Wall clock time and date at job start Tue Mar 31 2020 12:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46495 * 109.46476 * 178.61195 * 12 11 10 14 14 C 1.34777 * 120.00118 * 204.99626 * 13 12 11 15 15 O 1.21570 * 120.00131 * 0.02562 * 14 13 12 16 16 C 1.47719 * 119.99784 * 179.97438 * 14 13 12 17 17 C 1.41292 * 125.95117 * 180.02562 * 16 14 13 18 18 C 1.34859 * 107.70911 * 179.97438 * 17 16 14 19 19 N 1.36393 * 107.92118 * 0.11598 * 18 17 16 20 20 N 1.32115 * 125.95390 * 359.69228 * 16 14 13 21 21 C 1.46723 * 123.62262 * 179.76892 * 19 18 17 22 22 C 1.53531 * 107.95910 * 343.02905 * 21 19 18 23 23 C 1.53224 * 109.30168 * 47.28750 * 22 21 19 24 24 O 1.36030 * 128.63888 * 180.15629 * 18 17 16 25 25 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 26 26 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 27 27 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 29 29 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 30 30 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 31 31 H 1.08998 * 109.49941 * 294.60655 * 11 10 9 32 32 H 1.09009 * 109.46191 * 58.63514 * 12 11 10 33 33 H 0.96996 * 120.00028 * 24.99554 * 13 12 11 34 34 H 1.08003 * 126.14839 * 359.94553 * 17 16 14 35 35 H 1.08996 * 109.76582 * 223.41335 * 21 19 18 36 36 H 1.09002 * 109.80948 * 102.66786 * 21 19 18 37 37 H 1.09006 * 109.49707 * 287.33850 * 22 21 19 38 38 H 1.09001 * 109.50339 * 167.23848 * 22 21 19 39 39 H 1.08998 * 109.50520 * 175.46489 * 23 22 21 40 40 H 1.09001 * 109.50506 * 55.34639 * 23 22 21 41 41 H 1.09000 * 109.50000 * 181.31601 * 25 12 11 42 42 H 1.09003 * 109.49095 * 301.40810 * 25 12 11 43 43 H 1.09000 * 109.47125 * 113.75280 * 26 9 7 44 44 H 1.09000 * 109.71403 * 353.46652 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0320 -5.6559 2.9193 14 6 -0.0147 -6.2787 3.4962 15 8 -1.1450 -6.0525 3.1098 16 6 0.2114 -7.2372 4.5973 17 6 -0.7884 -7.9577 5.2883 18 6 -0.1763 -8.7219 6.2158 19 7 1.1660 -8.4978 6.1248 20 7 1.3843 -7.5747 5.1033 21 6 2.1591 -9.1533 6.9833 22 6 1.4232 -9.7373 8.1977 23 6 0.1842 -10.5014 7.7197 24 8 -0.7339 -9.5819 7.1102 25 6 0.4929 -3.3255 2.4083 26 6 0.2251 -2.3429 1.2640 27 1 -0.4849 0.8401 0.0004 28 1 2.7376 -3.5124 -0.7656 29 1 1.0448 -4.0591 -0.8569 30 1 2.3024 -5.6088 0.5642 31 1 2.8992 -4.2594 1.5609 32 1 -0.0313 -5.0433 1.2186 33 1 1.9338 -5.8367 3.2274 34 1 -1.8518 -7.9055 5.1068 35 1 2.8977 -8.4239 7.3157 36 1 2.6533 -9.9533 6.4321 37 1 1.1182 -8.9285 8.8618 38 1 2.0863 -10.4173 8.7325 39 1 -0.2960 -10.9848 8.5705 40 1 0.4806 -11.2562 6.9913 41 1 -0.3893 -3.3916 3.0451 42 1 1.3415 -2.9764 2.9966 43 1 -0.6770 -2.6412 0.7298 44 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003281278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:31 Heat of formation + Delta-G solvation = 6.679674 kcal Electronic energy + Delta-G solvation = -26686.840824 eV Core-core repulsion = 22833.933023 eV Total energy + Delta-G solvation = -3852.907801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.92497 -40.96839 -39.53211 -38.80115 -36.06395 -35.67180 -33.98382 -32.30568 -31.65649 -31.05986 -30.57648 -27.72841 -26.82908 -25.17344 -24.05320 -23.89852 -22.97902 -21.42199 -20.93823 -20.67239 -19.43296 -18.71856 -17.82420 -17.37598 -17.22297 -16.78088 -16.60963 -16.24003 -15.99892 -15.77568 -15.57358 -15.33956 -15.16862 -14.98992 -14.71636 -14.31542 -14.31074 -14.06646 -13.39976 -13.19311 -13.00509 -12.67982 -12.64068 -12.55446 -12.44266 -12.13607 -12.12351 -12.08407 -11.89094 -11.85135 -11.55073 -11.49609 -11.17090 -10.56488 -10.34079 -10.02456 -9.61073 -8.69650 -7.85703 -5.32058 0.16193 1.00405 1.04580 1.48509 1.51422 1.58171 1.78494 2.21658 2.29046 2.53156 3.00802 3.30077 3.51016 3.56854 3.68107 3.84613 3.95802 3.98837 4.06596 4.18720 4.30281 4.32789 4.43195 4.47742 4.53617 4.58676 4.67353 4.69210 4.78741 4.86431 4.92506 5.02886 5.05826 5.07696 5.13344 5.23831 5.32620 5.45630 5.47998 5.65540 5.71137 6.12575 6.16720 6.40245 6.53775 7.08604 7.14900 7.85771 8.38930 9.21496 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.002348 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.528321 B =11920.135907 C =12075.705207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.143 3.857 11 C -0.122 4.122 12 C 0.160 3.840 13 N -0.694 5.694 14 C 0.597 3.403 15 O -0.563 6.563 16 C 0.039 3.961 17 C -0.256 4.256 18 C 0.273 3.727 19 N -0.384 5.384 20 N -0.250 5.250 21 C 0.111 3.889 22 C -0.165 4.165 23 C 0.035 3.965 24 O -0.299 6.299 25 C -0.132 4.132 26 C 0.183 3.817 27 H 0.249 0.751 28 H 0.069 0.931 29 H 0.015 0.985 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.159 0.841 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.060 0.940 43 H -0.007 1.007 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -25.645 19.325 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.017 3.983 11 C -0.161 4.161 12 C 0.056 3.944 13 N -0.345 5.345 14 C 0.381 3.619 15 O -0.439 6.439 16 C -0.127 4.127 17 C -0.286 4.286 18 C 0.106 3.894 19 N -0.183 5.183 20 N -0.082 5.082 21 C -0.007 4.007 22 C -0.203 4.203 23 C -0.039 4.039 24 O -0.206 6.206 25 C -0.172 4.172 26 C 0.057 3.943 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.252 0.748 34 H 0.176 0.824 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.011 0.989 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.358 -25.301 19.131 32.562 hybrid contribution -0.531 1.004 0.013 1.136 sum 6.827 -24.296 19.145 31.677 Atomic orbital electron populations 1.70202 1.06870 1.25934 1.55393 1.25887 0.96030 1.01804 1.01282 0.85302 0.77475 0.78988 0.78441 1.19792 1.22358 1.20335 1.19527 0.92976 0.85769 1.40928 0.90887 1.44341 1.35665 1.02712 1.50630 1.21031 0.98059 0.85468 0.93766 1.22153 0.95959 1.00579 0.97451 1.20814 0.99146 0.87336 0.87088 1.45924 1.09726 1.42710 1.36094 1.17164 0.84713 0.79354 0.80687 1.90800 1.23973 1.65234 1.63921 1.21708 0.91804 1.00205 0.98950 1.20287 1.01214 1.06051 1.01080 1.19291 0.83478 0.94177 0.92504 1.49701 1.05677 1.34479 1.28433 1.77464 1.20284 1.07687 1.02764 1.22567 0.89989 0.98331 0.89832 1.22688 0.98413 1.02638 0.96577 1.23618 0.90548 0.89888 0.99875 1.86686 1.35413 1.45413 1.53093 1.22333 1.00447 0.95683 0.98757 1.20467 0.87979 0.97204 0.88687 0.94163 0.91243 0.96714 0.88985 0.90731 0.91594 0.74806 0.82380 0.86613 0.86894 0.89877 0.82933 0.83324 0.89729 0.93396 0.92110 0.98910 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 11.20 21.65 0.24 -57.24 16 2 C -0.05 -3.13 4.92 84.86 0.42 -2.72 16 3 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.26 -14.54 9.58 84.03 0.81 -13.74 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.61 -31.38 3.00 -699.03 -2.10 -33.48 16 10 C 0.14 5.87 6.51 86.36 0.56 6.43 16 11 C -0.12 -3.97 5.55 30.67 0.17 -3.80 16 12 C 0.16 5.81 2.42 45.02 0.11 5.92 16 13 N -0.69 -21.59 5.07 -445.39 -2.26 -23.85 16 14 C 0.60 20.62 7.79 86.75 0.68 21.30 16 15 O -0.56 -23.67 16.56 -3.94 -0.07 -23.74 16 16 C 0.04 1.17 7.10 42.36 0.30 1.47 16 17 C -0.26 -7.17 10.58 22.24 0.24 -6.94 16 18 C 0.27 6.04 7.57 83.21 0.63 6.67 16 19 N -0.38 -7.39 4.08 -457.17 -1.87 -9.26 16 20 N -0.25 -6.34 12.32 -48.15 -0.59 -6.94 16 21 C 0.11 0.85 7.41 86.52 0.64 1.49 16 22 C -0.17 -0.38 6.16 30.85 0.19 -0.19 16 23 C 0.03 0.19 7.00 72.06 0.50 0.69 16 24 O -0.30 -5.06 10.65 -93.89 -1.00 -6.06 16 25 C -0.13 -5.58 5.65 30.67 0.17 -5.41 16 26 C 0.18 9.50 5.30 86.36 0.46 9.95 16 27 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.69 7.58 -2.38 -0.02 2.67 16 33 H 0.42 10.76 8.30 -92.71 -0.77 9.99 16 34 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.15 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 Total: -1.00 -78.00 359.17 0.51 -77.49 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.25 Total: 14.31 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 5.87 Total: 21.15 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -6.57 Total: -130.75 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.07 Total: -29.80 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.00 0.51 -77.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003281278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.167 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds