Wall clock time and date at job start Tue Mar 31 2020 12:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99967 * 2 1 4 4 H 1.48493 * 109.47330 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.47340 * 30.00605 * 3 2 1 6 6 H 1.48505 * 109.47195 * 150.00257 * 3 2 1 7 7 C 1.38814 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65033 * 347.72911 * 9 7 2 11 11 C 1.54913 * 104.83327 * 204.08848 * 10 9 7 12 12 C 1.55155 * 101.58007 * 322.98466 * 11 10 9 13 13 C 1.47027 * 125.64725 * 167.67795 * 9 7 2 14 14 H 1.08997 * 109.88066 * 59.41063 * 13 9 7 15 15 C 1.52995 * 109.88473 * 298.39951 * 13 9 7 16 16 C 1.53041 * 109.46235 * 301.62062 * 15 13 9 17 17 C 1.53190 * 109.34259 * 178.59560 * 16 15 13 18 18 N 1.46998 * 108.73418 * 54.62447 * 17 16 15 19 19 C 1.34783 * 120.61308 * 126.38763 * 18 17 16 20 20 O 1.21497 * 119.99845 * 5.97342 * 19 18 17 21 21 C 1.48278 * 119.99742 * 185.97197 * 19 18 17 22 22 C 1.47487 * 128.71077 * 186.53932 * 21 19 18 23 23 N 1.30639 * 102.71917 * 179.85340 * 22 21 19 24 24 O 1.20837 * 109.61819 * 0.41941 * 23 22 21 25 25 N 1.20904 * 115.90808 * 359.70492 * 24 23 22 26 26 C 1.46925 * 118.75776 * 306.40728 * 18 17 16 27 27 C 1.53047 * 109.46077 * 181.55616 * 15 13 9 28 28 H 0.96998 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.37093 * 322.92500 * 10 9 7 30 30 H 1.09008 * 110.37130 * 85.13921 * 10 9 7 31 31 H 1.09000 * 111.00429 * 81.06364 * 11 10 9 32 32 H 1.09005 * 111.00126 * 204.91589 * 11 10 9 33 33 H 1.08997 * 110.72629 * 277.13732 * 12 11 10 34 34 H 1.09001 * 110.71461 * 153.86322 * 12 11 10 35 35 H 1.08994 * 109.45029 * 61.58820 * 15 13 9 36 36 H 1.08995 * 109.49895 * 298.56960 * 16 15 13 37 37 H 1.09000 * 109.49544 * 58.62829 * 16 15 13 38 38 H 1.09001 * 109.58780 * 174.44100 * 17 16 15 39 39 H 1.08995 * 109.58548 * 294.86640 * 17 16 15 40 40 H 1.08007 * 128.64156 * 359.97438 * 22 21 19 41 41 H 1.09000 * 109.58806 * 293.82826 * 26 18 17 42 42 H 1.08996 * 109.70480 * 173.46383 * 26 18 17 43 43 H 1.09003 * 109.49081 * 301.33815 * 27 15 13 44 44 H 1.08994 * 109.49667 * 61.40205 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1177 -2.5469 0.2546 11 6 -0.2744 -4.0061 0.7507 12 6 0.7690 -4.7471 -0.1265 13 6 1.9079 -3.7137 -0.2560 14 1 2.6872 -3.9236 0.4765 15 6 2.4951 -3.7608 -1.6680 16 6 1.3968 -3.4500 -2.6876 17 6 1.9951 -3.4634 -4.0978 18 7 2.6711 -4.7511 -4.3117 19 6 2.3693 -5.5156 -5.3799 20 8 1.6133 -5.0957 -6.2333 21 6 2.9600 -6.8690 -5.5135 22 6 2.8706 -7.8065 -6.6486 23 7 3.5684 -8.8295 -6.2323 24 8 3.9861 -8.6101 -5.1199 25 7 3.6907 -7.5374 -4.6467 26 6 3.6814 -5.1892 -3.3390 27 6 3.0636 -5.1559 -1.9376 28 1 -0.4850 0.8400 0.0004 29 1 -0.4463 -1.8475 1.0234 30 1 -0.6845 -2.3938 -0.6639 31 1 -0.0245 -4.0881 1.8085 32 1 -1.2809 -4.3780 0.5586 33 1 0.3512 -4.9852 -1.1046 34 1 1.1219 -5.6492 0.3734 35 1 3.2910 -3.0213 -1.7550 36 1 0.6122 -4.2034 -2.6181 37 1 0.9759 -2.4662 -2.4803 38 1 1.2000 -3.3406 -4.8332 39 1 2.7157 -2.6516 -4.1966 40 1 2.3578 -7.6782 -7.5904 41 1 4.5395 -4.5181 -3.3761 42 1 4.0011 -6.2045 -3.5733 43 1 3.8294 -5.3859 -1.1968 44 1 2.2634 -5.8933 -1.8746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004573747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:35 Heat of formation + Delta-G solvation = 120.082443 kcal Electronic energy + Delta-G solvation = -28106.867486 eV Core-core repulsion = 24258.877198 eV Total energy + Delta-G solvation = -3847.990288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.20470 -40.34946 -38.52462 -36.54426 -35.11780 -34.79633 -33.04768 -32.16853 -30.95317 -29.38950 -27.93969 -26.33361 -24.81137 -24.42426 -23.53376 -23.03177 -21.47747 -20.41321 -19.84523 -19.32374 -18.49824 -18.37358 -17.46844 -16.69289 -16.15281 -15.33002 -15.22829 -15.03961 -14.70690 -14.23339 -13.92964 -13.86857 -13.57211 -13.27851 -13.06227 -12.78630 -12.43451 -12.14479 -11.87916 -11.75423 -11.59330 -11.50943 -11.25527 -11.04929 -10.97203 -10.91000 -10.81052 -10.58118 -10.38421 -10.15165 -10.05369 -9.84451 -9.70746 -9.56781 -9.46436 -8.73679 -8.57806 -6.78626 -5.74060 -3.08998 0.45756 1.02956 2.37656 2.72857 3.13733 3.18184 3.37357 3.43452 3.44832 3.61880 4.27609 4.47292 4.47514 5.00406 5.03302 5.06623 5.18706 5.34096 5.40686 5.45481 5.58465 5.67485 5.71629 5.78267 5.83129 5.89868 5.97130 6.11531 6.13345 6.24006 6.32453 6.41007 6.48685 6.56738 6.61326 6.75592 6.93579 7.00603 7.11184 7.16972 7.56769 7.61941 7.74079 7.81556 8.13159 8.28986 9.20405 9.81966 10.50830 11.37053 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.003474 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.014074 B = 8057.650586 C = 8576.476244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.128 4.128 13 C 0.167 3.833 14 H 0.032 0.968 15 C -0.094 4.094 16 C -0.118 4.118 17 C 0.112 3.888 18 N -0.583 5.583 19 C 0.598 3.402 20 O -0.521 6.521 21 C -0.030 4.030 22 C 0.035 3.965 23 N -0.353 5.353 24 O 0.333 5.667 25 N -0.317 5.317 26 C 0.080 3.920 27 C -0.125 4.125 28 H 0.252 0.748 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.227 0.773 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -14.880 -8.690 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.166 4.166 13 C 0.060 3.940 14 H 0.049 0.951 15 C -0.115 4.115 16 C -0.156 4.156 17 C -0.008 4.008 18 N -0.315 5.315 19 C 0.381 3.619 20 O -0.397 6.397 21 C -0.195 4.195 22 C -0.151 4.151 23 N -0.076 5.076 24 O 0.110 5.890 25 N -0.041 5.041 26 C -0.042 4.042 27 C -0.164 4.164 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.243 0.757 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.091 0.909 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.893 -15.145 -8.490 18.335 hybrid contribution -0.014 1.544 -0.510 1.626 sum 5.878 -13.601 -9.000 17.336 Atomic orbital electron populations 1.69933 1.04871 1.25007 1.56645 1.24823 0.95607 0.97564 1.02147 0.86211 0.78701 0.83840 0.77559 1.21627 1.21786 1.20771 1.18934 0.90254 0.82333 1.43686 0.90906 1.44504 1.04822 1.00709 1.81668 1.21446 0.84918 0.90210 0.98669 1.23016 0.97288 0.99829 0.98776 1.22660 0.97144 0.97152 0.99624 1.20911 0.93759 0.86949 0.92412 0.95067 1.21614 0.97827 0.94561 0.97510 1.21904 0.97877 1.04396 0.91378 1.21945 0.97303 0.82292 0.99306 1.48106 1.39576 1.20785 1.23022 1.16622 0.81275 0.81270 0.82709 1.90826 1.36475 1.71812 1.40540 1.26393 1.01452 0.99823 0.91852 1.27727 0.98629 0.86900 1.01841 1.75063 1.12099 1.23362 0.97120 1.85109 1.54069 1.27757 1.22017 1.75275 1.12290 0.94979 1.21510 1.22509 0.90169 1.02365 0.89178 1.21952 1.00648 0.99071 0.94690 0.93769 0.90920 0.95980 0.92556 0.92699 0.91680 0.92784 0.91198 0.92313 0.88112 0.89158 0.90836 0.75673 0.91086 0.87147 0.90851 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.81 10.48 55.49 0.58 -25.23 16 2 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 3 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.80 9.85 -15.06 -0.15 -5.95 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.59 -13.89 2.29 -162.57 -0.37 -14.26 16 10 C 0.17 3.99 5.45 -2.53 -0.01 3.97 16 11 C -0.15 -2.77 7.09 -24.58 -0.17 -2.95 16 12 C -0.13 -2.14 5.22 -24.89 -0.13 -2.27 16 13 C 0.17 3.16 2.95 -66.95 -0.20 2.96 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.09 -1.55 1.92 -90.58 -0.17 -1.72 16 16 C -0.12 -1.98 4.93 -26.61 -0.13 -2.12 16 17 C 0.11 1.68 6.42 -3.67 -0.02 1.65 16 18 N -0.58 -7.92 2.97 -173.66 -0.52 -8.44 16 19 C 0.60 8.17 7.71 -12.13 -0.09 8.08 16 20 O -0.52 -8.34 16.49 5.37 0.09 -8.25 16 21 C -0.03 -0.33 7.23 -80.07 -0.58 -0.91 16 22 C 0.03 0.31 12.63 -14.29 -0.18 0.13 16 23 N -0.35 -3.35 12.22 30.71 0.38 -2.97 16 24 O 0.33 3.23 11.65 27.27 0.32 3.55 16 25 N -0.32 -3.35 8.93 33.49 0.30 -3.06 16 26 C 0.08 0.97 6.34 -3.71 -0.02 0.95 16 27 C -0.12 -1.63 5.11 -26.61 -0.14 -1.77 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.07 1.91 6.76 -51.93 -0.35 1.56 16 30 H 0.02 0.55 8.10 -51.92 -0.42 0.13 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.07 5.49 -51.93 -0.29 0.78 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 36 H 0.06 0.99 6.11 -51.93 -0.32 0.68 16 37 H 0.10 2.09 7.54 -51.93 -0.39 1.70 16 38 H 0.09 1.39 7.05 -51.93 -0.37 1.03 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.23 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.11 1.24 3.93 -62.06 -0.24 0.99 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.86 7.14 -51.93 -0.37 0.49 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -28.88 345.56 -7.23 -36.12 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.09 Total: 1.13 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.10 Total: -0.17 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.37 Total: -53.96 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.41 Total: -4.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.88 -7.23 -36.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004573747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.200 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds