Wall clock time and date at job start Tue Mar 31 2020 12:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47350 * 240.00229 * 3 2 1 5 5 H 1.48503 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47596 * 120.00171 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 197.35351 * 7 2 1 9 9 N 1.36937 * 120.00340 * 17.34632 * 7 2 1 10 10 C 1.46925 * 120.63308 * 207.68272 * 9 7 2 11 11 C 1.53188 * 108.77262 * 233.62679 * 10 9 7 12 12 C 1.53040 * 109.34006 * 305.34976 * 11 10 9 13 13 C 1.53105 * 109.50421 * 61.34814 * 12 11 10 14 14 H 1.09000 * 109.48698 * 58.61813 * 13 12 11 15 15 N 1.46504 * 109.51404 * 178.68583 * 13 12 11 16 16 C 1.34778 * 119.99830 * 204.87467 * 15 13 12 17 17 O 1.21627 * 119.99989 * 359.97438 * 16 15 13 18 18 C 1.47325 * 120.00076 * 180.02562 * 16 15 13 19 19 C 1.36685 * 126.19567 * 179.97438 * 18 16 15 20 20 N 1.34500 * 106.72705 * 179.97438 * 19 18 16 21 21 C 1.36616 * 107.93944 * 0.06640 * 20 19 18 22 22 N 1.29482 * 108.90107 * 359.67702 * 21 20 19 23 23 C 1.51099 * 122.83577 * 179.84914 * 21 20 19 24 24 O 1.43436 * 107.76190 * 345.48891 * 23 21 20 25 25 C 1.43020 * 114.08361 * 49.74932 * 24 23 21 26 26 C 1.46654 * 128.71144 * 180.13429 * 20 19 18 27 27 C 1.46928 * 120.62463 * 27.69765 * 9 7 2 28 28 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58513 * 113.83916 * 10 9 7 30 30 H 1.08992 * 109.70519 * 353.48463 * 10 9 7 31 31 H 1.09002 * 109.50095 * 65.31604 * 11 10 9 32 32 H 1.09000 * 109.50144 * 185.38068 * 11 10 9 33 33 H 1.09007 * 109.46039 * 181.40376 * 12 11 10 34 34 H 1.08997 * 109.46245 * 301.35489 * 12 11 10 35 35 H 0.96997 * 120.00149 * 24.87196 * 15 13 12 36 36 H 1.07995 * 126.63380 * 359.92571 * 19 18 16 37 37 H 1.09007 * 109.80310 * 105.06041 * 23 21 20 38 38 H 1.09004 * 109.80489 * 225.92287 * 23 21 20 39 39 H 1.08995 * 109.43163 * 49.62710 * 25 24 23 40 40 H 1.09005 * 109.42544 * 169.52802 * 25 24 23 41 41 H 1.09000 * 109.73736 * 283.24614 * 26 20 19 42 42 H 1.09000 * 109.74054 * 43.95260 * 26 20 19 43 43 H 1.09002 * 109.58783 * 246.15803 * 27 9 7 44 44 H 1.09003 * 109.58686 * 6.58864 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2784 9 7 1.3722 -2.3610 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9917 12 6 0.8196 -4.6894 -1.8634 13 6 0.5013 -3.3032 -2.4301 14 1 1.3499 -2.9449 -3.0128 15 7 -0.6821 -3.3859 -3.2898 16 6 -0.8692 -2.4777 -4.2679 17 8 -0.0559 -1.5893 -4.4366 18 6 -2.0595 -2.5605 -5.1321 19 6 -2.3742 -1.7115 -6.1561 20 7 -3.5356 -2.1465 -6.6766 21 6 -3.9245 -3.2511 -5.9730 22 7 -3.0416 -3.4984 -5.0588 23 6 -5.1947 -4.0108 -6.2770 24 8 -6.0037 -3.1878 -7.1288 25 6 -5.3072 -2.6561 -8.2592 26 6 -4.3044 -1.5913 -7.7953 27 6 0.2278 -2.3340 -1.2757 28 1 -0.4850 0.8401 0.0004 29 1 1.0469 -4.0695 0.8267 30 1 2.7392 -3.5197 0.7478 31 1 2.9087 -4.2386 -1.5879 32 1 2.3148 -5.6005 -0.6073 33 1 0.9908 -5.3873 -2.6832 34 1 -0.0196 -5.0367 -1.2607 35 1 -1.3309 -4.0943 -3.1551 36 1 -1.8015 -0.8564 -6.4833 37 1 -4.9539 -4.9444 -6.7857 38 1 -5.7296 -4.2216 -5.3509 39 1 -4.7740 -3.4594 -8.7674 40 1 -6.0228 -2.2043 -8.9462 41 1 -4.8392 -0.6998 -7.4679 42 1 -3.6315 -1.3376 -8.6144 43 1 -0.6744 -2.6411 -0.7467 44 1 0.0984 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007641552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:52 Heat of formation + Delta-G solvation = 9.153217 kcal Electronic energy + Delta-G solvation = -27199.337133 eV Core-core repulsion = 23346.536593 eV Total energy + Delta-G solvation = -3852.800540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61418 -39.23787 -38.49241 -37.05650 -34.55776 -33.91990 -32.54430 -30.92683 -30.19901 -29.91188 -28.72972 -26.38914 -25.16913 -24.19387 -23.33888 -22.05909 -21.34892 -19.99064 -19.63491 -19.21658 -18.09990 -16.97721 -16.66006 -16.59630 -16.14199 -15.52511 -15.31913 -14.98006 -14.75799 -14.33021 -14.02773 -14.00455 -13.80872 -13.48561 -13.31743 -13.00569 -12.87424 -12.31187 -12.22697 -12.16524 -11.82905 -11.76049 -10.93869 -10.74470 -10.64990 -10.63774 -10.40019 -10.33999 -10.18459 -9.94680 -9.90143 -9.84297 -9.46054 -9.37336 -8.61837 -8.34243 -8.30119 -6.56194 -5.66440 -3.09627 1.59650 2.21328 2.31775 3.13318 3.47966 3.54003 3.56613 3.58581 3.86095 3.92580 3.93781 4.31070 4.42209 4.59652 4.62029 4.81461 4.87336 5.03689 5.12450 5.17604 5.44672 5.46737 5.51898 5.65251 5.73926 5.83144 5.84685 6.18796 6.22531 6.27138 6.39325 6.45432 6.52090 6.62580 6.75032 6.81403 6.87759 7.05613 7.11633 7.42244 7.63928 7.83862 7.92410 8.18469 8.57211 8.82179 9.31937 9.96338 10.51593 11.41324 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.003236 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.406567 B = 8651.517484 C = 9747.512646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.117 3.883 14 H 0.081 0.919 15 N -0.705 5.705 16 C 0.599 3.401 17 O -0.538 6.538 18 C -0.052 4.052 19 C 0.043 3.957 20 N -0.457 5.457 21 C 0.159 3.841 22 N -0.441 5.441 23 C 0.153 3.847 24 O -0.371 6.371 25 C 0.048 3.952 26 C 0.068 3.932 27 C 0.168 3.832 28 H 0.253 0.747 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.400 0.600 36 H 0.192 0.808 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.017 0.983 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 -9.267 -18.127 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.012 3.988 14 H 0.100 0.900 15 N -0.354 5.354 16 C 0.383 3.617 17 O -0.415 6.415 18 C -0.182 4.182 19 C -0.095 4.095 20 N -0.140 5.140 21 C -0.105 4.105 22 N -0.162 5.162 23 C 0.075 3.925 24 O -0.288 6.288 25 C -0.029 4.029 26 C -0.054 4.054 27 C 0.041 3.959 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.209 0.791 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.035 0.965 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.433 -9.009 -17.709 22.923 hybrid contribution 0.392 1.294 -0.588 1.474 sum -11.041 -7.716 -18.296 22.720 Atomic orbital electron populations 1.70018 1.05322 1.25555 1.53323 1.25026 0.95242 0.98442 1.00594 0.86376 0.78956 0.83427 0.78038 1.20901 1.21693 1.20966 1.19103 0.92674 0.84899 1.41916 0.91676 1.43968 1.36049 1.01575 1.49564 1.20947 0.97658 0.86914 0.92877 1.22000 0.97002 0.99264 0.98760 1.21681 0.98858 0.96070 0.98769 1.21989 0.86990 0.96875 0.92935 0.90039 1.45841 1.26122 1.30670 1.32748 1.16783 0.83289 0.81916 0.79668 1.90836 1.44754 1.34511 1.71360 1.20912 0.98552 0.97229 1.01466 1.22452 0.88371 1.01605 0.97109 1.45153 1.18315 1.23727 1.26833 1.24138 1.00428 0.91573 0.94322 1.70195 1.01978 1.24611 1.19377 1.21267 0.84511 0.90811 0.95930 1.88165 1.35887 1.67380 1.37361 1.22983 0.95431 0.95670 0.88861 1.22816 0.94909 0.99027 0.88648 1.21095 0.88643 0.98978 0.87227 0.93671 0.96436 0.92685 0.92153 0.92680 0.93090 0.92209 0.76605 0.79147 0.89642 0.85351 0.91434 0.86134 0.88398 0.87783 0.96469 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 11.19 55.49 0.62 -27.10 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 23.08 29.59 -169.99 -5.03 18.05 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.26 -7.43 9.59 -15.06 -0.14 -7.58 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -15.62 2.99 -172.32 -0.52 -16.13 16 10 C 0.14 3.09 6.51 -3.71 -0.02 3.07 16 11 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 12 C -0.12 -2.03 5.36 -26.66 -0.14 -2.18 16 13 C 0.12 2.49 2.60 -67.78 -0.18 2.31 16 14 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 15 N -0.70 -13.50 5.08 -54.76 -0.28 -13.78 16 16 C 0.60 12.13 7.78 -12.56 -0.10 12.03 16 17 O -0.54 -12.80 16.55 5.25 0.09 -12.71 16 18 C -0.05 -0.88 6.99 -82.89 -0.58 -1.46 16 19 C 0.04 0.59 11.38 -16.94 -0.19 0.40 16 20 N -0.46 -5.01 3.12 -113.31 -0.35 -5.36 16 21 C 0.16 1.92 7.79 -154.60 -1.20 0.71 16 22 N -0.44 -6.71 10.99 -6.95 -0.08 -6.78 16 23 C 0.15 1.24 7.29 36.20 0.26 1.50 16 24 O -0.37 -2.90 10.78 -35.23 -0.38 -3.28 16 25 C 0.05 0.23 6.81 37.39 0.25 0.49 16 26 C 0.07 0.41 7.28 -3.73 -0.03 0.39 16 27 C 0.17 4.33 4.89 -3.71 -0.02 4.32 16 28 H 0.25 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 1.16 7.94 -51.93 -0.41 0.74 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 40 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 2.86 6.04 -51.93 -0.31 2.54 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -37.04 358.64 -9.36 -46.39 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.50 Total: 3.71 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -2.34 Total: 11.59 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.60 Total: -69.15 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.29 Total: -15.99 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.04 -9.36 -46.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007641552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.547 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds