Wall clock time and date at job start Tue Mar 31 2020 13:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32218 * 120.51359 * 2 1 4 4 C 1.31914 * 121.14121 * 180.31447 * 3 2 1 5 5 N 1.31753 * 122.19341 * 359.69728 * 4 3 2 6 6 C 1.32740 * 120.87671 * 0.02562 * 5 4 3 7 7 O 1.35275 * 120.61888 * 180.02562 * 6 5 4 8 8 C 1.39772 * 120.50760 * 179.73979 * 2 1 3 9 9 C 1.47537 * 120.97954 * 359.97438 * 8 2 1 10 10 O 1.21593 * 119.99856 * 269.72295 * 9 8 2 11 11 N 1.34775 * 120.00235 * 89.71955 * 9 8 2 12 12 C 1.46500 * 120.00014 * 0.02562 * 11 9 8 13 13 C 1.46507 * 120.00359 * 180.02562 * 11 9 8 14 14 C 1.53036 * 109.45897 * 240.00340 * 13 11 9 15 15 C 1.53191 * 109.31166 * 178.61271 * 14 13 11 16 16 N 1.46926 * 108.89452 * 54.56289 * 15 14 13 17 17 C 1.36934 * 120.63630 * 126.46229 * 16 15 14 18 18 H 1.08000 * 119.99464 * 331.92669 * 17 16 15 19 19 C 1.38810 * 120.00385 * 151.92945 * 17 16 15 20 20 N 1.31619 * 119.99689 * 343.17004 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 163.17171 * 19 17 16 22 22 H 1.48503 * 109.47611 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.47355 * 239.99904 * 21 19 17 25 25 C 1.46973 * 118.71425 * 306.64410 * 16 15 14 26 26 C 1.53043 * 109.45897 * 119.93020 * 13 11 9 27 27 H 1.08993 * 109.46863 * 270.26287 * 1 2 3 28 28 H 1.09000 * 109.46909 * 30.25784 * 1 2 3 29 29 H 1.08993 * 109.47104 * 150.26080 * 1 2 3 30 30 H 1.07991 * 118.89769 * 179.73193 * 4 3 2 31 31 H 0.96707 * 114.00091 * 269.97253 * 7 6 5 32 32 H 1.08994 * 109.47201 * 270.00443 * 12 11 9 33 33 H 1.09000 * 109.46830 * 30.00191 * 12 11 9 34 34 H 1.08996 * 109.47301 * 149.99881 * 12 11 9 35 35 H 1.08996 * 109.45453 * 359.97332 * 13 11 9 36 36 H 1.09001 * 109.50071 * 58.66060 * 14 13 11 37 37 H 1.09005 * 109.49477 * 298.56396 * 14 13 11 38 38 H 1.09000 * 109.58954 * 174.41929 * 15 14 13 39 39 H 1.08996 * 109.58649 * 294.70243 * 15 14 13 40 40 H 0.97000 * 119.99637 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.46458 * 293.56938 * 25 16 15 42 42 H 1.08992 * 109.71060 * 173.28601 * 25 16 15 43 43 H 1.08995 * 109.49931 * 301.34255 * 26 13 11 44 44 H 1.08997 * 109.49588 * 61.40711 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1391 0.0000 4 6 3.4974 1.1535 -0.0062 5 7 4.2115 0.0463 -0.0068 6 6 3.6234 -1.1436 -0.0016 7 8 4.3617 -2.2771 -0.0017 8 6 2.2166 -1.2042 0.0055 9 6 1.5123 -2.5006 0.0119 10 8 1.2270 -3.0322 1.0676 11 7 1.1851 -3.0956 -1.1523 12 6 1.5293 -2.4554 -2.4242 13 6 0.4853 -4.3827 -1.1459 14 6 1.3364 -5.4294 -1.8685 15 6 0.6174 -6.7815 -1.8296 16 7 -0.7344 -6.6177 -2.3815 17 6 -1.1740 -7.4197 -3.4006 18 1 -0.4668 -7.8406 -4.0999 19 6 -2.5286 -7.6917 -3.5348 20 7 -3.3470 -7.4710 -2.5280 21 14 -3.1898 -8.3708 -5.1445 22 1 -2.0736 -8.5274 -6.1115 23 1 -3.8236 -9.6916 -4.9013 24 1 -4.1979 -7.4330 -5.7006 25 6 -1.6040 -5.5736 -1.8213 26 6 -0.8601 -4.2350 -1.8602 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5097 30 1 4.0089 2.1046 -0.0104 31 1 4.5726 -2.6091 -0.8851 32 1 0.7120 -1.8057 -2.7368 33 1 2.4363 -1.8638 -2.2995 34 1 1.6959 -3.2203 -3.1826 35 1 0.3169 -4.6993 -0.1166 36 1 2.3033 -5.5171 -1.3731 37 1 1.4842 -5.1256 -2.9048 38 1 1.1703 -7.5067 -2.4267 39 1 0.5516 -7.1309 -0.7993 40 1 -4.2935 -7.6615 -2.6217 41 1 -1.8532 -5.8233 -0.7900 42 1 -2.5179 -5.5011 -2.4107 43 1 -1.4564 -3.4727 -1.3590 44 1 -0.6916 -3.9420 -2.8964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005861011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:08 Heat of formation + Delta-G solvation = 3.658705 kcal Electronic energy + Delta-G solvation = -27923.204564 eV Core-core repulsion = 24070.165764 eV Total energy + Delta-G solvation = -3853.038800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78464 -39.79076 -38.11618 -37.48472 -35.24493 -34.52971 -32.78598 -31.99349 -30.31757 -29.69301 -28.94492 -27.09104 -25.88288 -24.68486 -23.19298 -22.29850 -22.21527 -19.99943 -19.28018 -18.99220 -18.42393 -17.43042 -16.92930 -16.62900 -16.25126 -15.46258 -14.99995 -14.80584 -14.58244 -14.24177 -13.78191 -13.72314 -13.59877 -13.20425 -13.12944 -13.03398 -12.92953 -12.65272 -12.57261 -12.41606 -12.35547 -11.58195 -11.55929 -11.19530 -10.88135 -10.78480 -10.72167 -10.46396 -10.27064 -10.18113 -10.05105 -9.81444 -9.78694 -9.64823 -9.59018 -8.64318 -8.44583 -6.74496 -5.84468 -3.27410 0.24454 0.51364 2.35310 2.82013 2.94274 3.20994 3.33174 3.41426 3.43158 3.58961 3.86656 4.19189 4.44544 4.57588 4.73175 4.90325 4.93850 5.19247 5.22372 5.23383 5.31983 5.35412 5.42439 5.52099 5.53745 5.56515 5.75847 5.85603 5.97644 6.12009 6.21369 6.38211 6.40979 6.48642 6.52290 6.68993 6.76196 6.87921 6.92621 7.26035 7.32620 7.58936 7.59807 7.74636 8.03317 8.39010 9.15179 9.78210 10.34936 11.24388 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.003138 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.090551 B = 8921.536771 C = 9271.564438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.226 3.774 3 N -0.524 5.524 4 C 0.331 3.669 5 N -0.542 5.542 6 C 0.395 3.605 7 O -0.465 6.465 8 C -0.240 4.240 9 C 0.573 3.427 10 O -0.520 6.520 11 N -0.598 5.598 12 C 0.078 3.922 13 C 0.145 3.855 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.174 3.826 26 C -0.145 4.145 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.206 0.794 31 H 0.410 0.590 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.659 16.645 0.827 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 N -0.241 5.241 4 C 0.044 3.956 5 N -0.267 5.267 6 C 0.207 3.793 7 O -0.273 6.273 8 C -0.249 4.249 9 C 0.357 3.643 10 O -0.395 6.395 11 N -0.331 5.331 12 C -0.065 4.065 13 C 0.043 3.957 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.047 3.953 26 C -0.185 4.185 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.222 0.778 31 H 0.271 0.729 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.774 17.107 1.972 20.861 hybrid contribution -0.504 -1.092 -1.276 1.753 sum 11.271 16.015 0.696 19.596 Atomic orbital electron populations 1.20941 0.86793 1.04750 1.04757 1.21829 0.97825 0.85899 0.86404 1.68306 1.10171 1.29358 1.16230 1.24965 0.86275 0.96088 0.88288 1.68049 1.42623 0.98653 1.17354 1.19359 0.85516 0.85953 0.88492 1.84707 1.72516 1.35892 1.34214 1.21809 0.95147 0.97135 1.10815 1.17611 0.78941 0.83338 0.84385 1.90837 1.53773 1.64283 1.30616 1.48174 1.57370 1.22448 1.05067 1.21722 0.99745 0.98519 0.86514 1.21305 0.92005 0.80348 1.02013 1.22384 0.97988 0.97612 0.99850 1.20855 0.87397 0.92791 0.96893 1.44094 1.10694 1.36393 1.40314 1.19205 0.91521 1.24602 1.03023 0.91599 1.25062 0.97475 0.99612 0.97419 1.70036 1.03658 1.52014 1.28822 0.86235 0.78797 0.78294 0.83498 1.20263 1.21692 1.21557 1.20762 0.93790 0.83135 0.97590 1.22564 0.95033 1.01422 0.99451 0.88605 0.88904 0.89679 0.77762 0.72887 0.92213 0.92882 0.89749 0.88425 0.92769 0.92004 0.92387 0.96122 0.93598 0.96076 0.89092 0.93000 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.85 36.01 0.35 -0.74 16 2 C 0.23 2.54 6.86 -81.85 -0.56 1.98 16 3 N -0.52 -5.48 10.36 -10.52 -0.11 -5.59 16 4 C 0.33 3.05 12.27 -92.09 -1.13 1.92 16 5 N -0.54 -6.01 10.45 -14.32 -0.15 -6.16 16 6 C 0.39 4.71 7.44 -16.19 -0.12 4.59 16 7 O -0.47 -5.18 13.10 -17.52 -0.23 -5.41 16 8 C -0.24 -3.00 3.95 -104.56 -0.41 -3.42 16 9 C 0.57 8.48 5.37 -12.47 -0.07 8.41 16 10 O -0.52 -9.88 16.43 5.28 0.09 -9.79 16 11 N -0.60 -8.03 2.76 -175.12 -0.48 -8.51 16 12 C 0.08 0.79 9.35 59.85 0.56 1.35 16 13 C 0.14 2.37 2.48 -67.89 -0.17 2.20 16 14 C -0.14 -2.23 5.31 -26.61 -0.14 -2.37 16 15 C 0.15 2.96 6.51 -3.71 -0.02 2.94 16 16 N -0.59 -14.17 3.00 -172.29 -0.52 -14.69 16 17 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 18 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 21 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.17 3.96 5.30 -3.69 -0.02 3.94 16 26 C -0.14 -2.56 5.34 -26.61 -0.14 -2.70 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.87 7.18 -51.93 -0.37 0.50 16 30 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.41 2.51 9.06 45.56 0.41 2.93 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.08 0.84 6.45 -51.93 -0.34 0.50 16 35 H 0.10 1.86 6.90 -51.93 -0.36 1.51 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 38 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -33.38 358.58 -7.91 -41.29 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.40 Total: 1.10 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -2.10 Total: 11.24 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.64 Total: -59.83 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.14 Total: -15.20 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.38 -7.91 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005861011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.949 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds