Wall clock time and date at job start Tue Mar 31 2020 13:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32213 * 120.50680 * 2 1 4 4 C 1.31912 * 121.14072 * 179.97438 * 3 2 1 5 5 N 1.31751 * 122.19439 * 0.02562 * 4 3 2 6 6 C 1.32744 * 120.87374 * 359.97438 * 5 4 3 7 7 O 1.35277 * 120.61512 * 179.97438 * 6 5 4 8 8 C 1.39768 * 120.50986 * 179.97438 * 2 1 3 9 9 C 1.47533 * 120.98104 * 359.97438 * 8 2 1 10 10 O 1.21590 * 119.99869 * 270.02185 * 9 8 2 11 11 N 1.34770 * 120.00175 * 90.02600 * 9 8 2 12 12 C 1.47022 * 125.64861 * 0.02562 * 11 9 8 13 13 C 1.54324 * 107.27074 * 181.02686 * 12 11 9 14 14 H 1.09007 * 110.71704 * 140.56213 * 13 12 11 15 15 N 1.46501 * 110.72020 * 263.83145 * 13 12 11 16 16 C 1.36939 * 119.99994 * 273.54796 * 15 13 12 17 17 H 1.08002 * 120.00224 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99959 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99926 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00204 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46825 * 90.00249 * 20 18 16 22 22 H 1.48503 * 109.47481 * 209.99957 * 20 18 16 23 23 H 1.48502 * 109.46971 * 330.00324 * 20 18 16 24 24 C 1.55153 * 102.94319 * 22.19379 * 13 12 11 25 25 C 1.53001 * 111.00319 * 82.57355 * 24 13 12 26 26 C 1.53002 * 111.00290 * 206.38117 * 24 13 12 27 27 C 1.47426 * 125.64999 * 179.72114 * 11 9 8 28 28 H 1.09001 * 109.46742 * 270.01714 * 1 2 3 29 29 H 1.08992 * 109.47639 * 30.01975 * 1 2 3 30 30 H 1.08997 * 109.47042 * 150.02490 * 1 2 3 31 31 H 1.08006 * 118.89869 * 180.02562 * 4 3 2 32 32 H 0.96698 * 113.99829 * 89.99750 * 7 6 5 33 33 H 1.08995 * 109.88750 * 300.44504 * 12 11 9 34 34 H 1.08998 * 109.88028 * 61.61157 * 12 11 9 35 35 H 0.96998 * 120.00044 * 93.54676 * 15 13 12 36 36 H 0.97000 * 119.99850 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47159 * 59.99884 * 25 24 13 38 38 H 1.08998 * 109.47070 * 179.97438 * 25 24 13 39 39 H 1.08998 * 109.47053 * 299.99927 * 25 24 13 40 40 H 1.09003 * 109.46847 * 60.00406 * 26 24 13 41 41 H 1.09003 * 109.46734 * 180.02562 * 26 24 13 42 42 H 1.08994 * 109.47305 * 300.00407 * 26 24 13 43 43 H 1.09008 * 110.36076 * 274.74050 * 27 11 9 44 44 H 1.08997 * 110.36920 * 37.06102 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0466 0.0005 6 6 3.6234 -1.1435 0.0006 7 8 4.3619 -2.2769 0.0001 8 6 2.2166 -1.2042 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2223 -3.0339 1.0552 11 7 1.1908 -3.0938 -1.1649 12 6 1.4806 -2.5626 -2.5048 13 6 0.9067 -3.5644 -3.5289 14 1 0.4530 -3.0392 -4.3695 15 7 1.9474 -4.4855 -3.9921 16 6 2.7510 -4.1372 -5.0448 17 1 2.6172 -3.1836 -5.5339 18 6 3.7367 -5.0103 -5.4841 19 7 4.5094 -4.6753 -6.4956 20 14 3.9676 -6.6600 -4.6388 21 1 3.1168 -7.6799 -5.3031 22 1 5.3925 -7.0682 -4.7305 23 1 3.5769 -6.5434 -3.2108 24 6 -0.1707 -4.3213 -2.7082 25 6 -1.4800 -3.5311 -2.6615 26 6 -0.4012 -5.7259 -3.2696 27 6 0.4957 -4.3859 -1.3089 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 4.0087 2.1050 0.0009 32 1 4.5769 -2.6065 0.8833 33 1 1.0033 -1.5907 -2.6296 34 1 2.5579 -2.4691 -2.6414 35 1 2.0673 -5.3422 -3.5531 36 1 5.1980 -5.2855 -6.8028 37 1 -1.8522 -3.3842 -3.6754 38 1 -2.2179 -4.0844 -2.0806 39 1 -1.3029 -2.5617 -2.1955 40 1 0.5301 -6.2908 -3.2286 41 1 -1.1613 -6.2341 -2.6761 42 1 -0.7368 -5.6532 -4.3040 43 1 1.2101 -5.2080 -1.2639 44 1 -0.2619 -4.4977 -0.5332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996178520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:55 Heat of formation + Delta-G solvation = -3.013998 kcal Electronic energy + Delta-G solvation = -28507.502410 eV Core-core repulsion = 24654.174260 eV Total energy + Delta-G solvation = -3853.328150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56868 -39.99145 -38.11907 -37.81960 -34.43417 -34.10906 -33.36542 -31.99114 -31.14163 -29.00192 -28.37301 -27.02890 -26.73368 -24.82782 -23.64588 -23.00838 -21.56885 -19.81575 -19.16468 -19.05928 -18.24171 -17.65938 -17.17418 -16.37230 -16.04266 -15.46990 -15.21916 -14.71168 -14.54585 -14.31847 -13.91825 -13.71479 -13.51661 -13.16057 -13.08928 -12.89704 -12.81241 -12.58193 -12.34660 -12.21659 -12.17086 -11.88142 -11.75302 -11.39970 -11.33602 -11.03338 -10.75334 -10.64391 -10.54104 -10.34097 -10.04494 -9.94283 -9.65008 -9.62187 -9.54156 -9.06714 -8.49354 -7.41061 -5.85923 -3.23384 0.42541 0.70525 2.43112 2.99913 3.09336 3.31475 3.33622 3.40313 3.45469 3.73611 4.04197 4.30805 4.51056 4.66358 4.74422 4.86116 4.93487 4.97424 5.08386 5.19581 5.25800 5.39482 5.44583 5.46292 5.57447 5.62153 5.68566 5.75234 5.87077 5.93943 5.97919 6.02393 6.06967 6.13999 6.19033 6.35640 6.40970 6.58704 6.60413 6.62025 7.17393 7.56905 7.78281 7.87429 8.07507 8.32478 9.09073 9.81511 9.99359 11.31796 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.005190 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.026830 B = 5394.211653 C = 6471.367223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.224 3.776 3 N -0.527 5.527 4 C 0.333 3.667 5 N -0.540 5.540 6 C 0.403 3.597 7 O -0.463 6.463 8 C -0.240 4.240 9 C 0.591 3.409 10 O -0.543 6.543 11 N -0.591 5.591 12 C 0.071 3.929 13 C 0.187 3.813 14 H 0.080 0.920 15 N -0.735 5.735 16 C -0.251 4.251 17 H 0.092 0.908 18 C 0.012 3.988 19 N -0.928 5.928 20 Si 0.879 3.121 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.092 4.092 25 C -0.129 4.129 26 C -0.127 4.127 27 C 0.118 3.882 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.206 0.794 32 H 0.412 0.588 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 7.491 13.555 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 N -0.243 5.243 4 C 0.046 3.954 5 N -0.265 5.265 6 C 0.215 3.785 7 O -0.271 6.271 8 C -0.249 4.249 9 C 0.377 3.623 10 O -0.421 6.421 11 N -0.322 5.322 12 C -0.055 4.055 13 C 0.075 3.925 14 H 0.098 0.902 15 N -0.377 5.377 16 C -0.380 4.380 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.575 5.575 20 Si 0.710 3.290 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.093 4.093 25 C -0.187 4.187 26 C -0.185 4.185 27 C -0.004 4.004 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.222 0.778 32 H 0.272 0.728 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.596 8.150 13.342 18.344 hybrid contribution 0.447 -1.976 0.935 2.231 sum -9.149 6.174 14.276 18.045 Atomic orbital electron populations 1.20896 0.87088 1.04584 1.04342 1.21745 0.97662 0.86006 0.86764 1.68279 1.10240 1.29270 1.16532 1.24955 0.86228 0.96149 0.88082 1.68062 1.42598 0.98668 1.17148 1.19397 0.85518 0.86019 0.87578 1.84727 1.72417 1.35788 1.34146 1.21703 0.95093 0.96749 1.11354 1.17122 0.78733 0.83427 0.83043 1.90796 1.55403 1.65387 1.30555 1.48355 1.56144 1.21809 1.05875 1.23296 1.02508 0.98064 0.81602 1.21168 0.88092 0.89990 0.93262 0.90182 1.42792 1.38440 1.18128 1.38372 1.19013 1.09809 1.03297 1.05912 0.89065 1.24641 0.97926 0.98073 0.97780 1.69693 1.22944 1.36870 1.27978 0.86639 0.77530 0.85535 0.79345 1.20857 1.21611 1.20350 1.22101 0.95546 0.97295 0.94381 1.21674 0.95402 0.99501 1.02083 1.21599 1.01475 0.94202 1.01213 1.22399 0.95658 0.85181 0.97129 0.88888 0.88933 0.89990 0.77766 0.72774 0.92570 0.90144 0.80158 0.92913 0.91920 0.92540 0.92786 0.92239 0.93043 0.91463 0.91261 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.85 36.01 0.35 -0.76 16 2 C 0.22 2.88 6.86 -81.86 -0.56 2.32 16 3 N -0.53 -6.53 10.36 -10.52 -0.11 -6.64 16 4 C 0.33 3.90 12.27 -92.09 -1.13 2.77 16 5 N -0.54 -7.65 10.45 -14.32 -0.15 -7.80 16 6 C 0.40 6.09 7.85 -16.19 -0.13 5.97 16 7 O -0.46 -6.92 13.10 -17.52 -0.23 -7.15 16 8 C -0.24 -3.54 4.85 -104.56 -0.51 -4.05 16 9 C 0.59 9.49 5.54 -12.47 -0.07 9.42 16 10 O -0.54 -9.82 17.36 5.29 0.09 -9.73 16 11 N -0.59 -9.30 3.31 -171.61 -0.57 -9.87 16 12 C 0.07 1.18 5.89 -3.06 -0.02 1.16 16 13 C 0.19 3.22 2.86 -66.10 -0.19 3.03 16 14 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 15 N -0.74 -16.01 4.41 -51.65 -0.23 -16.24 16 16 C -0.25 -6.67 10.46 -15.06 -0.16 -6.83 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 19 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 20 Si 0.88 21.61 27.74 -169.99 -4.71 16.89 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 24 C -0.09 -1.27 0.83 -152.24 -0.13 -1.39 16 25 C -0.13 -1.42 8.58 37.16 0.32 -1.10 16 26 C -0.13 -1.74 8.22 37.16 0.31 -1.43 16 27 C 0.12 1.76 5.82 -2.41 -0.01 1.74 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.84 7.18 -51.93 -0.37 0.47 16 31 H 0.21 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.41 4.05 9.06 45.56 0.41 4.47 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.63 8.04 -51.93 -0.42 1.21 16 35 H 0.36 7.96 3.96 -40.82 -0.16 7.80 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.58 7.91 -51.93 -0.41 0.17 16 40 H 0.06 0.92 6.38 -51.93 -0.33 0.59 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.12 7.99 -51.92 -0.41 0.71 16 44 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -34.06 364.75 -7.15 -41.21 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.50 Total: 10.37 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -2.02 Total: 11.10 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -0.28 Total: -68.20 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.14 Total: -16.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.06 -7.15 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996178520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.200 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds