Wall clock time and date at job start Tue Mar 31 2020 12:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 119.99871 * 2 1 4 4 H 1.48502 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47238 * 300.00237 * 3 2 1 6 6 H 1.48505 * 109.47089 * 59.99920 * 3 2 1 7 7 C 1.38815 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99676 * 197.35995 * 7 2 1 9 9 N 1.36930 * 120.00180 * 17.36456 * 7 2 1 10 10 C 1.46927 * 120.62917 * 207.67679 * 9 7 2 11 11 C 1.53196 * 108.77288 * 233.60915 * 10 9 7 12 12 C 1.53041 * 109.31242 * 305.36273 * 11 10 9 13 13 C 1.53034 * 109.53643 * 61.36849 * 12 11 10 14 14 H 1.09002 * 109.50105 * 58.61562 * 13 12 11 15 15 N 1.46500 * 109.49760 * 178.67893 * 13 12 11 16 16 C 1.34781 * 120.00108 * 204.93670 * 15 13 12 17 17 O 1.21661 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.46926 * 119.99839 * 180.02562 * 16 15 13 19 19 C 1.41694 * 126.56073 * 359.97438 * 18 16 15 20 20 N 1.30563 * 108.19007 * 179.97438 * 19 18 16 21 21 N 1.39346 * 109.06421 * 359.96304 * 20 19 18 22 22 C 1.35149 * 108.46382 * 0.07865 * 21 20 19 23 23 O 1.35460 * 123.87567 * 179.80662 * 22 21 20 24 24 C 1.43539 * 115.04906 * 344.48266 * 23 22 21 25 25 C 1.53226 * 109.18767 * 46.91250 * 24 23 22 26 26 C 1.46797 * 127.97789 * 180.12003 * 21 20 19 27 27 C 1.46937 * 120.60681 * 27.69847 * 9 7 2 28 28 H 0.96992 * 120.00024 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58426 * 113.82433 * 10 9 7 30 30 H 1.08995 * 109.70566 * 353.46820 * 10 9 7 31 31 H 1.09007 * 109.49293 * 185.41748 * 11 10 9 32 32 H 1.08993 * 109.52259 * 65.33270 * 11 10 9 33 33 H 1.09002 * 109.46028 * 301.34462 * 12 11 10 34 34 H 1.09007 * 109.45718 * 181.38896 * 12 11 10 35 35 H 0.96997 * 119.99874 * 24.93901 * 15 13 12 36 36 H 1.07995 * 125.90754 * 359.97438 * 19 18 16 37 37 H 1.09004 * 109.52091 * 166.83496 * 24 23 22 38 38 H 1.08997 * 109.51858 * 286.95900 * 24 23 22 39 39 H 1.09006 * 109.51316 * 175.95409 * 25 24 23 40 40 H 1.09008 * 109.49413 * 55.83319 * 25 24 23 41 41 H 1.09001 * 109.75669 * 282.57983 * 26 21 20 42 42 H 1.08997 * 109.76106 * 43.33355 * 26 21 20 43 43 H 1.09004 * 109.61369 * 6.62256 * 27 9 7 44 44 H 1.08995 * 109.56350 * 246.19476 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2022 -0.0005 8 1 3.0535 -1.2236 0.2785 9 7 1.3725 -2.3609 -0.3550 10 6 1.8196 -3.6548 0.1785 11 6 2.0749 -4.6092 -0.9923 12 6 0.8193 -4.6885 -1.8637 13 6 0.5013 -3.3030 -2.4304 14 1 1.3497 -2.9449 -3.0136 15 7 -0.6824 -3.3861 -3.2897 16 6 -0.8693 -2.4792 -4.2690 17 8 -0.0552 -1.5912 -4.4392 18 6 -2.0567 -2.5622 -5.1303 19 6 -3.0874 -3.5317 -5.0557 20 7 -3.9630 -3.2681 -5.9876 21 7 -3.5506 -2.1399 -6.6938 22 6 -2.3822 -1.7094 -6.1683 23 8 -1.7012 -0.6308 -6.6240 24 6 -2.1029 -0.1614 -7.9197 25 6 -3.6318 -0.0754 -7.9725 26 6 -4.2239 -1.4837 -7.8212 27 6 0.2283 -2.3332 -1.2765 28 1 -0.4850 0.8400 0.0004 29 1 1.0471 -4.0695 0.8262 30 1 2.7395 -3.5198 0.7473 31 1 2.3142 -5.6007 -0.6079 32 1 2.9088 -4.2391 -1.5886 33 1 -0.0198 -5.0357 -1.2607 34 1 0.9900 -5.3860 -2.6838 35 1 -1.3316 -4.0938 -3.1537 36 1 -3.1396 -4.3476 -4.3501 37 1 -1.6761 0.8257 -8.0979 38 1 -1.7499 -0.8542 -8.6835 39 1 -3.9399 0.3482 -8.9284 40 1 -3.9888 0.5586 -7.1608 41 1 -4.0546 -2.0546 -8.7343 42 1 -5.2932 -1.4145 -7.6221 43 1 0.0993 -1.3247 -1.6694 44 1 -0.6739 -2.6396 -0.7473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007792117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:43 Heat of formation + Delta-G solvation = 31.981462 kcal Electronic energy + Delta-G solvation = -27623.793382 eV Core-core repulsion = 23771.982749 eV Total energy + Delta-G solvation = -3851.810633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96199 -39.11902 -38.56254 -37.01994 -34.86833 -33.89515 -32.54569 -31.15463 -30.12907 -29.78814 -28.33678 -26.60956 -25.15594 -24.03938 -22.58898 -22.03302 -21.54959 -20.01967 -19.79882 -19.28210 -18.17383 -16.90141 -16.64815 -16.53971 -15.66481 -15.37173 -15.13300 -14.92943 -14.71831 -14.55553 -13.96687 -13.80239 -13.55287 -13.45326 -13.20084 -12.89991 -12.72009 -12.26356 -12.19234 -12.05845 -11.79942 -11.73914 -11.49747 -10.92475 -10.88580 -10.64999 -10.59985 -10.36052 -10.13159 -9.85262 -9.82608 -9.39125 -9.36821 -9.17963 -8.48793 -8.32379 -8.22004 -6.54366 -5.64995 -3.07942 1.57640 1.94872 2.21872 2.84660 3.49008 3.57180 3.58620 3.69240 3.88000 3.99892 4.03561 4.39171 4.43880 4.63488 4.73964 4.78215 4.91219 5.09121 5.14090 5.29819 5.40033 5.47895 5.51287 5.57696 5.67134 5.75572 5.82818 5.96043 6.20891 6.26954 6.34834 6.46309 6.53006 6.65888 6.82472 6.89432 7.06396 7.11081 7.17843 7.43200 7.47332 7.86831 7.95556 8.21181 8.59304 8.97329 9.33944 9.98288 10.53063 11.42814 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.003907 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.264290 B = 7164.599991 C = 8582.832993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.121 3.879 14 H 0.081 0.919 15 N -0.719 5.719 16 C 0.592 3.408 17 O -0.533 6.533 18 C -0.297 4.297 19 C 0.103 3.897 20 N -0.290 5.290 21 N -0.401 5.401 22 C 0.334 3.666 23 O -0.259 6.259 24 C 0.043 3.957 25 C -0.178 4.178 26 C 0.130 3.870 27 C 0.167 3.833 28 H 0.252 0.748 29 H 0.017 0.983 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.389 0.611 36 H 0.197 0.803 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 -6.883 -17.252 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.016 3.984 14 H 0.099 0.901 15 N -0.369 5.369 16 C 0.378 3.622 17 O -0.410 6.410 18 C -0.312 4.312 19 C -0.085 4.085 20 N -0.111 5.111 21 N -0.196 5.196 22 C 0.162 3.838 23 O -0.163 6.163 24 C -0.033 4.033 25 C -0.217 4.217 26 C 0.009 3.991 27 C 0.040 3.960 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.222 0.778 36 H 0.213 0.787 37 H 0.141 0.859 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.779 -6.173 -17.922 21.329 hybrid contribution 0.471 0.825 0.176 0.966 sum -9.308 -5.348 -17.746 20.740 Atomic orbital electron populations 1.70033 1.05322 1.25321 1.53535 1.25017 0.95228 0.98405 1.00610 0.86262 0.79417 0.84172 0.77153 1.20217 1.21471 1.21858 1.19181 0.92700 0.84905 1.41664 0.91635 1.43987 1.36105 1.01539 1.49586 1.20941 0.97623 0.86942 0.92870 1.22001 0.97074 0.99214 0.98782 1.21675 0.98797 0.96203 0.98704 1.21894 0.87102 0.96603 0.92847 0.90096 1.45769 1.26302 1.31117 1.33715 1.16864 0.84039 0.81753 0.79538 1.90846 1.45169 1.34052 1.70890 1.19310 1.03581 1.02051 1.06242 1.24003 0.90353 0.98001 0.96184 1.77014 1.23167 1.01111 1.09846 1.48942 1.17371 1.24284 1.29013 1.19749 0.84095 0.87200 0.92747 1.86813 1.55372 1.40023 1.34090 1.23233 0.94409 1.02350 0.83280 1.22687 0.96447 0.96465 1.06088 1.21956 0.98648 0.91899 0.86570 1.21108 0.88534 0.99148 0.87225 0.93791 0.96480 0.92747 0.92746 0.92161 0.92284 0.93107 0.77817 0.78680 0.85893 0.90740 0.87002 0.88982 0.89181 0.87790 0.88699 0.96545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 11.19 55.49 0.62 -27.10 16 2 C 0.01 0.19 4.91 -17.42 -0.09 0.10 16 3 Si 0.90 23.18 29.59 -169.99 -5.03 18.15 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.25 -7.39 9.59 -15.06 -0.14 -7.53 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 9 N -0.59 -15.51 3.00 -172.31 -0.52 -16.02 16 10 C 0.14 3.05 6.51 -3.71 -0.02 3.03 16 11 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 12 C -0.12 -1.93 5.35 -26.69 -0.14 -2.08 16 13 C 0.12 2.49 2.60 -67.81 -0.18 2.31 16 14 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 15 N -0.72 -12.72 5.07 -54.92 -0.28 -13.00 16 16 C 0.59 11.82 7.76 -12.74 -0.10 11.72 16 17 O -0.53 -13.23 16.19 2.87 0.05 -13.18 16 18 C -0.30 -4.92 6.14 -105.07 -0.64 -5.57 16 19 C 0.10 1.34 11.51 -16.77 -0.19 1.15 16 20 N -0.29 -3.86 12.54 30.97 0.39 -3.47 16 21 N -0.40 -5.02 4.04 -60.47 -0.24 -5.26 16 22 C 0.33 5.19 7.50 -16.10 -0.12 5.07 16 23 O -0.26 -3.96 10.18 -20.42 -0.21 -4.17 16 24 C 0.04 0.37 7.01 37.27 0.26 0.63 16 25 C -0.18 -1.07 6.16 -26.35 -0.16 -1.23 16 26 C 0.13 0.95 7.41 -3.61 -0.03 0.93 16 27 C 0.17 4.25 4.88 -3.71 -0.02 4.23 16 28 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.39 5.32 7.56 -40.82 -0.31 5.01 16 36 H 0.20 1.77 7.51 -52.49 -0.39 1.37 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.87 6.04 -51.93 -0.31 2.55 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -38.58 357.06 -8.02 -46.60 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.44 Total: 1.78 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -1.74 Total: 10.30 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.03 Total: -64.86 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.16 Total: -17.35 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.03 Total: 18.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.58 -8.02 -46.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007792117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.582 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds