -15.79831 -15.46979 -15.33916 -14.85363 -14.79685 -14.47641 -14.35553 -13.93329 -13.84539 -13.73263 -13.41461 -13.20868 -13.17037 -13.11301 -12.87792 -12.74480 -12.59511 -12.50380 -12.15975 -12.02487 -11.88890 -11.52209 -11.44187 -11.32340 -11.14965 -10.99054 -10.67545 -10.57417 -9.82259 -9.04463 -7.94456 -5.22468 -0.58827 -0.30843 1.21303 1.47046 1.48620 1.56865 1.77837 2.10939 2.43910 2.55601 2.86321 3.07853 3.15419 3.37616 3.60739 3.71450 3.73974 3.90797 4.02054 4.04966 4.17553 4.27329 4.36909 4.53267 4.55927 4.59304 4.61648 4.74516 4.82852 4.87853 4.90614 4.98759 5.02116 5.11706 5.12994 5.16656 5.33456 5.43016 5.52709 5.60431 5.61264 6.24760 6.27680 6.35024 6.80177 6.83620 7.35916 8.09122 8.32638 9.28692 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.004652 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.528099 B = 6016.864275 C = 7119.206352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.227 3.773 3 N -0.530 5.530 4 C 0.337 3.663 5 N -0.557 5.557 6 C 0.392 3.608 7 O -0.482 6.482 8 C -0.262 4.262 9 C 0.602 3.398 10 O -0.565 6.565 11 N -0.593 5.593 12 C 0.093 3.907 13 C 0.172 3.828 14 H 0.071 0.929 15 N -0.723 5.723 16 C -0.238 4.238 17 H 0.076 0.924 18 C -0.068 4.068 19 N -0.965 5.965 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.299 1.299 24 C -0.076 4.076 25 C -0.119 4.119 26 C -0.124 4.124 27 C 0.117 3.883 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.245 0.755 32 H 0.429 0.571 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.380 0.620 36 H 0.250 0.750 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 10.393 -15.124 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 N -0.246 5.246 4 C 0.051 3.949 5 N -0.283 5.283 6 C 0.204 3.796 7 O -0.293 6.293 8 C -0.271 4.271 9 C 0.389 3.611 10 O -0.445 6.445 11 N -0.323 5.323 12 C -0.033 4.033 13 C 0.061 3.939 14 H 0.089 0.911 15 N -0.364 5.364 16 C -0.369 4.369 17 H 0.094 0.906 18 C -0.261 4.261 19 N -0.615 5.615 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.227 1.227 24 C -0.078 4.078 25 C -0.177 4.177 26 C -0.181 4.181 27 C -0.004 4.004 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.261 0.739 32 H 0.293 0.707 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.216 0.784 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.810 11.096 -15.025 19.287 hybrid contribution 0.928 -1.217 0.718 1.691 sum -3.882 9.878 -14.306 17.813 Atomic orbital electron populations 1.21012 0.85253 1.05410 1.05283 1.22198 0.98951 0.85548 0.85222 1.68417 1.10584 1.28764 1.16830 1.25818 0.86237 0.96926 0.85932 1.68148 1.42986 0.98842 1.18279 1.19569 0.85728 0.86437 0.87826 1.84638 1.72480 1.36077 1.36098 1.21681 0.95157 0.96700 1.13587 1.17205 0.78016 0.83552 0.82346 1.90781 1.56559 1.66115 1.31075 1.48680 1.56064 1.22282 1.05278 1.23097 1.00556 0.98577 0.81109 1.21276 0.91207 0.93559 0.87818 0.91134 1.42764 1.69829 1.08147 1.15676 1.19616 1.29842 0.93311 0.94174 0.90579 1.25421 1.02775 0.96174 1.01697 1.69797 1.50252 1.06184 1.35290 0.85228 0.76954 0.78229 0.80283 1.19081 1.22110 1.22715 1.21872 0.95488 0.96709 0.93728 1.21512 1.00878 0.95396 0.99865 1.21687 0.94851 1.00046 1.01543 1.22622 0.94380 0.84537 0.98891 0.87676 0.87074 0.90234 0.73891 0.70731 0.91579 0.93648 0.78436 0.94121 0.92924 0.90716 0.94137 0.92446 0.90850 0.91696 0.92009 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.85 71.23 0.70 -1.33 16 2 C 0.23 5.41 6.86 42.87 0.29 5.70 16 3 N -0.53 -11.77 10.36 -187.21 -1.94 -13.71 16 4 C 0.34 6.87 12.27 180.86 2.22 9.08 16 5 N -0.56 -14.29 10.45 -312.04 -3.26 -17.55 16 6 C 0.39 11.04 7.85 85.18 0.67 11.71 16 7 O -0.48 -13.17 13.10 -85.65 -1.12 -14.29 16 8 C -0.26 -7.32 4.67 -19.83 -0.09 -7.41 16 9 C 0.60 18.53 5.58 86.70 0.48 19.01 16 10 O -0.57 -19.66 17.32 -4.00 -0.07 -19.73 16 11 N -0.59 -18.25 3.20 -813.15 -2.60 -20.86 16 12 C 0.09 3.17 6.54 86.53 0.57 3.73 16 13 C 0.17 6.07 3.10 45.88 0.14 6.21 16 14 H 0.07 2.45 7.83 -2.39 -0.02 2.43 16 15 N -0.72 -33.25 4.51 -318.74 -1.44 -34.69 16 16 C -0.24 -12.35 9.97 84.03 0.84 -11.51 16 17 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.96 -56.89 13.06 21.65 0.28 -56.61 16 20 Si 0.96 44.93 29.55 68.60 2.03 46.96 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 24 C -0.08 -2.17 0.93 -50.97 -0.05 -2.22 16 25 C -0.12 -3.56 7.82 71.98 0.56 -3.00 16 26 C -0.12 -2.73 8.49 71.98 0.61 -2.12 16 27 C 0.12 3.46 5.98 86.73 0.52 3.98 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.08 1.55 7.18 -2.39 -0.02 1.53 16 31 H 0.25 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.43 7.48 9.06 -74.05 -0.67 6.81 16 33 H 0.07 2.09 7.71 -2.39 -0.02 2.07 16 34 H 0.05 1.89 7.92 -2.39 -0.02 1.87 16 35 H 0.38 18.87 5.51 -92.71 -0.51 18.36 16 36 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.44 6.23 -2.38 -0.01 1.43 16 40 H 0.06 1.20 8.08 -2.38 -0.02 1.18 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 2.00 8.02 -2.39 -0.02 1.98 16 44 H 0.09 2.53 7.77 -2.39 -0.02 2.51 16 Total: -1.00 -69.45 366.64 -0.33 -69.78 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.14 Total: 32.14 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 7.93 Total: 28.57 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -8.96 Total: -143.42 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.19 Total: -34.02 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.45 -0.33 -69.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996178517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.315 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds