Wall clock time and date at job start Tue Mar 31 2020 13:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32221 * 120.51254 * 2 1 4 4 C 1.31902 * 121.13975 * 180.33488 * 3 2 1 5 5 N 1.31752 * 122.19870 * 359.65931 * 4 3 2 6 6 C 1.32753 * 120.87189 * 0.02562 * 5 4 3 7 7 O 1.35275 * 120.61451 * 180.02562 * 6 5 4 8 8 C 1.39765 * 120.50515 * 179.72230 * 2 1 3 9 9 C 1.47535 * 120.98176 * 359.97181 * 8 2 1 10 10 O 1.21584 * 119.99924 * 269.72467 * 9 8 2 11 11 N 1.34772 * 120.00010 * 89.45182 * 9 8 2 12 12 C 1.46505 * 120.00143 * 180.27541 * 11 9 8 13 13 C 1.53000 * 109.47165 * 179.97438 * 12 11 9 14 14 C 1.53043 * 109.46146 * 295.02922 * 13 12 11 15 15 C 1.53190 * 109.31502 * 178.60249 * 14 13 12 16 16 N 1.46923 * 108.76358 * 54.65050 * 15 14 13 17 17 C 1.36944 * 120.62993 * 126.41203 * 16 15 14 18 18 H 1.07997 * 119.99462 * 332.60401 * 17 16 15 19 19 C 1.38805 * 120.00480 * 152.60891 * 17 16 15 20 20 N 1.31611 * 120.00424 * 159.34464 * 19 17 16 21 21 Si 1.86808 * 119.99712 * 339.34180 * 19 17 16 22 22 H 1.48500 * 109.46925 * 92.94496 * 21 19 17 23 23 H 1.48498 * 109.47093 * 212.94299 * 21 19 17 24 24 H 1.48499 * 109.47093 * 332.94576 * 21 19 17 25 25 C 1.46929 * 118.74408 * 306.38566 * 16 15 14 26 26 C 1.53040 * 109.46112 * 174.97498 * 13 12 11 27 27 H 1.08998 * 109.47562 * 270.28344 * 1 2 3 28 28 H 1.09002 * 109.47329 * 30.28134 * 1 2 3 29 29 H 1.08996 * 109.47459 * 150.28139 * 1 2 3 30 30 H 1.08002 * 118.90090 * 179.68156 * 4 3 2 31 31 H 0.96707 * 113.99624 * 269.97886 * 7 6 5 32 32 H 0.96998 * 119.99821 * 0.27433 * 11 9 8 33 33 H 1.08994 * 109.47252 * 300.00098 * 12 11 9 34 34 H 1.09009 * 109.47022 * 60.00141 * 12 11 9 35 35 H 1.08998 * 109.45996 * 54.99707 * 13 12 11 36 36 H 1.08999 * 109.49668 * 298.56770 * 14 13 12 37 37 H 1.08997 * 109.50068 * 58.66092 * 14 13 12 38 38 H 1.09001 * 109.59725 * 294.86737 * 15 14 13 39 39 H 1.08995 * 109.70366 * 174.50710 * 15 14 13 40 40 H 0.97002 * 120.00557 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58596 * 293.82590 * 25 16 15 42 42 H 1.08995 * 109.70350 * 173.46629 * 25 16 15 43 43 H 1.09003 * 109.49147 * 301.34066 * 26 13 12 44 44 H 1.09003 * 109.49704 * 61.39785 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 -0.0066 5 7 4.2115 0.0464 -0.0069 6 6 3.6233 -1.1437 -0.0009 7 8 4.3617 -2.2771 -0.0007 8 6 2.2165 -1.2042 0.0058 9 6 1.5122 -2.5006 0.0127 10 8 1.2269 -3.0318 1.0685 11 7 1.1802 -3.0933 -1.1512 12 6 0.4755 -4.3777 -1.1444 13 6 0.2199 -4.8269 -2.5844 14 6 -0.7361 -3.8434 -3.2633 15 6 -0.9621 -4.2768 -4.7151 16 7 -1.4239 -5.6715 -4.7255 17 6 -2.5766 -6.0199 -5.3777 18 1 -3.3668 -5.2944 -5.5025 19 6 -2.7295 -7.3055 -5.8782 20 7 -3.9329 -7.7746 -6.1310 21 14 -1.2269 -8.3700 -6.1931 22 1 -0.9510 -9.2035 -4.9954 23 1 -1.4804 -9.2508 -7.3615 24 1 -0.0551 -7.5018 -6.4726 25 6 -0.6253 -6.6855 -4.0235 26 6 -0.4029 -6.2248 -2.5795 27 1 -0.3634 0.0051 1.0276 28 1 -0.3634 0.8875 -0.5182 29 1 -0.3634 -0.8924 -0.5094 30 1 4.0088 2.1047 -0.0116 31 1 4.5724 -2.6094 -0.8841 32 1 1.4078 -2.6695 -1.9935 33 1 1.0844 -5.1235 -0.6334 34 1 -0.4761 -4.2672 -0.6243 35 1 1.1632 -4.8515 -3.1300 36 1 -1.6883 -3.8368 -2.7329 37 1 -0.3024 -2.8435 -3.2456 38 1 -0.0274 -4.1973 -5.2702 39 1 -1.7161 -3.6387 -5.1760 40 1 -4.0397 -8.6732 -6.4804 41 1 0.3369 -6.8023 -4.5221 42 1 -1.1561 -7.6375 -4.0257 43 1 0.2680 -6.9202 -2.0751 44 1 -1.3581 -6.1957 -2.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001752087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:04 Heat of formation + Delta-G solvation = -7.559700 kcal Electronic energy + Delta-G solvation = -27037.720013 eV Core-core repulsion = 23184.194747 eV Total energy + Delta-G solvation = -3853.525266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85475 -39.74606 -38.28025 -38.13891 -35.26748 -34.68759 -33.08876 -32.32251 -31.12058 -30.43652 -29.21507 -27.32290 -25.46766 -23.84494 -23.32112 -22.87049 -21.41829 -21.08044 -19.54790 -19.40180 -18.56248 -18.06267 -16.91195 -16.81041 -16.25196 -15.55664 -15.31448 -15.13763 -14.69943 -14.43171 -14.25250 -14.01221 -13.82656 -13.51601 -13.34483 -13.30981 -13.10334 -12.94380 -12.53807 -12.45001 -12.10817 -11.87488 -11.74328 -11.49626 -10.90689 -10.84821 -10.73704 -10.59279 -10.34803 -10.19501 -9.98133 -9.94857 -9.83801 -9.73577 -9.48829 -9.29568 -8.67178 -7.03515 -5.99358 -3.35586 0.09721 0.39225 2.14824 2.70277 2.85356 3.08157 3.27541 3.44199 3.46335 3.47068 3.73478 4.24660 4.43808 4.48226 4.64462 4.78608 4.84179 4.88646 4.99534 5.09714 5.12232 5.18911 5.36515 5.43667 5.57560 5.66044 5.72598 5.77336 5.80596 5.96863 6.07817 6.09934 6.26506 6.30520 6.30793 6.39296 6.54784 6.58377 6.62528 6.79161 6.88206 7.14728 7.47791 7.83507 7.91473 8.28316 8.89369 9.67438 10.04687 11.16637 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.002758 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.751884 B =10149.088262 C =10473.927762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.230 3.770 3 N -0.525 5.525 4 C 0.336 3.664 5 N -0.542 5.542 6 C 0.399 3.601 7 O -0.467 6.467 8 C -0.252 4.252 9 C 0.575 3.425 10 O -0.519 6.519 11 N -0.716 5.716 12 C 0.122 3.878 13 C -0.091 4.091 14 C -0.130 4.130 15 C 0.148 3.852 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.126 3.874 26 C -0.126 4.126 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.412 0.588 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.063 0.937 40 H 0.263 0.737 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.421 15.808 10.362 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 N -0.241 5.241 4 C 0.049 3.951 5 N -0.267 5.267 6 C 0.211 3.789 7 O -0.275 6.275 8 C -0.261 4.261 9 C 0.358 3.642 10 O -0.394 6.394 11 N -0.367 5.367 12 C -0.001 4.001 13 C -0.110 4.110 14 C -0.169 4.169 15 C 0.022 3.978 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.001 3.999 26 C -0.166 4.166 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.224 0.776 31 H 0.273 0.727 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.530 16.090 11.629 24.601 hybrid contribution 0.781 -1.398 -1.035 1.907 sum 15.311 14.692 10.594 23.717 Atomic orbital electron populations 1.20956 0.86691 1.04917 1.04782 1.21864 0.97866 0.85908 0.85961 1.68328 1.10186 1.29321 1.16243 1.25021 0.86254 0.96148 0.87655 1.68078 1.42599 0.98666 1.17370 1.19383 0.85487 0.85999 0.88034 1.84699 1.72557 1.35873 1.34370 1.21767 0.95120 0.96921 1.12297 1.17532 0.78788 0.83386 0.84482 1.90850 1.53379 1.64296 1.30892 1.46099 1.59097 1.23645 1.07879 1.21653 0.96870 0.83324 0.98213 1.21317 0.99441 0.97006 0.93255 1.22089 0.99181 0.96450 0.99155 1.20902 0.97476 0.86622 0.92760 1.44350 1.26559 1.02617 1.59422 1.18916 0.91647 0.98171 1.30223 0.89731 1.25282 0.96195 0.97349 0.98747 1.69831 1.20752 1.17006 1.47477 0.86948 0.84665 0.80170 0.76837 1.21592 1.23172 1.19656 1.21320 0.94776 0.93790 0.90045 1.21998 1.00575 0.94253 0.99757 0.88568 0.88720 0.89661 0.77626 0.72676 0.76449 0.91254 0.90945 0.91136 0.91506 0.93127 0.96200 0.91858 0.92726 0.95815 0.90812 0.92490 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.85 36.01 0.35 -0.53 16 2 C 0.23 2.18 6.86 -81.85 -0.56 1.62 16 3 N -0.52 -4.82 10.36 -10.52 -0.11 -4.93 16 4 C 0.34 2.71 12.27 -92.10 -1.13 1.58 16 5 N -0.54 -5.32 10.45 -14.32 -0.15 -5.47 16 6 C 0.40 4.07 7.85 -16.18 -0.13 3.95 16 7 O -0.47 -4.30 13.10 -17.52 -0.23 -4.53 16 8 C -0.25 -2.61 5.67 -104.56 -0.59 -3.21 16 9 C 0.58 6.75 5.51 -12.47 -0.07 6.68 16 10 O -0.52 -8.26 17.11 5.29 0.09 -8.17 16 11 N -0.72 -6.93 5.27 -61.35 -0.32 -7.25 16 12 C 0.12 1.40 5.06 -4.04 -0.02 1.37 16 13 C -0.09 -1.16 2.19 -90.58 -0.20 -1.36 16 14 C -0.13 -1.77 5.25 -26.61 -0.14 -1.91 16 15 C 0.15 2.63 6.52 -3.71 -0.02 2.61 16 16 N -0.61 -13.55 2.77 -172.33 -0.48 -14.03 16 17 C -0.26 -7.07 10.03 -15.06 -0.15 -7.22 16 18 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 19 C 0.02 0.66 5.23 -17.44 -0.09 0.57 16 20 N -0.91 -27.37 13.97 55.49 0.78 -26.60 16 21 Si 0.88 21.81 24.35 -169.99 -4.14 17.67 16 22 H -0.29 -6.85 6.62 56.52 0.37 -6.48 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.27 -6.55 6.63 56.52 0.37 -6.17 16 25 C 0.13 2.57 4.20 -3.71 -0.02 2.56 16 26 C -0.13 -1.99 5.36 -26.61 -0.14 -2.13 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 30 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.41 1.67 9.06 45.56 0.41 2.08 16 32 H 0.40 3.04 7.64 -40.82 -0.31 2.73 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.54 7.15 -51.93 -0.37 0.17 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.02 0.48 7.08 -51.93 -0.37 0.11 16 42 H 0.07 1.69 4.50 -51.93 -0.23 1.45 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -35.12 357.81 -7.57 -42.69 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.50 Total: 0.65 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.91 Total: 4.57 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.28 Total: -58.28 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.14 Total: -12.70 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.12 -7.57 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001752087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.130 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds