Wall clock time and date at job start Tue Mar 31 2020 12:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99967 * 2 1 4 4 H 1.48493 * 109.47330 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.47340 * 30.00605 * 3 2 1 6 6 H 1.48505 * 109.47195 * 150.00257 * 3 2 1 7 7 C 1.38814 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65033 * 347.72911 * 9 7 2 11 11 C 1.54913 * 104.83327 * 204.08848 * 10 9 7 12 12 C 1.55155 * 101.58007 * 322.98466 * 11 10 9 13 13 C 1.47027 * 125.64725 * 167.67795 * 9 7 2 14 14 H 1.08997 * 109.88066 * 59.41063 * 13 9 7 15 15 C 1.52995 * 109.88473 * 298.39951 * 13 9 7 16 16 C 1.53041 * 109.46235 * 301.62062 * 15 13 9 17 17 C 1.53190 * 109.34259 * 178.59560 * 16 15 13 18 18 N 1.46998 * 108.73418 * 54.62447 * 17 16 15 19 19 C 1.34783 * 120.61308 * 126.38763 * 18 17 16 20 20 O 1.21497 * 119.99845 * 5.97342 * 19 18 17 21 21 C 1.48278 * 119.99742 * 185.97197 * 19 18 17 22 22 C 1.47487 * 128.71077 * 186.53932 * 21 19 18 23 23 N 1.30639 * 102.71917 * 179.85340 * 22 21 19 24 24 O 1.20837 * 109.61819 * 0.41941 * 23 22 21 25 25 N 1.20904 * 115.90808 * 359.70492 * 24 23 22 26 26 C 1.46925 * 118.75776 * 306.40728 * 18 17 16 27 27 C 1.53047 * 109.46077 * 181.55616 * 15 13 9 28 28 H 0.96998 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.37093 * 322.92500 * 10 9 7 30 30 H 1.09008 * 110.37130 * 85.13921 * 10 9 7 31 31 H 1.09000 * 111.00429 * 81.06364 * 11 10 9 32 32 H 1.09005 * 111.00126 * 204.91589 * 11 10 9 33 33 H 1.08997 * 110.72629 * 277.13732 * 12 11 10 34 34 H 1.09001 * 110.71461 * 153.86322 * 12 11 10 35 35 H 1.08994 * 109.45029 * 61.58820 * 15 13 9 36 36 H 1.08995 * 109.49895 * 298.56960 * 16 15 13 37 37 H 1.09000 * 109.49544 * 58.62829 * 16 15 13 38 38 H 1.09001 * 109.58780 * 174.44100 * 17 16 15 39 39 H 1.08995 * 109.58548 * 294.86640 * 17 16 15 40 40 H 1.08007 * 128.64156 * 359.97438 * 22 21 19 41 41 H 1.09000 * 109.58806 * 293.82826 * 26 18 17 42 42 H 1.08996 * 109.70480 * 173.46383 * 26 18 17 43 43 H 1.09003 * 109.49081 * 301.33815 * 27 15 13 44 44 H 1.08994 * 109.49667 * 61.40205 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1177 -2.5469 0.2546 11 6 -0.2744 -4.0061 0.7507 12 6 0.7690 -4.7471 -0.1265 13 6 1.9079 -3.7137 -0.2560 14 1 2.6872 -3.9236 0.4765 15 6 2.4951 -3.7608 -1.6680 16 6 1.3968 -3.4500 -2.6876 17 6 1.9951 -3.4634 -4.0978 18 7 2.6711 -4.7511 -4.3117 19 6 2.3693 -5.5156 -5.3799 20 8 1.6133 -5.0957 -6.2333 21 6 2.9600 -6.8690 -5.5135 22 6 2.8706 -7.8065 -6.6486 23 7 3.5684 -8.8295 -6.2323 24 8 3.9861 -8.6101 -5.1199 25 7 3.6907 -7.5374 -4.6467 26 6 3.6814 -5.1892 -3.3390 27 6 3.0636 -5.1559 -1.9376 28 1 -0.4850 0.8400 0.0004 29 1 -0.4463 -1.8475 1.0234 30 1 -0.6845 -2.3938 -0.6639 31 1 -0.0245 -4.0881 1.8085 32 1 -1.2809 -4.3780 0.5586 33 1 0.3512 -4.9852 -1.1046 34 1 1.1219 -5.6492 0.3734 35 1 3.2910 -3.0213 -1.7550 36 1 0.6122 -4.2034 -2.6181 37 1 0.9759 -2.4662 -2.4803 38 1 1.2000 -3.3406 -4.8332 39 1 2.7157 -2.6516 -4.1966 40 1 2.3578 -7.6782 -7.5904 41 1 4.5395 -4.5181 -3.3761 42 1 4.0011 -6.2045 -3.5733 43 1 3.8294 -5.3859 -1.1968 44 1 2.2634 -5.8933 -1.8746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004573747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:34 Heat of formation + Delta-G solvation = 104.136529 kcal Electronic energy + Delta-G solvation = -28107.558953 eV Core-core repulsion = 24258.877198 eV Total energy + Delta-G solvation = -3848.681754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.98143 -41.49992 -39.94131 -37.88157 -35.97591 -35.58489 -34.70486 -33.70581 -32.13008 -31.20176 -29.33665 -27.39093 -26.48861 -25.57081 -24.65734 -24.20780 -22.72979 -21.88084 -21.27418 -20.10673 -19.81724 -19.24156 -18.68093 -18.36917 -17.32434 -16.85670 -16.47807 -16.32438 -15.89630 -15.71851 -15.34212 -15.24341 -14.64899 -14.56624 -14.22153 -13.85852 -13.78500 -13.66625 -13.50924 -13.13025 -12.83129 -12.80448 -12.72543 -12.54836 -12.41809 -12.15408 -12.00446 -11.86120 -11.81636 -11.77740 -11.61830 -11.47751 -11.22154 -11.04803 -10.92949 -10.61155 -9.87234 -8.72391 -7.79034 -5.13610 -0.40711 0.31352 1.37875 1.47163 1.47512 1.55575 1.71851 2.27183 2.44099 2.52950 2.79699 3.36478 3.38917 3.67427 3.70733 3.85787 3.90518 4.06496 4.16796 4.22062 4.26549 4.33420 4.36965 4.44111 4.55636 4.60762 4.77136 4.82174 4.87136 4.90292 5.01499 5.09407 5.12058 5.17600 5.20858 5.27213 5.50449 5.55627 5.63190 5.68329 5.72739 5.84587 6.08762 6.31598 6.67186 7.17763 7.36031 7.87651 8.54868 9.31286 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.003474 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.014074 B = 8057.650586 C = 8576.476244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.159 3.841 14 H 0.033 0.967 15 C -0.085 4.085 16 C -0.105 4.105 17 C 0.121 3.879 18 N -0.585 5.585 19 C 0.600 3.400 20 O -0.549 6.549 21 C -0.047 4.047 22 C 0.053 3.947 23 N -0.358 5.358 24 O 0.343 5.657 25 N -0.315 5.315 26 C 0.083 3.917 27 C -0.115 4.115 28 H 0.243 0.757 29 H 0.032 0.968 30 H -0.007 1.007 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -17.599 -9.270 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.794 3.206 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.178 4.178 12 C -0.153 4.153 13 C 0.052 3.948 14 H 0.051 0.949 15 C -0.106 4.106 16 C -0.143 4.143 17 C 0.000 4.000 18 N -0.317 5.317 19 C 0.385 3.615 20 O -0.426 6.426 21 C -0.212 4.212 22 C -0.132 4.132 23 N -0.082 5.082 24 O 0.118 5.882 25 N -0.037 5.037 26 C -0.039 4.039 27 C -0.153 4.153 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.011 0.989 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.143 0.857 43 H 0.111 0.889 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.599 -17.891 -9.051 21.441 hybrid contribution -0.508 2.319 -0.335 2.398 sum 7.091 -15.572 -9.386 19.515 Atomic orbital electron populations 1.70145 1.06154 1.24813 1.58600 1.25515 0.96316 1.00476 1.03198 0.85278 0.77820 0.80222 0.77257 1.21637 1.22684 1.19562 1.19228 0.90582 0.83526 1.41697 0.90606 1.44713 1.05002 1.01810 1.81784 1.21189 0.84711 0.92634 0.96184 1.22892 0.99249 0.96406 0.99230 1.22626 0.95453 0.97341 0.99859 1.21161 0.94609 0.85294 0.93693 0.94895 1.21446 0.96886 0.96583 0.95681 1.21673 0.98057 1.01659 0.92914 1.21673 0.97217 0.83429 0.97710 1.48100 1.39742 1.20232 1.23606 1.16817 0.80692 0.81928 0.82054 1.90812 1.37677 1.72664 1.41443 1.26051 1.02695 0.99150 0.93257 1.28167 0.97516 0.85583 1.01980 1.75106 1.12570 1.23543 0.96978 1.85111 1.53742 1.27182 1.22173 1.75179 1.11810 0.95171 1.21507 1.22606 0.89791 1.03421 0.88046 1.21866 1.01259 0.96297 0.95888 0.94749 0.94934 0.98945 0.92023 0.90647 0.91175 0.89418 0.92981 0.92319 0.92733 0.89904 0.90827 0.72949 0.90297 0.85665 0.88871 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.98 10.48 21.65 0.23 -55.75 16 2 C -0.06 -3.43 5.47 84.86 0.46 -2.97 16 3 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.22 -11.72 9.85 84.03 0.83 -10.90 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.61 -29.09 2.29 -668.24 -1.53 -30.62 16 10 C 0.18 8.53 5.45 86.86 0.47 9.00 16 11 C -0.14 -4.98 7.09 31.99 0.23 -4.75 16 12 C -0.12 -3.57 5.22 31.78 0.17 -3.40 16 13 C 0.16 5.81 2.95 45.34 0.13 5.95 16 14 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 15 C -0.09 -2.72 1.92 -10.77 -0.02 -2.74 16 16 C -0.10 -3.58 4.93 30.67 0.15 -3.43 16 17 C 0.12 3.63 6.42 86.35 0.55 4.18 16 18 N -0.59 -15.03 2.97 -821.65 -2.44 -17.47 16 19 C 0.60 15.41 7.71 86.91 0.67 16.08 16 20 O -0.55 -17.01 16.49 -3.71 -0.06 -17.07 16 21 C -0.05 -0.94 7.23 44.29 0.32 -0.62 16 22 C 0.05 0.77 12.63 87.31 1.10 1.88 16 23 N -0.36 -5.70 12.22 -61.46 -0.75 -6.45 16 24 O 0.34 5.62 11.65 140.85 1.64 7.26 16 25 N -0.32 -5.73 8.93 -52.07 -0.47 -6.19 16 26 C 0.08 1.79 6.34 86.36 0.55 2.34 16 27 C -0.11 -2.66 5.11 30.67 0.16 -2.50 16 28 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.03 1.79 6.76 -2.39 -0.02 1.78 16 30 H -0.01 -0.39 8.10 -2.38 -0.02 -0.41 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.07 2.13 5.49 -2.39 -0.01 2.11 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 36 H 0.06 1.97 6.11 -2.39 -0.01 1.96 16 37 H 0.05 2.39 7.54 -2.39 -0.02 2.37 16 38 H 0.08 2.60 7.05 -2.39 -0.02 2.59 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.25 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.13 2.40 3.93 -21.24 -0.08 2.31 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 1.60 7.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.14 345.56 5.37 -59.77 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.95 Total: 11.21 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.77 Total: 8.13 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.97 Total: -116.49 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 1.58 Total: -9.81 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.14 5.37 -59.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004573747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.907 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds