Wall clock time and date at job start Tue Mar 31 2020 12:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46483 * 240.00078 * 3 2 1 5 5 H 1.48501 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47232 * 119.99965 * 3 2 1 7 7 C 1.38805 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99898 * 163.07212 * 7 2 1 9 9 N 1.36942 * 120.00378 * 343.07534 * 7 2 1 10 10 C 1.46923 * 120.62360 * 331.83486 * 9 7 2 11 11 C 1.53199 * 108.77504 * 233.62829 * 10 9 7 12 12 C 1.53037 * 109.30869 * 305.36851 * 11 10 9 13 13 C 1.53008 * 109.45626 * 181.38168 * 12 11 10 14 14 N 1.46503 * 109.46845 * 174.97064 * 13 12 11 15 15 C 1.34774 * 119.99738 * 180.02562 * 14 13 12 16 16 O 1.21675 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.46813 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.36358 * 125.84679 * 179.71830 * 17 15 14 19 19 C 1.41304 * 107.00601 * 179.85075 * 18 17 15 20 20 C 1.47400 * 126.46225 * 180.13666 * 19 18 17 21 21 N 1.34776 * 120.00143 * 180.29646 * 20 19 18 22 22 O 1.21611 * 119.99514 * 0.30176 * 20 19 18 23 23 C 1.38208 * 107.07655 * 0.40637 * 19 18 17 24 24 N 1.34261 * 108.39749 * 359.74944 * 23 19 18 25 25 H 0.96997 * 125.39502 * 180.02562 * 24 23 19 26 26 C 1.53042 * 109.52750 * 61.37293 * 12 11 10 27 27 C 1.46917 * 120.63341 * 151.85668 * 9 7 2 28 28 H 0.96998 * 120.00588 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58828 * 113.84679 * 10 9 7 30 30 H 1.08999 * 109.71250 * 353.48659 * 10 9 7 31 31 H 1.08990 * 109.49649 * 185.41708 * 11 10 9 32 32 H 1.09002 * 109.49644 * 65.31793 * 11 10 9 33 33 H 1.08999 * 109.46682 * 301.35556 * 12 11 10 34 34 H 1.08991 * 109.47127 * 294.97331 * 13 12 11 35 35 H 1.08999 * 109.46537 * 54.97699 * 13 12 11 36 36 H 0.97004 * 120.00292 * 0.02562 * 14 13 12 37 37 H 1.07998 * 126.49483 * 0.02562 * 18 17 15 38 38 H 0.97000 * 120.00151 * 359.97438 * 21 20 19 39 39 H 0.96995 * 120.00166 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.80207 * 179.78534 * 23 19 18 41 41 H 1.08999 * 109.49804 * 58.57778 * 26 12 11 42 42 H 1.09005 * 109.49685 * 178.67457 * 26 12 11 43 43 H 1.08997 * 109.58818 * 246.16011 * 27 9 7 44 44 H 1.09005 * 109.58899 * 6.43776 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3623 0.3463 10 6 0.2263 -2.3399 1.2681 11 6 0.4983 -3.3182 2.4152 12 6 0.8134 -4.7000 1.8378 13 6 1.0518 -5.6880 2.9816 14 7 1.2346 -7.0344 2.4336 15 6 1.4596 -8.0739 3.2613 16 8 1.5104 -7.8943 4.4637 17 6 1.6434 -9.4230 2.7122 18 6 1.8819 -10.5540 3.4357 19 6 1.9886 -11.6195 2.5138 20 6 2.2414 -13.0353 2.8367 21 7 2.3247 -13.9476 1.8481 22 8 2.3748 -13.3802 3.9953 23 6 1.8174 -11.0829 1.2517 24 7 1.6103 -9.7623 1.3773 25 1 1.4606 -9.1449 0.6443 26 6 2.0688 -4.6162 0.9665 27 6 1.8144 -3.6529 -0.1971 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6767 -2.6412 0.7374 30 1 0.0965 -1.3344 1.6685 31 1 -0.3821 -3.3831 3.0544 32 1 1.3480 -2.9659 3.0001 33 1 -0.0266 -5.0409 1.2326 34 1 1.9451 -5.3960 3.5336 35 1 0.1922 -5.6822 3.6517 36 1 1.1938 -7.1776 1.4751 37 1 1.9695 -10.6228 4.5099 38 1 2.2178 -13.6725 0.9241 39 1 2.4914 -14.8792 2.0606 40 1 1.8449 -11.6325 0.3224 41 1 2.9035 -4.2516 1.5652 42 1 2.3062 -5.6052 0.5745 43 1 1.0409 -4.0613 -0.8475 44 1 2.7337 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001974451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:11 Heat of formation + Delta-G solvation = -51.147175 kcal Electronic energy + Delta-G solvation = -26046.456213 eV Core-core repulsion = 22191.040852 eV Total energy + Delta-G solvation = -3855.415361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60777 -40.59331 -39.76640 -39.22916 -36.48701 -34.67999 -34.53068 -32.68473 -32.22041 -31.45635 -30.58496 -28.37614 -25.96725 -24.40141 -24.05389 -23.52616 -22.51384 -21.33922 -20.87233 -20.52622 -20.00098 -18.66333 -17.88113 -17.31945 -17.03210 -16.89486 -16.67272 -16.47070 -15.87927 -15.66932 -15.30728 -15.20890 -15.04373 -14.82809 -14.66985 -14.46965 -14.39144 -14.00415 -13.84956 -13.42869 -13.36692 -13.00596 -12.81761 -12.55915 -12.28582 -12.03721 -11.84376 -11.65117 -11.45315 -11.21767 -11.13240 -11.08016 -10.61781 -10.52590 -10.28317 -10.15446 -9.39465 -8.66137 -7.87319 -5.31906 0.38448 0.78235 1.45979 1.48844 1.54934 1.92465 2.07608 2.17499 2.51191 2.58106 2.79685 3.27281 3.71211 3.75460 3.84212 3.90433 3.93973 4.06556 4.09287 4.29123 4.50229 4.54006 4.68499 4.72126 4.77405 4.84641 4.90234 4.93238 5.01851 5.11548 5.24917 5.28711 5.31383 5.36437 5.43512 5.54709 5.56851 5.66379 5.79647 6.00010 6.31758 6.40301 6.47957 6.63291 7.07285 7.16333 7.48118 7.89196 8.38906 9.18476 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035658 B = 0.002070 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.048404 B =13525.966137 C =13903.120579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.077 4.077 13 C 0.135 3.865 14 N -0.708 5.708 15 C 0.585 3.415 16 O -0.577 6.577 17 C -0.069 4.069 18 C -0.071 4.071 19 C -0.270 4.270 20 C 0.590 3.410 21 N -0.828 5.828 22 O -0.608 6.608 23 C 0.126 3.874 24 N -0.503 5.503 25 H 0.442 0.558 26 C -0.115 4.115 27 C 0.140 3.860 28 H 0.249 0.751 29 H 0.001 0.999 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.126 0.874 38 H 0.419 0.581 39 H 0.410 0.590 40 H 0.244 0.756 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.022 0.978 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -25.774 -4.720 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.164 4.164 12 C -0.095 4.095 13 C 0.012 3.988 14 N -0.360 5.360 15 C 0.373 3.627 16 O -0.457 6.457 17 C -0.180 4.180 18 C -0.098 4.098 19 C -0.280 4.280 20 C 0.377 3.623 21 N -0.392 5.392 22 O -0.490 6.490 23 C -0.018 4.018 24 N -0.099 5.099 25 H 0.284 0.716 26 C -0.153 4.153 27 C 0.015 3.985 28 H 0.058 0.942 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.144 0.856 38 H 0.251 0.749 39 H 0.242 0.758 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.040 0.960 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.318 -25.330 -3.228 25.640 hybrid contribution 0.128 1.368 -0.656 1.522 sum 2.446 -23.962 -3.884 24.398 Atomic orbital electron populations 1.70155 1.06537 1.25831 1.55460 1.25757 0.96035 1.01386 1.01481 0.85412 0.77634 0.79567 0.78270 1.20029 1.22124 1.20737 1.19453 0.92757 0.86242 1.40741 0.91792 1.44319 1.35954 1.02498 1.50848 1.20559 0.87906 0.97452 0.88949 1.21990 1.00862 0.95192 0.98317 1.21148 0.98966 0.93814 0.95615 1.21340 1.01332 0.80156 0.96006 1.45717 1.72515 1.07227 1.10503 1.17335 0.76112 0.83423 0.85818 1.90845 1.53416 1.85052 1.16376 1.19626 1.19965 0.93726 0.84719 1.21058 0.98444 0.90804 0.99466 1.19588 1.20837 0.93222 0.94327 1.17614 0.74576 0.85455 0.84633 1.43420 1.74732 1.11220 1.09843 1.90809 1.53691 1.82084 1.22460 1.23219 0.96246 0.82890 0.99432 1.41722 1.52201 1.09440 1.06575 0.71568 1.21946 0.96705 0.99527 0.97172 1.21084 0.97375 0.85859 0.94224 0.94166 0.98140 0.93251 0.91320 0.93309 0.90006 0.92400 0.91719 0.75194 0.85591 0.74904 0.75790 0.74034 0.93323 0.89358 0.96018 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 11.19 21.65 0.24 -54.11 16 2 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 3 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.26 -14.03 9.58 84.03 0.81 -13.23 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -29.22 2.99 -699.11 -2.09 -31.31 16 10 C 0.18 8.14 5.30 86.37 0.46 8.60 16 11 C -0.12 -4.30 5.36 30.67 0.16 -4.13 16 12 C -0.08 -2.04 2.19 -10.76 -0.02 -2.06 16 13 C 0.14 3.30 5.06 86.38 0.44 3.74 16 14 N -0.71 -13.59 5.27 -466.95 -2.46 -16.05 16 15 C 0.58 14.38 7.79 86.49 0.67 15.06 16 16 O -0.58 -20.02 16.86 -4.27 -0.07 -20.09 16 17 C -0.07 -1.30 6.99 40.01 0.28 -1.02 16 18 C -0.07 -1.64 10.37 22.59 0.23 -1.41 16 19 C -0.27 -4.26 6.13 -20.12 -0.12 -4.38 16 20 C 0.59 10.69 8.09 86.66 0.70 11.39 16 21 N -0.83 -5.03 8.86 -175.90 -1.56 -6.59 16 22 O -0.61 -18.24 17.76 -4.07 -0.07 -18.31 16 23 C 0.13 0.58 11.43 84.31 0.96 1.54 16 24 N -0.50 -3.56 5.91 -183.34 -1.08 -4.64 16 25 H 0.44 -0.07 8.14 -92.71 -0.75 -0.82 16 26 C -0.11 -3.12 5.25 30.67 0.16 -2.96 16 27 C 0.14 5.10 6.52 86.36 0.56 5.66 16 28 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 29 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 4.80 6.73 -92.71 -0.62 4.18 16 37 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.42 -1.22 7.74 -92.71 -0.72 -1.94 16 39 H 0.41 1.97 8.93 -92.71 -0.83 1.15 16 40 H 0.24 -1.97 7.44 -2.91 -0.02 -1.99 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.64 7.15 -2.38 -0.02 1.63 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 Total: -1.00 -87.21 364.23 -1.20 -88.41 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.85 Total: 1.90 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.71 Total: 14.39 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.95 Total: -112.70 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.14 Total: -38.40 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -87.21 -1.20 -88.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001974451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.264 kcal (2) G-P(sol) polarization free energy of solvation -87.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds