Wall clock time and date at job start Tue Mar 31 2020 12:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 119.99871 * 2 1 4 4 H 1.48502 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47238 * 300.00237 * 3 2 1 6 6 H 1.48505 * 109.47089 * 59.99920 * 3 2 1 7 7 C 1.38815 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99676 * 197.35995 * 7 2 1 9 9 N 1.36930 * 120.00180 * 17.36456 * 7 2 1 10 10 C 1.46927 * 120.62917 * 207.67679 * 9 7 2 11 11 C 1.53196 * 108.77288 * 233.60915 * 10 9 7 12 12 C 1.53041 * 109.31242 * 305.36273 * 11 10 9 13 13 C 1.53034 * 109.53643 * 61.36849 * 12 11 10 14 14 H 1.09002 * 109.50105 * 58.61562 * 13 12 11 15 15 N 1.46500 * 109.49760 * 178.67893 * 13 12 11 16 16 C 1.34781 * 120.00108 * 204.93670 * 15 13 12 17 17 O 1.21661 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.46926 * 119.99839 * 180.02562 * 16 15 13 19 19 C 1.41694 * 126.56073 * 359.97438 * 18 16 15 20 20 N 1.30563 * 108.19007 * 179.97438 * 19 18 16 21 21 N 1.39346 * 109.06421 * 359.96304 * 20 19 18 22 22 C 1.35149 * 108.46382 * 0.07865 * 21 20 19 23 23 O 1.35460 * 123.87567 * 179.80662 * 22 21 20 24 24 C 1.43539 * 115.04906 * 344.48266 * 23 22 21 25 25 C 1.53226 * 109.18767 * 46.91250 * 24 23 22 26 26 C 1.46797 * 127.97789 * 180.12003 * 21 20 19 27 27 C 1.46937 * 120.60681 * 27.69847 * 9 7 2 28 28 H 0.96992 * 120.00024 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58426 * 113.82433 * 10 9 7 30 30 H 1.08995 * 109.70566 * 353.46820 * 10 9 7 31 31 H 1.09007 * 109.49293 * 185.41748 * 11 10 9 32 32 H 1.08993 * 109.52259 * 65.33270 * 11 10 9 33 33 H 1.09002 * 109.46028 * 301.34462 * 12 11 10 34 34 H 1.09007 * 109.45718 * 181.38896 * 12 11 10 35 35 H 0.96997 * 119.99874 * 24.93901 * 15 13 12 36 36 H 1.07995 * 125.90754 * 359.97438 * 19 18 16 37 37 H 1.09004 * 109.52091 * 166.83496 * 24 23 22 38 38 H 1.08997 * 109.51858 * 286.95900 * 24 23 22 39 39 H 1.09006 * 109.51316 * 175.95409 * 25 24 23 40 40 H 1.09008 * 109.49413 * 55.83319 * 25 24 23 41 41 H 1.09001 * 109.75669 * 282.57983 * 26 21 20 42 42 H 1.08997 * 109.76106 * 43.33355 * 26 21 20 43 43 H 1.09004 * 109.61369 * 6.62256 * 27 9 7 44 44 H 1.08995 * 109.56350 * 246.19476 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2022 -0.0005 8 1 3.0535 -1.2236 0.2785 9 7 1.3725 -2.3609 -0.3550 10 6 1.8196 -3.6548 0.1785 11 6 2.0749 -4.6092 -0.9923 12 6 0.8193 -4.6885 -1.8637 13 6 0.5013 -3.3030 -2.4304 14 1 1.3497 -2.9449 -3.0136 15 7 -0.6824 -3.3861 -3.2897 16 6 -0.8693 -2.4792 -4.2690 17 8 -0.0552 -1.5912 -4.4392 18 6 -2.0567 -2.5622 -5.1303 19 6 -3.0874 -3.5317 -5.0557 20 7 -3.9630 -3.2681 -5.9876 21 7 -3.5506 -2.1399 -6.6938 22 6 -2.3822 -1.7094 -6.1683 23 8 -1.7012 -0.6308 -6.6240 24 6 -2.1029 -0.1614 -7.9197 25 6 -3.6318 -0.0754 -7.9725 26 6 -4.2239 -1.4837 -7.8212 27 6 0.2283 -2.3332 -1.2765 28 1 -0.4850 0.8400 0.0004 29 1 1.0471 -4.0695 0.8262 30 1 2.7395 -3.5198 0.7473 31 1 2.3142 -5.6007 -0.6079 32 1 2.9088 -4.2391 -1.5886 33 1 -0.0198 -5.0357 -1.2607 34 1 0.9900 -5.3860 -2.6838 35 1 -1.3316 -4.0938 -3.1537 36 1 -3.1396 -4.3476 -4.3501 37 1 -1.6761 0.8257 -8.0979 38 1 -1.7499 -0.8542 -8.6835 39 1 -3.9399 0.3482 -8.9284 40 1 -3.9888 0.5586 -7.1608 41 1 -4.0546 -2.0546 -8.7343 42 1 -5.2932 -1.4145 -7.6221 43 1 0.0993 -1.3247 -1.6694 44 1 -0.6739 -2.6396 -0.7473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007792117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:42 Heat of formation + Delta-G solvation = 1.699851 kcal Electronic energy + Delta-G solvation = -27625.106491 eV Core-core repulsion = 23771.982749 eV Total energy + Delta-G solvation = -3853.123742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96068 -40.60448 -39.64828 -38.74132 -35.71576 -35.65775 -34.37883 -32.11226 -31.83594 -31.26824 -29.82504 -27.36059 -27.21357 -25.16478 -23.92334 -23.63217 -22.99464 -21.29338 -20.98329 -20.72396 -19.31553 -18.71442 -17.99850 -17.54421 -17.11495 -16.74199 -16.28157 -16.13820 -15.85670 -15.76459 -15.63174 -15.26957 -15.11994 -14.81345 -14.66595 -14.34438 -14.10403 -13.92665 -13.46267 -13.40250 -12.94315 -12.72453 -12.66287 -12.62193 -12.44751 -12.20412 -12.18623 -12.02734 -11.85838 -11.63803 -11.52732 -11.21310 -10.79405 -10.54818 -10.30607 -10.03841 -9.50337 -8.66803 -7.87583 -5.33139 0.45527 1.06539 1.10868 1.39199 1.44596 1.52962 1.99330 2.33535 2.51241 2.53902 3.13171 3.28997 3.46732 3.65749 3.80095 3.88007 3.96152 3.99709 4.09081 4.20411 4.22525 4.27858 4.35722 4.48498 4.54076 4.54318 4.59373 4.70910 4.85428 4.87253 4.97834 5.06476 5.13228 5.24761 5.28686 5.37862 5.41851 5.55715 5.58226 5.64878 5.85193 6.15102 6.38046 6.42034 6.80477 7.13441 7.49969 7.87771 8.36401 9.17028 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.003907 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.264290 B = 7164.599991 C = 8582.832993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.052 4.052 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.301 1.301 6 H -0.284 1.284 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.135 3.865 14 H 0.047 0.953 15 N -0.703 5.703 16 C 0.587 3.413 17 O -0.596 6.596 18 C -0.336 4.336 19 C 0.116 3.884 20 N -0.296 5.296 21 N -0.393 5.393 22 C 0.327 3.673 23 O -0.299 6.299 24 C 0.027 3.973 25 C -0.166 4.166 26 C 0.116 3.884 27 C 0.180 3.820 28 H 0.245 0.755 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.412 0.588 36 H 0.232 0.768 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.039 0.961 44 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -8.973 -18.765 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.247 4.247 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.228 1.228 6 H -0.210 1.210 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.028 3.972 14 H 0.065 0.935 15 N -0.355 5.355 16 C 0.376 3.624 17 O -0.477 6.477 18 C -0.351 4.351 19 C -0.073 4.073 20 N -0.117 5.117 21 N -0.188 5.188 22 C 0.153 3.847 23 O -0.204 6.204 24 C -0.047 4.047 25 C -0.204 4.204 26 C -0.002 4.002 27 C 0.053 3.947 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.156 0.844 38 H 0.108 0.892 39 H 0.176 0.824 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.057 0.943 44 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -10.669 -8.329 -19.447 23.694 hybrid contribution 0.707 1.499 0.568 1.752 sum -9.962 -6.830 -18.879 22.412 Atomic orbital electron populations 1.70190 1.06767 1.25409 1.55380 1.25791 0.96011 1.01605 1.01320 0.85310 0.79055 0.80241 0.76568 1.18505 1.22810 1.21048 1.19552 0.93058 0.86325 1.40394 0.91330 1.44276 1.36038 1.02734 1.50424 1.21187 0.97560 0.85534 0.94692 1.21906 0.97016 1.00149 0.97016 1.21645 0.99136 0.93722 0.99855 1.21456 0.86904 0.98026 0.90795 0.93513 1.45533 1.26053 1.31317 1.32555 1.17431 0.84358 0.80805 0.79779 1.90799 1.47605 1.36571 1.72742 1.19230 1.03789 1.04810 1.07291 1.24465 0.88653 0.97798 0.96370 1.76967 1.23203 1.01558 1.09988 1.49345 1.16370 1.23672 1.29364 1.19896 0.85022 0.87074 0.92744 1.86764 1.56502 1.40014 1.37118 1.23711 0.96714 1.03320 0.80952 1.22697 0.94098 0.95706 1.07942 1.22517 0.99310 0.92516 0.85892 1.20784 0.88024 0.97490 0.88431 0.94549 0.95894 0.92656 0.88262 0.93192 0.90386 0.89471 0.75116 0.75187 0.84406 0.89182 0.82438 0.90421 0.86513 0.86005 0.94257 0.98151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.43 11.19 21.65 0.24 -60.19 16 2 C -0.05 -3.18 4.91 84.86 0.42 -2.76 16 3 Si 0.96 49.42 29.59 68.60 2.03 51.45 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -15.95 7.11 99.48 0.71 -15.25 16 6 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.26 -15.69 9.59 84.04 0.81 -14.88 16 8 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 9 N -0.61 -32.93 3.00 -699.08 -2.09 -35.03 16 10 C 0.14 5.66 6.51 86.36 0.56 6.22 16 11 C -0.12 -3.92 6.08 30.67 0.19 -3.74 16 12 C -0.11 -3.25 5.35 30.62 0.16 -3.08 16 13 C 0.13 5.62 2.60 45.07 0.12 5.73 16 14 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 15 N -0.70 -25.13 5.07 -445.91 -2.26 -27.40 16 16 C 0.59 24.57 7.76 86.52 0.67 25.24 16 17 O -0.60 -31.81 16.19 -1.98 -0.03 -31.85 16 18 C -0.34 -11.36 6.14 -20.15 -0.12 -11.48 16 19 C 0.12 2.86 11.51 85.74 0.99 3.85 16 20 N -0.30 -7.36 12.54 -55.94 -0.70 -8.06 16 21 N -0.39 -9.30 4.04 -456.68 -1.85 -11.15 16 22 C 0.33 10.31 7.50 84.18 0.63 10.94 16 23 O -0.30 -9.53 10.18 -85.33 -0.87 -10.40 16 24 C 0.03 0.44 7.01 72.06 0.51 0.94 16 25 C -0.17 -1.62 6.16 30.84 0.19 -1.43 16 26 C 0.12 1.39 7.41 86.50 0.64 2.03 16 27 C 0.18 9.56 4.88 86.36 0.42 9.98 16 28 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 2.26 7.94 -2.39 -0.02 2.24 16 31 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.41 10.67 7.56 -92.71 -0.70 9.97 16 36 H 0.23 3.55 7.51 -2.91 -0.02 3.53 16 37 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.16 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.04 2.53 6.04 -2.39 -0.01 2.51 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 Total: -1.00 -92.30 357.06 0.97 -91.33 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.32 Total: 13.73 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 6.18 Total: 27.56 kcal Atomic # 7 Polarization: -135.17 SS G_CDS: -6.66 Total: -141.83 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.90 Total: -42.25 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -92.30 0.97 -91.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007792117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.031 kcal (2) G-P(sol) polarization free energy of solvation -92.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds