Wall clock time and date at job start Tue Mar 31 2020 13:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32218 * 120.51359 * 2 1 4 4 C 1.31914 * 121.14121 * 180.31447 * 3 2 1 5 5 N 1.31753 * 122.19341 * 359.69728 * 4 3 2 6 6 C 1.32740 * 120.87671 * 0.02562 * 5 4 3 7 7 O 1.35275 * 120.61888 * 180.02562 * 6 5 4 8 8 C 1.39772 * 120.50760 * 179.73979 * 2 1 3 9 9 C 1.47537 * 120.97954 * 359.97438 * 8 2 1 10 10 O 1.21593 * 119.99856 * 269.72295 * 9 8 2 11 11 N 1.34775 * 120.00235 * 89.71955 * 9 8 2 12 12 C 1.46500 * 120.00014 * 0.02562 * 11 9 8 13 13 C 1.46507 * 120.00359 * 180.02562 * 11 9 8 14 14 C 1.53036 * 109.45897 * 240.00340 * 13 11 9 15 15 C 1.53191 * 109.31166 * 178.61271 * 14 13 11 16 16 N 1.46926 * 108.89452 * 54.56289 * 15 14 13 17 17 C 1.36934 * 120.63630 * 126.46229 * 16 15 14 18 18 H 1.08000 * 119.99464 * 331.92669 * 17 16 15 19 19 C 1.38810 * 120.00385 * 151.92945 * 17 16 15 20 20 N 1.31619 * 119.99689 * 343.17004 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 163.17171 * 19 17 16 22 22 H 1.48503 * 109.47611 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.47355 * 239.99904 * 21 19 17 25 25 C 1.46973 * 118.71425 * 306.64410 * 16 15 14 26 26 C 1.53043 * 109.45897 * 119.93020 * 13 11 9 27 27 H 1.08993 * 109.46863 * 270.26287 * 1 2 3 28 28 H 1.09000 * 109.46909 * 30.25784 * 1 2 3 29 29 H 1.08993 * 109.47104 * 150.26080 * 1 2 3 30 30 H 1.07991 * 118.89769 * 179.73193 * 4 3 2 31 31 H 0.96707 * 114.00091 * 269.97253 * 7 6 5 32 32 H 1.08994 * 109.47201 * 270.00443 * 12 11 9 33 33 H 1.09000 * 109.46830 * 30.00191 * 12 11 9 34 34 H 1.08996 * 109.47301 * 149.99881 * 12 11 9 35 35 H 1.08996 * 109.45453 * 359.97332 * 13 11 9 36 36 H 1.09001 * 109.50071 * 58.66060 * 14 13 11 37 37 H 1.09005 * 109.49477 * 298.56396 * 14 13 11 38 38 H 1.09000 * 109.58954 * 174.41929 * 15 14 13 39 39 H 1.08996 * 109.58649 * 294.70243 * 15 14 13 40 40 H 0.97000 * 119.99637 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.46458 * 293.56938 * 25 16 15 42 42 H 1.08992 * 109.71060 * 173.28601 * 25 16 15 43 43 H 1.08995 * 109.49931 * 301.34255 * 26 13 11 44 44 H 1.08997 * 109.49588 * 61.40711 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1391 0.0000 4 6 3.4974 1.1535 -0.0062 5 7 4.2115 0.0463 -0.0068 6 6 3.6234 -1.1436 -0.0016 7 8 4.3617 -2.2771 -0.0017 8 6 2.2166 -1.2042 0.0055 9 6 1.5123 -2.5006 0.0119 10 8 1.2270 -3.0322 1.0676 11 7 1.1851 -3.0956 -1.1523 12 6 1.5293 -2.4554 -2.4242 13 6 0.4853 -4.3827 -1.1459 14 6 1.3364 -5.4294 -1.8685 15 6 0.6174 -6.7815 -1.8296 16 7 -0.7344 -6.6177 -2.3815 17 6 -1.1740 -7.4197 -3.4006 18 1 -0.4668 -7.8406 -4.0999 19 6 -2.5286 -7.6917 -3.5348 20 7 -3.3470 -7.4710 -2.5280 21 14 -3.1898 -8.3708 -5.1445 22 1 -2.0736 -8.5274 -6.1115 23 1 -3.8236 -9.6916 -4.9013 24 1 -4.1979 -7.4330 -5.7006 25 6 -1.6040 -5.5736 -1.8213 26 6 -0.8601 -4.2350 -1.8602 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5097 30 1 4.0089 2.1046 -0.0104 31 1 4.5726 -2.6091 -0.8851 32 1 0.7120 -1.8057 -2.7368 33 1 2.4363 -1.8638 -2.2995 34 1 1.6959 -3.2203 -3.1826 35 1 0.3169 -4.6993 -0.1166 36 1 2.3033 -5.5171 -1.3731 37 1 1.4842 -5.1256 -2.9048 38 1 1.1703 -7.5067 -2.4267 39 1 0.5516 -7.1309 -0.7993 40 1 -4.2935 -7.6615 -2.6217 41 1 -1.8532 -5.8233 -0.7900 42 1 -2.5179 -5.5011 -2.4107 43 1 -1.4564 -3.4727 -1.3590 44 1 -0.6916 -3.9420 -2.8964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005861011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:07 Heat of formation + Delta-G solvation = -21.320262 kcal Electronic energy + Delta-G solvation = -27924.287733 eV Core-core repulsion = 24070.165764 eV Total energy + Delta-G solvation = -3854.121969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65126 -40.95058 -39.04240 -38.88336 -36.65554 -35.38966 -34.33118 -33.09971 -31.88722 -31.32956 -29.80089 -28.08859 -27.24516 -26.02243 -24.03973 -23.89008 -23.71957 -21.34050 -20.40807 -20.07920 -19.26555 -18.81076 -18.36013 -17.74553 -17.29333 -16.82530 -16.29573 -15.90723 -15.77581 -15.38499 -15.36202 -15.05186 -14.79227 -14.49142 -14.25211 -14.17665 -14.03969 -13.88520 -13.74183 -13.33375 -13.19274 -13.15925 -13.02346 -12.64018 -12.54109 -12.44419 -12.10732 -11.95436 -11.88935 -11.51016 -11.49456 -11.37766 -11.04473 -10.66306 -10.56896 -10.52297 -9.74330 -8.70874 -7.87234 -5.33238 -0.56698 -0.30359 1.24320 1.48058 1.50460 1.60636 1.75842 2.13395 2.40896 2.52328 2.86161 3.09340 3.22987 3.29297 3.65476 3.74687 3.85118 4.02381 4.03827 4.11652 4.18108 4.31533 4.45651 4.46559 4.50201 4.59974 4.65837 4.67241 4.84028 4.85184 4.88443 5.02146 5.05528 5.12537 5.14539 5.29546 5.42952 5.49427 5.62700 5.65522 5.70873 6.21265 6.29972 6.39286 6.82469 6.90301 7.14550 7.84465 8.37240 9.20085 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.003138 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.090551 B = 8921.536771 C = 9271.564438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.228 3.772 3 N -0.530 5.530 4 C 0.339 3.661 5 N -0.552 5.552 6 C 0.397 3.603 7 O -0.479 6.479 8 C -0.258 4.258 9 C 0.579 3.421 10 O -0.571 6.571 11 N -0.590 5.590 12 C 0.073 3.927 13 C 0.155 3.845 14 C -0.121 4.121 15 C 0.143 3.857 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.296 1.296 24 H -0.290 1.290 25 C 0.181 3.819 26 C -0.126 4.126 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.430 0.570 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.005 0.995 40 H 0.249 0.751 41 H -0.011 1.011 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.602 18.757 -0.855 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 N -0.246 5.246 4 C 0.053 3.947 5 N -0.278 5.278 6 C 0.209 3.791 7 O -0.291 6.291 8 C -0.267 4.267 9 C 0.365 3.635 10 O -0.450 6.450 11 N -0.320 5.320 12 C -0.068 4.068 13 C 0.052 3.948 14 C -0.161 4.161 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.224 1.224 24 H -0.216 1.216 25 C 0.055 3.945 26 C -0.166 4.166 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.261 0.739 31 H 0.294 0.706 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.007 0.993 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.771 19.244 0.241 23.665 hybrid contribution -1.038 -1.725 -0.704 2.133 sum 12.733 17.518 -0.463 21.662 Atomic orbital electron populations 1.20977 0.86046 1.05265 1.04877 1.22039 0.98455 0.85746 0.85530 1.68421 1.10763 1.28635 1.16756 1.25825 0.86022 0.97000 0.85869 1.68179 1.42719 0.98706 1.18182 1.19445 0.85297 0.86472 0.87887 1.84661 1.72367 1.35906 1.36117 1.21589 0.95414 0.96099 1.13618 1.17891 0.78159 0.83751 0.83689 1.90813 1.55904 1.65817 1.32471 1.48021 1.56404 1.21269 1.06313 1.21980 1.01265 0.98973 0.84631 1.20898 0.91795 0.82116 1.00014 1.22174 0.98005 0.94887 1.01041 1.20995 0.86061 0.95448 0.95816 1.44351 1.12008 1.36604 1.40248 1.19562 0.91788 1.24149 1.03481 0.91081 1.25828 0.97862 1.00660 1.00293 1.70201 1.03543 1.53788 1.30764 0.85206 0.78200 0.76983 0.80026 1.18766 1.22377 1.21645 1.20519 0.93518 0.85630 0.94878 1.22277 0.95372 0.98396 1.00560 0.88684 0.86868 0.90588 0.73859 0.70606 0.91077 0.90661 0.88988 0.91510 0.90709 0.90306 0.91764 0.97657 0.94143 0.99332 0.92146 0.92066 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.85 71.24 0.70 -1.31 16 2 C 0.23 4.67 6.86 42.87 0.29 4.97 16 3 N -0.53 -9.59 10.36 -187.20 -1.94 -11.52 16 4 C 0.34 5.13 12.27 180.86 2.22 7.35 16 5 N -0.55 -10.75 10.45 -312.06 -3.26 -14.01 16 6 C 0.40 8.66 7.44 85.19 0.63 9.29 16 7 O -0.48 -9.78 13.10 -85.60 -1.12 -10.90 16 8 C -0.26 -6.04 3.95 -19.82 -0.08 -6.12 16 9 C 0.58 16.70 5.37 86.70 0.47 17.17 16 10 O -0.57 -22.11 16.43 -4.01 -0.07 -22.18 16 11 N -0.59 -14.91 2.76 -826.20 -2.28 -17.19 16 12 C 0.07 1.25 9.35 127.77 1.19 2.44 16 13 C 0.15 4.99 2.48 45.02 0.11 5.10 16 14 C -0.12 -3.72 5.31 30.67 0.16 -3.56 16 15 C 0.14 5.71 6.51 86.36 0.56 6.27 16 16 N -0.61 -29.54 3.00 -699.01 -2.10 -31.63 16 17 C -0.26 -13.76 9.58 84.03 0.81 -12.95 16 18 H 0.07 3.63 7.88 -2.91 -0.02 3.60 16 19 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 20 N -0.94 -54.80 11.20 21.65 0.24 -54.56 16 21 Si 0.97 43.59 29.59 68.60 2.03 45.62 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 25 C 0.18 8.54 5.30 86.35 0.46 9.00 16 26 C -0.13 -4.44 5.34 30.67 0.16 -4.27 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.47 7.18 -2.39 -0.02 1.45 16 30 H 0.25 1.46 8.06 -2.92 -0.02 1.43 16 31 H 0.43 4.24 9.06 -74.05 -0.67 3.56 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.99 6.56 -2.39 -0.02 0.97 16 34 H 0.09 1.47 6.45 -2.39 -0.02 1.46 16 35 H 0.07 2.63 6.90 -2.39 -0.02 2.61 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 2.19 6.72 -2.38 -0.02 2.18 16 38 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 39 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 2.36 7.72 -2.39 -0.02 2.34 16 Total: -1.00 -74.49 358.58 -0.02 -74.51 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.36 Total: 10.86 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 8.11 Total: 31.01 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -9.34 Total: -128.92 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.19 Total: -33.08 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.49 -0.02 -74.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005861011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.189 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds