Wall clock time and date at job start Tue Mar 31 2020 13:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32221 * 120.51254 * 2 1 4 4 C 1.31902 * 121.13975 * 180.33488 * 3 2 1 5 5 N 1.31752 * 122.19870 * 359.65931 * 4 3 2 6 6 C 1.32753 * 120.87189 * 0.02562 * 5 4 3 7 7 O 1.35275 * 120.61451 * 180.02562 * 6 5 4 8 8 C 1.39765 * 120.50515 * 179.72230 * 2 1 3 9 9 C 1.47535 * 120.98176 * 359.97181 * 8 2 1 10 10 O 1.21584 * 119.99924 * 269.72467 * 9 8 2 11 11 N 1.34772 * 120.00010 * 89.45182 * 9 8 2 12 12 C 1.46505 * 120.00143 * 180.27541 * 11 9 8 13 13 C 1.53000 * 109.47165 * 179.97438 * 12 11 9 14 14 C 1.53043 * 109.46146 * 295.02922 * 13 12 11 15 15 C 1.53190 * 109.31502 * 178.60249 * 14 13 12 16 16 N 1.46923 * 108.76358 * 54.65050 * 15 14 13 17 17 C 1.36944 * 120.62993 * 126.41203 * 16 15 14 18 18 H 1.07997 * 119.99462 * 332.60401 * 17 16 15 19 19 C 1.38805 * 120.00480 * 152.60891 * 17 16 15 20 20 N 1.31611 * 120.00424 * 159.34464 * 19 17 16 21 21 Si 1.86808 * 119.99712 * 339.34180 * 19 17 16 22 22 H 1.48500 * 109.46925 * 92.94496 * 21 19 17 23 23 H 1.48498 * 109.47093 * 212.94299 * 21 19 17 24 24 H 1.48499 * 109.47093 * 332.94576 * 21 19 17 25 25 C 1.46929 * 118.74408 * 306.38566 * 16 15 14 26 26 C 1.53040 * 109.46112 * 174.97498 * 13 12 11 27 27 H 1.08998 * 109.47562 * 270.28344 * 1 2 3 28 28 H 1.09002 * 109.47329 * 30.28134 * 1 2 3 29 29 H 1.08996 * 109.47459 * 150.28139 * 1 2 3 30 30 H 1.08002 * 118.90090 * 179.68156 * 4 3 2 31 31 H 0.96707 * 113.99624 * 269.97886 * 7 6 5 32 32 H 0.96998 * 119.99821 * 0.27433 * 11 9 8 33 33 H 1.08994 * 109.47252 * 300.00098 * 12 11 9 34 34 H 1.09009 * 109.47022 * 60.00141 * 12 11 9 35 35 H 1.08998 * 109.45996 * 54.99707 * 13 12 11 36 36 H 1.08999 * 109.49668 * 298.56770 * 14 13 12 37 37 H 1.08997 * 109.50068 * 58.66092 * 14 13 12 38 38 H 1.09001 * 109.59725 * 294.86737 * 15 14 13 39 39 H 1.08995 * 109.70366 * 174.50710 * 15 14 13 40 40 H 0.97002 * 120.00557 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58596 * 293.82590 * 25 16 15 42 42 H 1.08995 * 109.70350 * 173.46629 * 25 16 15 43 43 H 1.09003 * 109.49147 * 301.34066 * 26 13 12 44 44 H 1.09003 * 109.49704 * 61.39785 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 -0.0066 5 7 4.2115 0.0464 -0.0069 6 6 3.6233 -1.1437 -0.0009 7 8 4.3617 -2.2771 -0.0007 8 6 2.2165 -1.2042 0.0058 9 6 1.5122 -2.5006 0.0127 10 8 1.2269 -3.0318 1.0685 11 7 1.1802 -3.0933 -1.1512 12 6 0.4755 -4.3777 -1.1444 13 6 0.2199 -4.8269 -2.5844 14 6 -0.7361 -3.8434 -3.2633 15 6 -0.9621 -4.2768 -4.7151 16 7 -1.4239 -5.6715 -4.7255 17 6 -2.5766 -6.0199 -5.3777 18 1 -3.3668 -5.2944 -5.5025 19 6 -2.7295 -7.3055 -5.8782 20 7 -3.9329 -7.7746 -6.1310 21 14 -1.2269 -8.3700 -6.1931 22 1 -0.9510 -9.2035 -4.9954 23 1 -1.4804 -9.2508 -7.3615 24 1 -0.0551 -7.5018 -6.4726 25 6 -0.6253 -6.6855 -4.0235 26 6 -0.4029 -6.2248 -2.5795 27 1 -0.3634 0.0051 1.0276 28 1 -0.3634 0.8875 -0.5182 29 1 -0.3634 -0.8924 -0.5094 30 1 4.0088 2.1047 -0.0116 31 1 4.5724 -2.6094 -0.8841 32 1 1.4078 -2.6695 -1.9935 33 1 1.0844 -5.1235 -0.6334 34 1 -0.4761 -4.2672 -0.6243 35 1 1.1632 -4.8515 -3.1300 36 1 -1.6883 -3.8368 -2.7329 37 1 -0.3024 -2.8435 -3.2456 38 1 -0.0274 -4.1973 -5.2702 39 1 -1.7161 -3.6387 -5.1760 40 1 -4.0397 -8.6732 -6.4804 41 1 0.3369 -6.8023 -4.5221 42 1 -1.1561 -7.6375 -4.0257 43 1 0.2680 -6.9202 -2.0751 44 1 -1.3581 -6.1957 -2.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001752087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:04 Heat of formation + Delta-G solvation = -36.701445 kcal Electronic energy + Delta-G solvation = -27038.983694 eV Core-core repulsion = 23184.194747 eV Total energy + Delta-G solvation = -3854.788947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55147 -40.68691 -39.50203 -38.90029 -36.53889 -35.37573 -34.55239 -33.30334 -32.62889 -31.85433 -29.90828 -28.59028 -26.43923 -25.31083 -24.25075 -23.96524 -22.84500 -21.98642 -20.87959 -20.05383 -19.26434 -19.03840 -18.60668 -17.62110 -17.25285 -16.99088 -16.32108 -16.04672 -15.84069 -15.46796 -15.34931 -15.27390 -15.07432 -14.72563 -14.44498 -14.42977 -13.96240 -13.91332 -13.73597 -13.62191 -13.40932 -13.14037 -12.94895 -12.54259 -12.48766 -12.23616 -12.11171 -11.74217 -11.57828 -11.50797 -11.35855 -11.19608 -11.08555 -10.70278 -10.65526 -10.54273 -10.20511 -8.90423 -8.15428 -5.46438 -0.56862 -0.28217 1.27139 1.30934 1.41973 1.50991 1.93253 2.16369 2.41680 2.42768 2.88172 3.07719 3.10924 3.38903 3.49636 3.76281 3.78487 3.88512 3.96495 4.07048 4.20550 4.40540 4.44542 4.52009 4.56097 4.61948 4.64904 4.73335 4.78568 4.89386 4.90445 5.02862 5.09119 5.15545 5.18360 5.22794 5.27644 5.30763 5.61007 5.64814 5.89168 6.14328 6.30832 6.35196 6.83497 6.95271 6.99862 7.65945 8.05285 9.04729 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.002758 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.751884 B =10149.088262 C =10473.927762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.229 3.771 3 N -0.534 5.534 4 C 0.340 3.660 5 N -0.557 5.557 6 C 0.398 3.602 7 O -0.479 6.479 8 C -0.267 4.267 9 C 0.584 3.416 10 O -0.565 6.565 11 N -0.699 5.699 12 C 0.133 3.867 13 C -0.079 4.079 14 C -0.119 4.119 15 C 0.141 3.859 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.050 0.950 19 C -0.039 4.039 20 N -0.960 5.960 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.315 1.315 24 H -0.257 1.257 25 C 0.119 3.881 26 C -0.121 4.121 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.243 0.757 31 H 0.432 0.568 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.260 0.740 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.404 17.336 10.976 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 N -0.250 5.250 4 C 0.054 3.946 5 N -0.283 5.283 6 C 0.210 3.790 7 O -0.291 6.291 8 C -0.276 4.276 9 C 0.368 3.632 10 O -0.444 6.444 11 N -0.350 5.350 12 C 0.010 3.990 13 C -0.098 4.098 14 C -0.158 4.158 15 C 0.016 3.984 16 N -0.347 5.347 17 C -0.376 4.376 18 H 0.067 0.933 19 C -0.234 4.234 20 N -0.607 5.607 21 Si 0.778 3.222 22 H -0.202 1.202 23 H -0.244 1.244 24 H -0.181 1.181 25 C -0.006 4.006 26 C -0.160 4.160 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.102 0.898 30 H 0.258 0.742 31 H 0.296 0.704 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.573 17.657 12.222 27.748 hybrid contribution -0.156 -1.745 -1.215 2.132 sum 17.417 15.912 11.007 26.033 Atomic orbital electron populations 1.21007 0.85747 1.05547 1.04989 1.22127 0.98604 0.85793 0.85182 1.68426 1.10728 1.29012 1.16867 1.25786 0.86089 0.97002 0.85715 1.68181 1.42880 0.98909 1.18288 1.19504 0.85517 0.86420 0.87518 1.84652 1.72421 1.35726 1.36302 1.21639 0.95237 0.96393 1.14313 1.17640 0.78016 0.83484 0.84014 1.90831 1.55375 1.65619 1.32560 1.45890 1.58098 1.22886 1.08145 1.21398 0.96639 0.84039 0.96925 1.21183 0.99660 0.94757 0.94197 1.21965 0.99135 0.98699 0.95962 1.21135 0.97674 0.83858 0.95692 1.44513 1.25685 1.04978 1.59504 1.18876 0.92481 0.97194 1.29095 0.93270 1.25938 0.98661 0.99139 0.99635 1.69975 1.23038 1.17579 1.50102 0.85876 0.81382 0.78515 0.76416 1.20185 1.24449 1.18122 1.21387 0.94206 0.92249 0.92714 1.21884 1.00858 0.96813 0.96473 0.88540 0.87286 0.89775 0.74161 0.70353 0.74787 0.91074 0.92016 0.89026 0.93168 0.89203 0.94275 0.93048 0.93075 0.94545 0.93721 0.89929 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.85 71.24 0.70 -0.85 16 2 C 0.23 3.87 6.86 42.87 0.29 4.16 16 3 N -0.53 -8.52 10.36 -187.21 -1.94 -10.46 16 4 C 0.34 4.57 12.27 180.86 2.22 6.79 16 5 N -0.56 -9.65 10.45 -312.04 -3.26 -12.91 16 6 C 0.40 7.31 7.85 85.18 0.67 7.98 16 7 O -0.48 -7.84 13.10 -85.60 -1.12 -8.96 16 8 C -0.27 -5.00 5.67 -19.83 -0.11 -5.12 16 9 C 0.58 12.56 5.51 86.70 0.48 13.03 16 10 O -0.57 -17.38 17.11 -3.98 -0.07 -17.44 16 11 N -0.70 -11.37 5.27 -466.27 -2.46 -13.82 16 12 C 0.13 2.65 5.06 86.38 0.44 3.09 16 13 C -0.08 -1.74 2.19 -10.77 -0.02 -1.76 16 14 C -0.12 -2.89 5.25 30.67 0.16 -2.73 16 15 C 0.14 4.71 6.52 86.36 0.56 5.27 16 16 N -0.62 -27.34 2.77 -699.12 -1.94 -29.27 16 17 C -0.25 -13.65 10.03 84.03 0.84 -12.81 16 18 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 19 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 20 N -0.96 -60.17 13.97 21.65 0.30 -59.87 16 21 Si 0.95 45.57 24.35 68.60 1.67 47.24 16 22 H -0.28 -12.47 6.62 99.48 0.66 -11.81 16 23 H -0.32 -15.60 7.11 99.48 0.71 -14.89 16 24 H -0.26 -11.56 6.63 99.48 0.66 -10.90 16 25 C 0.12 4.63 4.20 86.36 0.36 4.99 16 26 C -0.12 -3.51 5.36 30.67 0.16 -3.35 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.13 7.18 -2.39 -0.02 1.11 16 30 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.43 2.41 9.06 -74.05 -0.67 1.74 16 32 H 0.41 4.59 7.64 -92.71 -0.71 3.88 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.52 7.15 -2.39 -0.02 1.50 16 38 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.04 1.34 7.08 -2.39 -0.02 1.32 16 42 H 0.04 1.99 4.50 -2.39 -0.01 1.98 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.78 357.81 -2.03 -80.81 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -0.43 Total: 7.80 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 7.20 Total: 16.89 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -9.29 Total: -126.34 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.19 Total: -26.41 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Total: -78.78 -2.03 -80.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001752087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.113 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds