Wall clock time and date at job start Tue Mar 31 2020 12:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47350 * 240.00229 * 3 2 1 5 5 H 1.48503 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47596 * 120.00171 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 197.35351 * 7 2 1 9 9 N 1.36937 * 120.00340 * 17.34632 * 7 2 1 10 10 C 1.46925 * 120.63308 * 207.68272 * 9 7 2 11 11 C 1.53188 * 108.77262 * 233.62679 * 10 9 7 12 12 C 1.53040 * 109.34006 * 305.34976 * 11 10 9 13 13 C 1.53105 * 109.50421 * 61.34814 * 12 11 10 14 14 H 1.09000 * 109.48698 * 58.61813 * 13 12 11 15 15 N 1.46504 * 109.51404 * 178.68583 * 13 12 11 16 16 C 1.34778 * 119.99830 * 204.87467 * 15 13 12 17 17 O 1.21627 * 119.99989 * 359.97438 * 16 15 13 18 18 C 1.47325 * 120.00076 * 180.02562 * 16 15 13 19 19 C 1.36685 * 126.19567 * 179.97438 * 18 16 15 20 20 N 1.34500 * 106.72705 * 179.97438 * 19 18 16 21 21 C 1.36616 * 107.93944 * 0.06640 * 20 19 18 22 22 N 1.29482 * 108.90107 * 359.67702 * 21 20 19 23 23 C 1.51099 * 122.83577 * 179.84914 * 21 20 19 24 24 O 1.43436 * 107.76190 * 345.48891 * 23 21 20 25 25 C 1.43020 * 114.08361 * 49.74932 * 24 23 21 26 26 C 1.46654 * 128.71144 * 180.13429 * 20 19 18 27 27 C 1.46928 * 120.62463 * 27.69765 * 9 7 2 28 28 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58513 * 113.83916 * 10 9 7 30 30 H 1.08992 * 109.70519 * 353.48463 * 10 9 7 31 31 H 1.09002 * 109.50095 * 65.31604 * 11 10 9 32 32 H 1.09000 * 109.50144 * 185.38068 * 11 10 9 33 33 H 1.09007 * 109.46039 * 181.40376 * 12 11 10 34 34 H 1.08997 * 109.46245 * 301.35489 * 12 11 10 35 35 H 0.96997 * 120.00149 * 24.87196 * 15 13 12 36 36 H 1.07995 * 126.63380 * 359.92571 * 19 18 16 37 37 H 1.09007 * 109.80310 * 105.06041 * 23 21 20 38 38 H 1.09004 * 109.80489 * 225.92287 * 23 21 20 39 39 H 1.08995 * 109.43163 * 49.62710 * 25 24 23 40 40 H 1.09005 * 109.42544 * 169.52802 * 25 24 23 41 41 H 1.09000 * 109.73736 * 283.24614 * 26 20 19 42 42 H 1.09000 * 109.74054 * 43.95260 * 26 20 19 43 43 H 1.09002 * 109.58783 * 246.15803 * 27 9 7 44 44 H 1.09003 * 109.58686 * 6.58864 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2784 9 7 1.3722 -2.3610 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9917 12 6 0.8196 -4.6894 -1.8634 13 6 0.5013 -3.3032 -2.4301 14 1 1.3499 -2.9449 -3.0128 15 7 -0.6821 -3.3859 -3.2898 16 6 -0.8692 -2.4777 -4.2679 17 8 -0.0559 -1.5893 -4.4366 18 6 -2.0595 -2.5605 -5.1321 19 6 -2.3742 -1.7115 -6.1561 20 7 -3.5356 -2.1465 -6.6766 21 6 -3.9245 -3.2511 -5.9730 22 7 -3.0416 -3.4984 -5.0588 23 6 -5.1947 -4.0108 -6.2770 24 8 -6.0037 -3.1878 -7.1288 25 6 -5.3072 -2.6561 -8.2592 26 6 -4.3044 -1.5913 -7.7953 27 6 0.2278 -2.3340 -1.2757 28 1 -0.4850 0.8401 0.0004 29 1 1.0469 -4.0695 0.8267 30 1 2.7392 -3.5197 0.7478 31 1 2.9087 -4.2386 -1.5879 32 1 2.3148 -5.6005 -0.6073 33 1 0.9908 -5.3873 -2.6832 34 1 -0.0196 -5.0367 -1.2607 35 1 -1.3309 -4.0943 -3.1551 36 1 -1.8015 -0.8564 -6.4833 37 1 -4.9539 -4.9444 -6.7857 38 1 -5.7296 -4.2216 -5.3509 39 1 -4.7740 -3.4594 -8.7674 40 1 -6.0228 -2.2043 -8.9462 41 1 -4.8392 -0.6998 -7.4679 42 1 -3.6315 -1.3376 -8.6144 43 1 -0.6744 -2.6411 -0.7467 44 1 0.0984 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007641552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:51 Heat of formation + Delta-G solvation = -18.543685 kcal Electronic energy + Delta-G solvation = -27200.538161 eV Core-core repulsion = 23346.536593 eV Total energy + Delta-G solvation = -3854.001568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57271 -40.74402 -39.29210 -38.75282 -35.82496 -35.31195 -34.39476 -32.04968 -31.78554 -30.93656 -30.30662 -27.34382 -27.20902 -24.96087 -24.48934 -23.92138 -22.89561 -21.36280 -20.85021 -20.60220 -19.09708 -18.73790 -17.67822 -17.65616 -17.16084 -16.89915 -16.71048 -16.06097 -15.89642 -15.78542 -15.64966 -15.27335 -15.02551 -14.96793 -14.69938 -14.46382 -14.15673 -13.99512 -13.74242 -13.48125 -12.93585 -12.87122 -12.64960 -12.50723 -12.29238 -12.25910 -12.07797 -11.72130 -11.64092 -11.58463 -11.28078 -11.18083 -11.04562 -10.77500 -10.55987 -10.13337 -9.59777 -8.70300 -7.89002 -5.35426 0.46144 1.21587 1.40052 1.41348 1.46758 1.51606 2.22844 2.46701 2.49921 2.66434 2.94081 3.27054 3.36845 3.61570 3.72186 3.87168 3.98424 3.99651 4.12487 4.13250 4.25403 4.30741 4.35897 4.47801 4.53467 4.60590 4.64878 4.70994 4.80923 4.85753 4.91982 5.08139 5.18823 5.20473 5.27863 5.32577 5.45564 5.52326 5.60674 5.70522 5.76887 5.95466 6.35152 6.48901 6.77823 7.10358 7.28716 7.84008 8.34252 9.15899 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.003236 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.406567 B = 8651.517484 C = 9747.512646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.267 4.267 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.131 3.869 14 H 0.054 0.946 15 N -0.697 5.697 16 C 0.593 3.407 17 O -0.586 6.586 18 C -0.095 4.095 19 C 0.053 3.947 20 N -0.451 5.451 21 C 0.165 3.835 22 N -0.468 5.468 23 C 0.156 3.844 24 O -0.383 6.383 25 C 0.045 3.955 26 C 0.058 3.942 27 C 0.182 3.818 28 H 0.247 0.753 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.203 0.797 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.105 0.895 42 H 0.132 0.868 43 H -0.005 1.005 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 -10.935 -20.009 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.397 4.397 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.025 3.975 14 H 0.073 0.927 15 N -0.347 5.347 16 C 0.381 3.619 17 O -0.467 6.467 18 C -0.223 4.223 19 C -0.088 4.088 20 N -0.133 5.133 21 C -0.100 4.100 22 N -0.188 5.188 23 C 0.077 3.923 24 O -0.300 6.300 25 C -0.031 4.031 26 C -0.062 4.062 27 C 0.055 3.945 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.248 0.752 36 H 0.220 0.780 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.171 0.829 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.013 0.987 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.199 -10.733 -19.601 25.460 hybrid contribution 0.530 1.797 -0.073 1.874 sum -11.669 -8.936 -19.674 24.558 Atomic orbital electron populations 1.70193 1.06862 1.25667 1.55109 1.25851 0.96041 1.01813 1.01126 0.85365 0.77684 0.79213 0.78409 1.20972 1.22029 1.19079 1.19503 0.93124 0.86204 1.40842 0.91139 1.44255 1.35905 1.02830 1.50344 1.21190 0.97636 0.85553 0.94630 1.21899 0.96745 1.00269 0.96989 1.21654 0.99207 0.93796 0.99814 1.21586 0.86751 0.98170 0.91000 0.92738 1.45719 1.25847 1.30906 1.32201 1.17327 0.83843 0.80963 0.79793 1.90787 1.46795 1.36290 1.72816 1.20530 0.98776 0.99931 1.03047 1.22607 0.89162 1.00986 0.96048 1.45468 1.17359 1.23099 1.27328 1.24965 1.00618 0.91492 0.92932 1.70089 1.02500 1.25055 1.21206 1.21503 0.82701 0.91143 0.96913 1.88162 1.36238 1.67491 1.38109 1.23286 0.95854 0.95715 0.88259 1.23312 0.95355 0.99691 0.87835 1.20741 0.87982 0.97430 0.88353 0.94456 0.96174 0.92274 0.92776 0.88245 0.89782 0.91063 0.75188 0.78049 0.87108 0.84722 0.90231 0.82933 0.87655 0.85032 0.98740 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.42 11.19 21.65 0.24 -60.18 16 2 C -0.05 -3.23 4.91 84.86 0.42 -2.81 16 3 Si 0.97 48.94 29.59 68.60 2.03 50.97 16 4 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 5 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.27 -15.88 9.59 84.03 0.81 -15.07 16 8 H 0.07 4.02 7.89 -2.91 -0.02 4.00 16 9 N -0.61 -33.24 2.99 -699.10 -2.09 -35.33 16 10 C 0.13 5.77 6.51 86.36 0.56 6.33 16 11 C -0.12 -4.01 6.08 30.67 0.19 -3.82 16 12 C -0.11 -3.56 5.36 30.64 0.16 -3.40 16 13 C 0.13 5.71 2.60 45.09 0.12 5.83 16 14 H 0.05 2.68 7.58 -2.39 -0.02 2.66 16 15 N -0.70 -27.68 5.08 -445.40 -2.26 -29.95 16 16 C 0.59 25.34 7.78 86.63 0.67 26.01 16 17 O -0.59 -29.79 16.55 -4.12 -0.07 -29.86 16 18 C -0.09 -3.30 6.99 40.53 0.28 -3.01 16 19 C 0.05 1.47 11.38 83.92 0.95 2.42 16 20 N -0.45 -9.16 3.12 -512.40 -1.60 -10.76 16 21 C 0.17 3.75 7.79 138.04 1.08 4.83 16 22 N -0.47 -14.19 10.99 -175.89 -1.93 -16.12 16 23 C 0.16 2.13 7.29 71.36 0.52 2.65 16 24 O -0.38 -4.80 10.78 -148.98 -1.61 -6.41 16 25 C 0.05 0.27 6.81 72.13 0.49 0.76 16 26 C 0.06 0.53 7.28 86.50 0.63 1.16 16 27 C 0.18 9.91 4.89 86.36 0.42 10.33 16 28 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 29 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.41 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.20 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 40 H 0.15 -0.04 8.14 -2.38 -0.02 -0.06 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 43 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.04 2.81 6.04 -2.39 -0.01 2.80 16 Total: -1.00 -86.69 358.64 0.26 -86.42 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.25 Total: 19.01 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 7.30 Total: 32.21 kcal Atomic # 7 Polarization: -144.70 SS G_CDS: -7.65 Total: -152.34 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.67 Total: -36.27 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Total: -86.69 0.26 -86.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007641552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.880 kcal (2) G-P(sol) polarization free energy of solvation -86.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds