Wall clock time and date at job start Tue Mar 31 2020 12:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46483 * 240.00078 * 3 2 1 5 5 H 1.48501 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47232 * 119.99965 * 3 2 1 7 7 C 1.38805 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99898 * 163.07212 * 7 2 1 9 9 N 1.36942 * 120.00378 * 343.07534 * 7 2 1 10 10 C 1.46923 * 120.62360 * 331.83486 * 9 7 2 11 11 C 1.53199 * 108.77504 * 233.62829 * 10 9 7 12 12 C 1.53037 * 109.30869 * 305.36851 * 11 10 9 13 13 C 1.53008 * 109.45626 * 181.38168 * 12 11 10 14 14 N 1.46503 * 109.46845 * 174.97064 * 13 12 11 15 15 C 1.34774 * 119.99738 * 180.02562 * 14 13 12 16 16 O 1.21675 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.46813 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.36358 * 125.84679 * 179.71830 * 17 15 14 19 19 C 1.41304 * 107.00601 * 179.85075 * 18 17 15 20 20 C 1.47400 * 126.46225 * 180.13666 * 19 18 17 21 21 N 1.34776 * 120.00143 * 180.29646 * 20 19 18 22 22 O 1.21611 * 119.99514 * 0.30176 * 20 19 18 23 23 C 1.38208 * 107.07655 * 0.40637 * 19 18 17 24 24 N 1.34261 * 108.39749 * 359.74944 * 23 19 18 25 25 H 0.96997 * 125.39502 * 180.02562 * 24 23 19 26 26 C 1.53042 * 109.52750 * 61.37293 * 12 11 10 27 27 C 1.46917 * 120.63341 * 151.85668 * 9 7 2 28 28 H 0.96998 * 120.00588 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58828 * 113.84679 * 10 9 7 30 30 H 1.08999 * 109.71250 * 353.48659 * 10 9 7 31 31 H 1.08990 * 109.49649 * 185.41708 * 11 10 9 32 32 H 1.09002 * 109.49644 * 65.31793 * 11 10 9 33 33 H 1.08999 * 109.46682 * 301.35556 * 12 11 10 34 34 H 1.08991 * 109.47127 * 294.97331 * 13 12 11 35 35 H 1.08999 * 109.46537 * 54.97699 * 13 12 11 36 36 H 0.97004 * 120.00292 * 0.02562 * 14 13 12 37 37 H 1.07998 * 126.49483 * 0.02562 * 18 17 15 38 38 H 0.97000 * 120.00151 * 359.97438 * 21 20 19 39 39 H 0.96995 * 120.00166 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.80207 * 179.78534 * 23 19 18 41 41 H 1.08999 * 109.49804 * 58.57778 * 26 12 11 42 42 H 1.09005 * 109.49685 * 178.67457 * 26 12 11 43 43 H 1.08997 * 109.58818 * 246.16011 * 27 9 7 44 44 H 1.09005 * 109.58899 * 6.43776 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3623 0.3463 10 6 0.2263 -2.3399 1.2681 11 6 0.4983 -3.3182 2.4152 12 6 0.8134 -4.7000 1.8378 13 6 1.0518 -5.6880 2.9816 14 7 1.2346 -7.0344 2.4336 15 6 1.4596 -8.0739 3.2613 16 8 1.5104 -7.8943 4.4637 17 6 1.6434 -9.4230 2.7122 18 6 1.8819 -10.5540 3.4357 19 6 1.9886 -11.6195 2.5138 20 6 2.2414 -13.0353 2.8367 21 7 2.3247 -13.9476 1.8481 22 8 2.3748 -13.3802 3.9953 23 6 1.8174 -11.0829 1.2517 24 7 1.6103 -9.7623 1.3773 25 1 1.4606 -9.1449 0.6443 26 6 2.0688 -4.6162 0.9665 27 6 1.8144 -3.6529 -0.1971 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6767 -2.6412 0.7374 30 1 0.0965 -1.3344 1.6685 31 1 -0.3821 -3.3831 3.0544 32 1 1.3480 -2.9659 3.0001 33 1 -0.0266 -5.0409 1.2326 34 1 1.9451 -5.3960 3.5336 35 1 0.1922 -5.6822 3.6517 36 1 1.1938 -7.1776 1.4751 37 1 1.9695 -10.6228 4.5099 38 1 2.2178 -13.6725 0.9241 39 1 2.4914 -14.8792 2.0606 40 1 1.8449 -11.6325 0.3224 41 1 2.9035 -4.2516 1.5652 42 1 2.3062 -5.6052 0.5745 43 1 1.0409 -4.0613 -0.8475 44 1 2.7337 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001974451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:12 Heat of formation + Delta-G solvation = -21.202159 kcal Electronic energy + Delta-G solvation = -26045.157700 eV Core-core repulsion = 22191.040852 eV Total energy + Delta-G solvation = -3854.116848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94663 -39.60865 -38.95870 -37.83352 -35.11781 -34.01139 -33.02306 -31.65200 -30.96485 -30.03536 -29.59922 -26.95227 -24.40208 -23.68927 -22.91385 -22.15325 -21.13346 -20.56997 -19.95843 -19.52419 -18.97580 -17.32636 -16.83419 -16.63740 -16.10613 -15.78468 -15.73604 -15.03215 -14.85788 -14.30027 -14.26829 -14.01950 -13.85197 -13.61502 -13.55283 -13.46614 -13.20325 -12.75489 -12.42907 -12.41383 -11.95887 -11.42343 -11.04394 -10.76339 -10.59915 -10.45002 -10.37296 -10.29784 -10.25811 -10.02264 -9.96778 -9.64064 -9.53039 -9.52759 -9.22413 -8.74688 -8.51670 -6.73132 -5.84164 -3.27057 1.05933 1.49181 2.51001 2.92679 3.03629 3.30479 3.33065 3.34945 3.41154 3.42459 4.34320 4.45146 4.47982 4.58894 4.83251 5.01266 5.12574 5.26876 5.35202 5.41461 5.52186 5.59562 5.76171 5.83538 5.92415 6.02218 6.05239 6.22452 6.23927 6.31719 6.35260 6.45796 6.51932 6.60519 6.67083 6.72318 6.74421 6.88236 7.03735 7.28404 7.33538 7.59847 7.74265 7.99537 8.01937 8.39999 9.16124 9.79401 10.35673 11.24338 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035658 B = 0.002070 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.048404 B =13525.966137 C =13903.120579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.123 3.877 14 N -0.724 5.724 15 C 0.584 3.416 16 O -0.525 6.525 17 C -0.054 4.054 18 C -0.046 4.046 19 C -0.239 4.239 20 C 0.594 3.406 21 N -0.856 5.856 22 O -0.544 6.544 23 C 0.072 3.928 24 N -0.522 5.522 25 H 0.423 0.577 26 C -0.127 4.127 27 C 0.146 3.854 28 H 0.255 0.745 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.393 0.607 37 H 0.159 0.841 38 H 0.398 0.602 39 H 0.403 0.597 40 H 0.181 0.819 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.015 0.985 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -23.591 -1.910 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.109 4.109 13 C 0.001 3.999 14 N -0.375 5.375 15 C 0.370 3.630 16 O -0.401 6.401 17 C -0.166 4.166 18 C -0.071 4.071 19 C -0.250 4.250 20 C 0.381 3.619 21 N -0.419 5.419 22 O -0.422 6.422 23 C -0.070 4.070 24 N -0.117 5.117 25 H 0.261 0.739 26 C -0.166 4.166 27 C 0.019 3.981 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.177 0.823 38 H 0.226 0.774 39 H 0.234 0.766 40 H 0.198 0.802 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.033 0.967 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.684 -23.126 -0.300 23.189 hybrid contribution 0.316 0.783 -1.426 1.657 sum 2.000 -22.343 -1.726 22.499 Atomic orbital electron populations 1.70010 1.05268 1.25699 1.53748 1.25048 0.95299 0.98453 1.00792 0.86369 0.78932 0.83300 0.78160 1.20893 1.21607 1.20975 1.19130 0.92508 0.84850 1.41919 0.91802 1.44031 1.35912 1.01469 1.50038 1.20766 0.88571 0.98231 0.87862 1.22184 1.00502 0.94473 1.00150 1.21324 0.98683 0.95540 0.95355 1.21659 1.01952 0.79499 0.96840 1.45983 1.73247 1.08523 1.09721 1.17040 0.77109 0.82390 0.86411 1.90870 1.51027 1.84177 1.14059 1.20240 1.17967 0.95595 0.82757 1.21107 0.97184 0.88733 1.00090 1.19590 1.18348 0.93931 0.93082 1.17396 0.75132 0.84554 0.84823 1.43677 1.76995 1.11614 1.09652 1.90840 1.50437 1.81116 1.19759 1.22400 1.01888 0.83691 0.99034 1.41785 1.53396 1.08623 1.07894 0.73880 1.22085 0.97117 0.98488 0.98935 1.20877 0.97498 0.87116 0.92611 0.93531 0.96456 0.89340 0.92939 0.92271 0.91354 0.91196 0.91375 0.77305 0.82316 0.77418 0.76581 0.80179 0.92007 0.93844 0.96721 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 8 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -14.12 2.99 -172.32 -0.52 -14.64 16 10 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 11 C -0.13 -2.35 5.36 -26.61 -0.14 -2.49 16 12 C -0.09 -1.31 2.19 -90.57 -0.20 -1.50 16 13 C 0.12 1.62 5.06 -4.04 -0.02 1.60 16 14 N -0.72 -7.92 5.27 -61.57 -0.32 -8.24 16 15 C 0.58 7.47 7.79 -12.79 -0.10 7.37 16 16 O -0.53 -8.88 16.86 5.21 0.09 -8.79 16 17 C -0.05 -0.56 6.99 -82.40 -0.58 -1.13 16 18 C -0.05 -0.52 10.37 -39.09 -0.41 -0.92 16 19 C -0.24 -2.12 6.13 -105.01 -0.64 -2.77 16 20 C 0.59 5.72 8.09 -12.53 -0.10 5.62 16 21 N -0.86 -3.91 8.86 30.43 0.27 -3.64 16 22 O -0.54 -7.85 17.76 5.27 0.09 -7.76 16 23 C 0.07 0.36 11.43 -16.50 -0.19 0.17 16 24 N -0.52 -3.04 5.91 -9.30 -0.05 -3.10 16 25 H 0.42 1.22 8.14 -40.82 -0.33 0.89 16 26 C -0.13 -1.91 5.25 -26.61 -0.14 -2.05 16 27 C 0.15 2.79 6.52 -3.72 -0.02 2.77 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.39 3.17 6.73 -40.82 -0.27 2.90 16 37 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.40 0.42 7.74 -40.82 -0.32 0.11 16 39 H 0.40 1.47 8.93 -40.82 -0.36 1.11 16 40 H 0.18 0.03 7.44 -52.48 -0.39 -0.36 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.51 7.15 -51.93 -0.37 0.14 16 43 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -36.40 364.23 -8.28 -44.69 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.13 Total: 1.11 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.79 Total: 3.58 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.00 Total: -54.59 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.18 Total: -16.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.40 -8.28 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001974451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.484 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds