Wall clock time and date at job start Tue Mar 31 2020 12:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46495 * 109.46476 * 178.61195 * 12 11 10 14 14 C 1.34777 * 120.00118 * 204.99626 * 13 12 11 15 15 O 1.21570 * 120.00131 * 0.02562 * 14 13 12 16 16 C 1.47719 * 119.99784 * 179.97438 * 14 13 12 17 17 C 1.41292 * 125.95117 * 180.02562 * 16 14 13 18 18 C 1.34859 * 107.70911 * 179.97438 * 17 16 14 19 19 N 1.36393 * 107.92118 * 0.11598 * 18 17 16 20 20 N 1.32115 * 125.95390 * 359.69228 * 16 14 13 21 21 C 1.46723 * 123.62262 * 179.76892 * 19 18 17 22 22 C 1.53531 * 107.95910 * 343.02905 * 21 19 18 23 23 C 1.53224 * 109.30168 * 47.28750 * 22 21 19 24 24 O 1.36030 * 128.63888 * 180.15629 * 18 17 16 25 25 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 26 26 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 27 27 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 29 29 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 30 30 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 31 31 H 1.08998 * 109.49941 * 294.60655 * 11 10 9 32 32 H 1.09009 * 109.46191 * 58.63514 * 12 11 10 33 33 H 0.96996 * 120.00028 * 24.99554 * 13 12 11 34 34 H 1.08003 * 126.14839 * 359.94553 * 17 16 14 35 35 H 1.08996 * 109.76582 * 223.41335 * 21 19 18 36 36 H 1.09002 * 109.80948 * 102.66786 * 21 19 18 37 37 H 1.09006 * 109.49707 * 287.33850 * 22 21 19 38 38 H 1.09001 * 109.50339 * 167.23848 * 22 21 19 39 39 H 1.08998 * 109.50520 * 175.46489 * 23 22 21 40 40 H 1.09001 * 109.50506 * 55.34639 * 23 22 21 41 41 H 1.09000 * 109.50000 * 181.31601 * 25 12 11 42 42 H 1.09003 * 109.49095 * 301.40810 * 25 12 11 43 43 H 1.09000 * 109.47125 * 113.75280 * 26 9 7 44 44 H 1.09000 * 109.71403 * 353.46652 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0320 -5.6559 2.9193 14 6 -0.0147 -6.2787 3.4962 15 8 -1.1450 -6.0525 3.1098 16 6 0.2114 -7.2372 4.5973 17 6 -0.7884 -7.9577 5.2883 18 6 -0.1763 -8.7219 6.2158 19 7 1.1660 -8.4978 6.1248 20 7 1.3843 -7.5747 5.1033 21 6 2.1591 -9.1533 6.9833 22 6 1.4232 -9.7373 8.1977 23 6 0.1842 -10.5014 7.7197 24 8 -0.7339 -9.5819 7.1102 25 6 0.4929 -3.3255 2.4083 26 6 0.2251 -2.3429 1.2640 27 1 -0.4849 0.8401 0.0004 28 1 2.7376 -3.5124 -0.7656 29 1 1.0448 -4.0591 -0.8569 30 1 2.3024 -5.6088 0.5642 31 1 2.8992 -4.2594 1.5609 32 1 -0.0313 -5.0433 1.2186 33 1 1.9338 -5.8367 3.2274 34 1 -1.8518 -7.9055 5.1068 35 1 2.8977 -8.4239 7.3157 36 1 2.6533 -9.9533 6.4321 37 1 1.1182 -8.9285 8.8618 38 1 2.0863 -10.4173 8.7325 39 1 -0.2960 -10.9848 8.5705 40 1 0.4806 -11.2562 6.9913 41 1 -0.3893 -3.3916 3.0451 42 1 1.3415 -2.9764 2.9966 43 1 -0.6770 -2.6412 0.7298 44 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003281278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:32 Heat of formation + Delta-G solvation = 32.064224 kcal Electronic energy + Delta-G solvation = -26685.740067 eV Core-core repulsion = 22833.933023 eV Total energy + Delta-G solvation = -3851.807044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07504 -39.68858 -38.61769 -37.17837 -35.10956 -34.37778 -32.22558 -31.26248 -29.98006 -29.73376 -29.34648 -26.94935 -25.19837 -24.08907 -23.00026 -22.17287 -21.46831 -20.37609 -19.92590 -19.28508 -18.40627 -17.06427 -16.82337 -16.40335 -16.04373 -15.81760 -15.29878 -15.23162 -14.79420 -14.73141 -14.32171 -13.99896 -13.71615 -13.49271 -13.42309 -12.93445 -12.91875 -12.55602 -12.34049 -12.13667 -11.85612 -11.71601 -11.43860 -11.08828 -11.06034 -10.89322 -10.67929 -10.34934 -10.21489 -10.05535 -9.94176 -9.70586 -9.49182 -9.42851 -8.70749 -8.65188 -8.37024 -6.63019 -5.73544 -3.16564 1.20635 1.79981 2.00032 2.57122 3.36670 3.42449 3.47895 3.48908 3.49813 3.63400 3.84217 4.20107 4.24635 4.53786 4.54501 4.62354 4.77742 4.88300 5.12408 5.14362 5.23008 5.37890 5.46943 5.51651 5.65523 5.69094 5.70659 5.89512 6.14000 6.19597 6.30212 6.39638 6.50289 6.66453 6.71336 6.83468 6.89849 6.95502 6.99549 7.14819 7.43767 7.73257 7.79680 7.84193 8.38787 8.50355 9.26056 9.89399 10.46410 11.35113 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.002348 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.528321 B =11920.135907 C =12075.705207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.150 3.850 13 N -0.707 5.707 14 C 0.595 3.405 15 O -0.523 6.523 16 C 0.059 3.941 17 C -0.226 4.226 18 C 0.260 3.740 19 N -0.396 5.396 20 N -0.246 5.246 21 C 0.128 3.872 22 C -0.176 4.176 23 C 0.049 3.951 24 O -0.286 6.286 25 C -0.147 4.147 26 C 0.174 3.826 27 H 0.255 0.745 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.401 0.599 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.022 0.978 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -23.224 17.336 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.047 3.953 13 N -0.357 5.357 14 C 0.378 3.622 15 O -0.396 6.396 16 C -0.109 4.109 17 C -0.256 4.256 18 C 0.095 3.905 19 N -0.194 5.194 20 N -0.076 5.076 21 C 0.007 3.993 22 C -0.214 4.214 23 C -0.027 4.027 24 O -0.193 6.193 25 C -0.188 4.188 26 C 0.047 3.953 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.184 0.816 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.443 -22.824 17.119 28.874 hybrid contribution 0.324 0.431 0.526 0.753 sum 4.768 -22.393 17.645 28.905 Atomic orbital electron populations 1.70026 1.05241 1.25633 1.53628 1.25062 0.95286 0.98417 1.00870 0.86372 0.78891 0.83422 0.78061 1.20907 1.21657 1.21085 1.19124 0.92463 0.84785 1.42005 0.91732 1.44091 1.35869 1.01527 1.50067 1.20833 0.98014 0.86674 0.92288 1.22342 0.96636 0.99827 0.99077 1.21132 0.99003 0.88504 0.86645 1.46210 1.09120 1.43565 1.36853 1.16876 0.85312 0.79456 0.80593 1.90827 1.22427 1.63826 1.62547 1.22157 0.90726 0.99404 0.98594 1.20245 1.01311 1.04560 0.99454 1.19426 0.83238 0.94742 0.93138 1.49287 1.04947 1.35789 1.29331 1.77576 1.21101 1.06969 1.01956 1.21961 0.90305 0.97608 0.89381 1.22652 0.98572 1.02385 0.97792 1.23121 0.90235 0.90450 0.98850 1.86668 1.33631 1.45216 1.53765 1.22583 1.00632 0.95018 1.00539 1.20762 0.88706 0.98010 0.87776 0.93538 0.92341 0.96120 0.92509 0.91779 0.89695 0.76430 0.81599 0.87752 0.89103 0.89129 0.87053 0.86169 0.90863 0.92662 0.92591 0.96027 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 11.20 55.49 0.62 -26.02 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -7.02 9.58 -15.06 -0.14 -7.17 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -15.05 3.00 -172.30 -0.52 -15.56 16 10 C 0.15 3.12 6.51 -3.71 -0.02 3.10 16 11 C -0.14 -2.40 5.55 -26.61 -0.15 -2.54 16 12 C 0.15 2.74 2.42 -67.89 -0.16 2.57 16 13 N -0.71 -11.24 5.07 -54.75 -0.28 -11.52 16 14 C 0.60 10.13 7.79 -12.39 -0.10 10.03 16 15 O -0.52 -10.54 16.56 5.30 0.09 -10.45 16 16 C 0.06 0.88 7.10 -82.71 -0.59 0.29 16 17 C -0.23 -3.11 10.58 -39.62 -0.42 -3.52 16 18 C 0.26 3.02 7.57 -16.72 -0.13 2.90 16 19 N -0.40 -4.22 4.08 -60.93 -0.25 -4.47 16 20 N -0.25 -3.28 12.32 33.43 0.41 -2.87 16 21 C 0.13 0.72 7.41 -3.64 -0.03 0.69 16 22 C -0.18 -0.56 6.16 -26.34 -0.16 -0.73 16 23 C 0.05 0.22 7.00 37.27 0.26 0.48 16 24 O -0.29 -2.68 10.65 -19.84 -0.21 -2.89 16 25 C -0.15 -3.05 5.65 -26.61 -0.15 -3.20 16 26 C 0.17 4.31 5.30 -3.70 -0.02 4.29 16 27 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.70 7.58 -51.92 -0.39 1.30 16 33 H 0.40 5.56 8.30 -40.82 -0.34 5.23 16 34 H 0.17 2.19 8.06 -52.48 -0.42 1.76 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -34.25 359.17 -8.15 -42.40 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.50 Total: 1.91 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.89 Total: 7.17 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.01 Total: -60.44 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.12 Total: -13.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.25 -8.15 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003281278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.467 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds