Wall clock time and date at job start Tue Mar 31 2020 13:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32213 * 120.50680 * 2 1 4 4 C 1.31912 * 121.14072 * 179.97438 * 3 2 1 5 5 N 1.31751 * 122.19439 * 0.02562 * 4 3 2 6 6 C 1.32744 * 120.87374 * 359.97438 * 5 4 3 7 7 O 1.35277 * 120.61512 * 179.97438 * 6 5 4 8 8 C 1.39768 * 120.50986 * 179.97438 * 2 1 3 9 9 C 1.47533 * 120.98104 * 359.97438 * 8 2 1 10 10 O 1.21590 * 119.99869 * 270.02185 * 9 8 2 11 11 N 1.34770 * 120.00175 * 90.02600 * 9 8 2 12 12 C 1.47022 * 125.64861 * 0.02562 * 11 9 8 13 13 C 1.54324 * 107.27074 * 181.02686 * 12 11 9 14 14 H 1.09007 * 110.71704 * 140.56213 * 13 12 11 15 15 N 1.46501 * 110.72020 * 263.83145 * 13 12 11 16 16 C 1.36939 * 119.99994 * 273.54796 * 15 13 12 17 17 H 1.08002 * 120.00224 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99959 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99926 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00204 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46825 * 90.00249 * 20 18 16 22 22 H 1.48503 * 109.47481 * 209.99957 * 20 18 16 23 23 H 1.48502 * 109.46971 * 330.00324 * 20 18 16 24 24 C 1.55153 * 102.94319 * 22.19379 * 13 12 11 25 25 C 1.53001 * 111.00319 * 82.57355 * 24 13 12 26 26 C 1.53002 * 111.00290 * 206.38117 * 24 13 12 27 27 C 1.47426 * 125.64999 * 179.72114 * 11 9 8 28 28 H 1.09001 * 109.46742 * 270.01714 * 1 2 3 29 29 H 1.08992 * 109.47639 * 30.01975 * 1 2 3 30 30 H 1.08997 * 109.47042 * 150.02490 * 1 2 3 31 31 H 1.08006 * 118.89869 * 180.02562 * 4 3 2 32 32 H 0.96698 * 113.99829 * 89.99750 * 7 6 5 33 33 H 1.08995 * 109.88750 * 300.44504 * 12 11 9 34 34 H 1.08998 * 109.88028 * 61.61157 * 12 11 9 35 35 H 0.96998 * 120.00044 * 93.54676 * 15 13 12 36 36 H 0.97000 * 119.99850 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47159 * 59.99884 * 25 24 13 38 38 H 1.08998 * 109.47070 * 179.97438 * 25 24 13 39 39 H 1.08998 * 109.47053 * 299.99927 * 25 24 13 40 40 H 1.09003 * 109.46847 * 60.00406 * 26 24 13 41 41 H 1.09003 * 109.46734 * 180.02562 * 26 24 13 42 42 H 1.08994 * 109.47305 * 300.00407 * 26 24 13 43 43 H 1.09008 * 110.36076 * 274.74050 * 27 11 9 44 44 H 1.08997 * 110.36920 * 37.06102 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0466 0.0005 6 6 3.6234 -1.1435 0.0006 7 8 4.3619 -2.2769 0.0001 8 6 2.2166 -1.2042 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2223 -3.0339 1.0552 11 7 1.1908 -3.0938 -1.1649 12 6 1.4806 -2.5626 -2.5048 13 6 0.9067 -3.5644 -3.5289 14 1 0.4530 -3.0392 -4.3695 15 7 1.9474 -4.4855 -3.9921 16 6 2.7510 -4.1372 -5.0448 17 1 2.6172 -3.1836 -5.5339 18 6 3.7367 -5.0103 -5.4841 19 7 4.5094 -4.6753 -6.4956 20 14 3.9676 -6.6600 -4.6388 21 1 3.1168 -7.6799 -5.3031 22 1 5.3925 -7.0682 -4.7305 23 1 3.5769 -6.5434 -3.2108 24 6 -0.1707 -4.3213 -2.7082 25 6 -1.4800 -3.5311 -2.6615 26 6 -0.4012 -5.7259 -3.2696 27 6 0.4957 -4.3859 -1.3089 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 4.0087 2.1050 0.0009 32 1 4.5769 -2.6065 0.8833 33 1 1.0033 -1.5907 -2.6296 34 1 2.5579 -2.4691 -2.6414 35 1 2.0673 -5.3422 -3.5531 36 1 5.1980 -5.2855 -6.8028 37 1 -1.8522 -3.3842 -3.6754 38 1 -2.2179 -4.0844 -2.0806 39 1 -1.3029 -2.5617 -2.1955 40 1 0.5301 -6.2908 -3.2286 41 1 -1.1613 -6.2341 -2.6761 42 1 -0.7368 -5.6532 -4.3040 43 1 1.2101 -5.2080 -1.2639 44 1 -0.2619 -4.4977 -0.5332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996178520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:54 Heat of formation + Delta-G solvation = -29.749168 kcal Electronic energy + Delta-G solvation = -28508.661734 eV Core-core repulsion = 24654.174260 eV Total energy + Delta-G solvation = -3854.487474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62596 -41.23224 -39.38992 -38.93870 -35.89687 -35.41551 -34.66133 -33.11085 -32.98790 -29.95695 -29.78994 -28.12609 -27.85945 -26.00173 -25.32597 -24.00578 -23.08514 -21.04657 -20.61916 -20.11854 -19.44653 -19.26351 -18.42141 -17.48924 -17.32125 -16.82152 -16.40785 -16.22527 -16.01799 -15.41708 -15.24798 -14.94143 -14.62401 -14.54527 -14.42884 -13.99205 -13.87960 -13.76933 -13.63733 -13.53220 -13.24273 -13.17772 -12.93397 -12.79582 -12.73598 -12.50458 -12.27511 -11.98376 -11.90962 -11.63255 -11.52403 -11.34150 -11.17766 -11.03136 -10.69582 -10.57343 -9.81910 -9.36591 -8.04293 -5.37391 -0.59786 -0.31098 1.18641 1.33381 1.36230 1.42196 1.79544 2.10141 2.43472 2.44837 2.85624 3.06975 3.12651 3.24828 3.45221 3.55516 3.71865 3.73802 3.94694 4.02322 4.16557 4.21935 4.38615 4.42966 4.53034 4.56378 4.60750 4.71214 4.80970 4.85796 4.89398 4.93090 5.02800 5.08340 5.14001 5.14930 5.26295 5.39418 5.51535 5.60772 5.75755 6.19699 6.23018 6.28794 6.79658 6.81806 7.05318 7.80561 7.97809 9.16936 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.005190 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.026830 B = 5394.211653 C = 6471.367223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.227 3.773 3 N -0.529 5.529 4 C 0.337 3.663 5 N -0.560 5.560 6 C 0.390 3.610 7 O -0.484 6.484 8 C -0.263 4.263 9 C 0.598 3.402 10 O -0.564 6.564 11 N -0.590 5.590 12 C 0.087 3.913 13 C 0.175 3.825 14 H 0.082 0.918 15 N -0.738 5.738 16 C -0.224 4.224 17 H 0.063 0.937 18 C -0.056 4.056 19 N -0.980 5.980 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.301 1.301 23 H -0.262 1.262 24 C -0.076 4.076 25 C -0.124 4.124 26 C -0.127 4.127 27 C 0.115 3.885 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.245 0.755 32 H 0.427 0.573 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.365 0.635 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.511 7.951 15.181 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 N -0.245 5.245 4 C 0.051 3.949 5 N -0.285 5.285 6 C 0.203 3.797 7 O -0.295 6.295 8 C -0.272 4.272 9 C 0.385 3.615 10 O -0.445 6.445 11 N -0.320 5.320 12 C -0.039 4.039 13 C 0.065 3.935 14 H 0.100 0.900 15 N -0.380 5.380 16 C -0.355 4.355 17 H 0.081 0.919 18 C -0.248 4.248 19 N -0.631 5.631 20 Si 0.770 3.230 21 H -0.197 1.197 22 H -0.228 1.228 23 H -0.187 1.187 24 C -0.078 4.078 25 C -0.182 4.182 26 C -0.185 4.185 27 C -0.006 4.006 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.261 0.739 32 H 0.291 0.709 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.096 8.622 15.020 21.125 hybrid contribution 1.176 -1.973 0.470 2.345 sum -10.920 6.648 15.491 20.085 Atomic orbital electron populations 1.21009 0.84938 1.05373 1.05417 1.22238 0.99060 0.85407 0.85202 1.68419 1.10460 1.28765 1.16829 1.25815 0.86316 0.96845 0.85946 1.68133 1.43159 0.98922 1.18292 1.19602 0.85893 0.86340 0.87873 1.84668 1.72634 1.36249 1.35917 1.21681 0.94982 0.96870 1.13631 1.17237 0.78100 0.83643 0.82565 1.90774 1.56344 1.66177 1.31156 1.48361 1.56165 1.22086 1.05408 1.22942 0.99996 0.98939 0.82018 1.21448 0.88080 0.90026 0.93926 0.89971 1.42767 1.38893 1.19040 1.37319 1.18988 1.09199 1.01542 1.05753 0.91880 1.25351 0.98478 1.01952 0.99028 1.69860 1.24393 1.38359 1.30439 0.85618 0.76747 0.81465 0.79174 1.19667 1.22842 1.18681 1.22071 0.95676 0.97514 0.92500 1.21670 0.93867 0.99478 1.03154 1.21615 1.01330 0.93906 1.01668 1.22496 0.95665 0.84194 0.98293 0.87526 0.87032 0.90193 0.73920 0.70891 0.90331 0.94204 0.79996 0.93465 0.91133 0.90331 0.92330 0.94381 0.89983 0.91765 0.92925 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.85 71.24 0.70 -1.19 16 2 C 0.23 5.43 6.86 42.87 0.29 5.73 16 3 N -0.53 -11.97 10.36 -187.20 -1.94 -13.91 16 4 C 0.34 7.28 12.27 180.86 2.22 9.50 16 5 N -0.56 -15.48 10.45 -312.04 -3.26 -18.74 16 6 C 0.39 11.79 7.85 85.18 0.67 12.46 16 7 O -0.48 -14.76 13.10 -85.62 -1.12 -15.89 16 8 C -0.26 -7.54 4.85 -19.83 -0.10 -7.64 16 9 C 0.60 18.59 5.54 86.70 0.48 19.07 16 10 O -0.56 -19.80 17.36 -4.00 -0.07 -19.87 16 11 N -0.59 -17.84 3.31 -815.11 -2.70 -20.53 16 12 C 0.09 2.83 5.89 86.73 0.51 3.34 16 13 C 0.18 5.86 2.86 46.18 0.13 5.99 16 14 H 0.08 2.74 8.03 -2.38 -0.02 2.73 16 15 N -0.74 -32.02 4.41 -317.32 -1.40 -33.42 16 16 C -0.22 -12.16 10.46 84.03 0.88 -11.28 16 17 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 18 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 19 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 20 Si 0.94 45.35 27.74 68.60 1.90 47.25 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 23 H -0.26 -11.71 6.52 99.48 0.65 -11.07 16 24 C -0.08 -1.92 0.83 -50.71 -0.04 -1.96 16 25 C -0.12 -2.27 8.58 71.98 0.62 -1.65 16 26 C -0.13 -3.15 8.22 71.98 0.59 -2.56 16 27 C 0.12 3.19 5.82 86.93 0.51 3.70 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.42 7.18 -2.39 -0.02 1.40 16 31 H 0.25 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.43 8.71 9.06 -74.06 -0.67 8.04 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 35 H 0.37 15.72 3.96 -92.71 -0.37 15.36 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.03 7.91 -2.39 -0.02 1.02 16 40 H 0.04 1.10 6.38 -2.39 -0.02 1.09 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.64 7.99 -2.38 -0.02 1.62 16 44 H 0.09 2.30 7.95 -2.39 -0.02 2.28 16 Total: -1.00 -75.57 364.75 -0.41 -75.98 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.06 Total: 30.21 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 7.93 Total: 30.72 kcal Atomic # 7 Polarization: -139.41 SS G_CDS: -9.00 Total: -148.41 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.19 Total: -35.75 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -75.57 -0.41 -75.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996178520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.233 kcal (2) G-P(sol) polarization free energy of solvation -75.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds