Wall clock time and date at job start Tue Mar 31 2020 12:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00168 * 2 1 4 4 H 1.48499 * 109.46806 * 269.99856 * 3 2 1 5 5 H 1.48500 * 109.46997 * 29.99206 * 3 2 1 6 6 H 1.48493 * 109.47596 * 149.99839 * 3 2 1 7 7 C 1.38813 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00434 * 163.07782 * 7 2 1 9 9 N 1.36939 * 119.99720 * 343.07593 * 7 2 1 10 10 C 1.46929 * 120.63074 * 331.84368 * 9 7 2 11 11 C 1.53191 * 108.77701 * 233.58493 * 10 9 7 12 12 C 1.53040 * 109.31589 * 305.36860 * 11 10 9 13 13 N 1.46494 * 109.46348 * 181.38579 * 12 11 10 14 14 C 1.34774 * 120.00351 * 155.00135 * 13 12 11 15 15 O 1.21626 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.47323 * 120.00212 * 179.97438 * 14 13 12 17 17 C 1.36684 * 126.19651 * 179.97438 * 16 14 13 18 18 N 1.34502 * 106.73142 * 179.97438 * 17 16 14 19 19 C 1.36621 * 107.93694 * 0.08550 * 18 17 16 20 20 N 1.29490 * 108.89800 * 359.62501 * 19 18 17 21 21 C 1.51097 * 122.83913 * 179.86197 * 19 18 17 22 22 O 1.43448 * 107.76122 * 345.50932 * 21 19 18 23 23 C 1.43020 * 114.08237 * 49.73493 * 22 21 19 24 24 C 1.46644 * 128.72035 * 180.16494 * 18 17 16 25 25 C 1.53046 * 109.53926 * 61.36132 * 12 11 10 26 26 C 1.46927 * 120.63214 * 151.82385 * 9 7 2 27 27 H 0.96996 * 120.00197 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58361 * 113.80058 * 10 9 7 29 29 H 1.08995 * 109.70208 * 353.44895 * 10 9 7 30 30 H 1.09001 * 109.49591 * 185.41500 * 11 10 9 31 31 H 1.09000 * 109.49609 * 65.31687 * 11 10 9 32 32 H 1.09003 * 109.46054 * 301.35819 * 12 11 10 33 33 H 0.97004 * 119.99794 * 334.99858 * 13 12 11 34 34 H 1.07998 * 126.63785 * 359.93153 * 17 16 14 35 35 H 1.09003 * 109.80274 * 225.94780 * 21 19 18 36 36 H 1.08993 * 109.80594 * 105.07761 * 21 19 18 37 37 H 1.09005 * 109.42784 * 169.47194 * 23 22 21 38 38 H 1.08998 * 109.39223 * 49.59469 * 23 22 21 39 39 H 1.08997 * 109.73577 * 283.21759 * 24 18 17 40 40 H 1.09003 * 109.73818 * 43.86348 * 24 18 17 41 41 H 1.08998 * 109.49545 * 58.58537 * 25 12 11 42 42 H 1.08995 * 109.49938 * 178.68583 * 25 12 11 43 43 H 1.08996 * 109.58710 * 246.20116 * 26 9 7 44 44 H 1.09002 * 109.58196 * 6.48313 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2261 -2.3398 1.2680 11 6 0.4974 -3.3189 2.4145 12 6 0.8119 -4.7006 1.8366 13 7 1.0394 -5.6473 2.9311 14 6 0.8361 -6.9652 2.7355 15 8 0.4633 -7.3685 1.6504 16 6 1.0655 -7.9173 3.8362 17 6 0.8993 -9.2728 3.7787 18 7 1.2159 -9.7536 4.9943 19 6 1.5699 -8.6974 5.7854 20 7 1.4860 -7.6072 5.0917 21 6 1.9869 -8.8584 7.2287 22 8 1.6097 -10.1771 7.6487 23 6 2.0268 -11.2151 6.7575 24 6 1.2087 -11.1436 5.4613 25 6 2.0674 -4.6173 0.9653 26 6 1.8138 -3.6529 -0.1977 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6770 -2.6404 0.7368 29 1 0.0967 -1.3345 1.6687 30 1 -0.3833 -3.3837 3.0536 31 1 1.3471 -2.9673 2.9997 32 1 -0.0281 -5.0408 1.2310 33 1 1.3365 -5.3256 3.7967 34 1 0.5758 -9.8467 2.9230 35 1 1.4798 -8.1156 7.8446 36 1 3.0665 -8.7374 7.3169 37 1 1.8713 -12.1842 7.2316 38 1 3.0846 -11.0901 6.5262 39 1 0.1843 -11.4618 5.6545 40 1 1.6579 -11.7882 4.7056 41 1 2.9023 -4.2534 1.5641 42 1 2.3042 -5.6062 0.5729 43 1 1.0403 -4.0606 -0.8484 44 1 2.7332 -3.5131 -0.7663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003152147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:42 Heat of formation + Delta-G solvation = -17.752814 kcal Electronic energy + Delta-G solvation = -26688.550196 eV Core-core repulsion = 22834.582923 eV Total energy + Delta-G solvation = -3853.967273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.56418 -40.79572 -39.29639 -38.77018 -36.00709 -35.32159 -33.89309 -32.04891 -31.67731 -31.12927 -30.71682 -27.64299 -26.72252 -24.86867 -24.44751 -23.89607 -23.05602 -21.33890 -20.89048 -20.61216 -19.22341 -18.64570 -17.67213 -17.58227 -17.18001 -16.87581 -16.71291 -16.14112 -15.92548 -15.70273 -15.52267 -15.35861 -15.08893 -14.93517 -14.74128 -14.41694 -14.29064 -14.09336 -13.71850 -13.21659 -13.01763 -12.86180 -12.62284 -12.52820 -12.28066 -12.23810 -12.03053 -11.88063 -11.61338 -11.56063 -11.39988 -11.17485 -11.05976 -10.77207 -10.55622 -10.07250 -9.57046 -8.70979 -7.87582 -5.33352 0.47427 1.20807 1.42563 1.48441 1.49658 1.60043 2.23065 2.43942 2.52387 2.65806 2.95088 3.28460 3.37720 3.61895 3.65334 3.80977 3.93761 4.00188 4.04409 4.14859 4.30398 4.31825 4.35046 4.44697 4.53926 4.63756 4.65607 4.71078 4.78964 4.84512 4.88274 5.00125 5.03814 5.13556 5.27803 5.30765 5.45699 5.52698 5.64198 5.68865 5.71838 5.95423 6.38913 6.47242 6.76872 7.14171 7.22760 7.83497 8.37205 9.19868 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.002346 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.054135 B =11929.946487 C =12356.458624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.129 4.129 12 C 0.162 3.838 13 N -0.701 5.701 14 C 0.599 3.401 15 O -0.582 6.582 16 C -0.098 4.098 17 C 0.059 3.941 18 N -0.450 5.450 19 C 0.164 3.836 20 N -0.470 5.470 21 C 0.154 3.846 22 O -0.383 6.383 23 C 0.043 3.957 24 C 0.060 3.940 25 C -0.123 4.123 26 C 0.146 3.854 27 H 0.251 0.749 28 H -0.003 1.003 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.209 0.791 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.011 0.989 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -26.682 17.943 32.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.168 4.168 12 C 0.058 3.942 13 N -0.350 5.350 14 C 0.387 3.613 15 O -0.463 6.463 16 C -0.226 4.226 17 C -0.083 4.083 18 N -0.132 5.132 19 C -0.101 4.101 20 N -0.191 5.191 21 C 0.076 3.924 22 O -0.300 6.300 23 C -0.034 4.034 24 C -0.060 4.060 25 C -0.163 4.163 26 C 0.020 3.980 27 H 0.060 0.940 28 H 0.015 0.985 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.225 0.775 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.170 0.830 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.534 -26.216 17.660 31.933 hybrid contribution 0.013 0.644 -0.813 1.037 sum 4.547 -25.573 16.847 30.959 Atomic orbital electron populations 1.70184 1.06715 1.25992 1.55267 1.25845 0.96083 1.01608 1.01078 0.85239 0.78073 0.79329 0.77557 1.21189 1.21719 1.19454 1.19511 0.92882 0.85841 1.41176 0.91475 1.44347 1.35955 1.02265 1.50718 1.20545 0.87838 0.97599 0.88591 1.22263 1.01736 0.93783 0.99055 1.20721 0.97464 0.88261 0.87782 1.45908 1.67611 1.05769 1.15742 1.17219 0.76177 0.82078 0.85835 1.90760 1.49730 1.79106 1.26691 1.20560 1.15598 0.93027 0.93459 1.22681 1.01285 0.94294 0.90034 1.45496 1.48388 1.10271 1.09061 1.24855 1.04831 0.82247 0.98192 1.70118 1.17953 1.28152 1.02882 1.21470 1.01986 0.85711 0.83277 1.88166 1.79875 1.14731 1.47232 1.23292 0.98079 0.93653 0.88342 1.23283 1.05300 0.77907 0.99520 1.22174 0.97521 0.98821 0.97789 1.20959 0.97540 0.85826 0.93680 0.93979 0.98497 0.91737 0.90823 0.91457 0.92007 0.75216 0.77461 0.84703 0.87658 0.82988 0.90598 0.87273 0.85028 0.91877 0.92097 0.97147 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 11.19 21.65 0.24 -56.12 16 2 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 3 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.26 -14.92 9.58 84.03 0.81 -14.12 16 8 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 9 N -0.61 -32.05 2.99 -699.10 -2.09 -34.14 16 10 C 0.18 9.06 5.30 86.36 0.46 9.52 16 11 C -0.13 -5.08 5.55 30.67 0.17 -4.91 16 12 C 0.16 6.19 2.42 45.02 0.11 6.29 16 13 N -0.70 -23.40 5.07 -445.76 -2.26 -25.66 16 14 C 0.60 20.60 7.77 86.63 0.67 21.27 16 15 O -0.58 -23.29 16.54 -4.11 -0.07 -23.36 16 16 C -0.10 -2.78 6.99 40.53 0.28 -2.50 16 17 C 0.06 1.23 11.38 83.92 0.95 2.19 16 18 N -0.45 -7.03 3.12 -512.42 -1.60 -8.62 16 19 C 0.16 3.10 7.79 138.03 1.08 4.18 16 20 N -0.47 -12.18 10.99 -175.89 -1.93 -14.11 16 21 C 0.15 1.74 7.29 71.36 0.52 2.26 16 22 O -0.38 -3.84 10.78 -148.98 -1.61 -5.45 16 23 C 0.04 0.14 6.81 72.13 0.49 0.64 16 24 C 0.06 0.31 7.28 86.50 0.63 0.94 16 25 C -0.12 -4.80 5.65 30.67 0.17 -4.62 16 26 C 0.15 6.64 6.52 86.36 0.56 7.20 16 27 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 29 H 0.06 3.58 6.06 -2.39 -0.01 3.57 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 33 H 0.41 12.45 8.31 -92.71 -0.77 11.68 16 34 H 0.21 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.15 -0.40 8.14 -2.38 -0.02 -0.42 16 38 H 0.08 0.18 8.09 -2.39 -0.02 0.16 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 Total: -1.00 -77.35 358.64 0.28 -77.07 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.25 Total: 17.01 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 7.32 Total: 25.87 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -7.64 Total: -138.66 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.67 Total: -28.81 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.35 0.28 -77.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003152147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.315 kcal (2) G-P(sol) polarization free energy of solvation -77.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds