Wall clock time and date at job start Tue Mar 31 2020 12:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21305 * 120.00172 * 2 1 4 4 N 1.34774 * 120.00042 * 180.02562 * 2 1 3 5 5 C 1.40446 * 120.00057 * 179.97438 * 4 2 1 6 6 C 1.35008 * 126.85735 * 0.17203 * 5 4 2 7 7 N 1.36775 * 108.93627 * 180.29058 * 6 5 4 8 8 H 0.96997 * 124.79730 * 179.73340 * 7 6 5 9 9 C 1.34599 * 110.41078 * 359.70887 * 7 6 5 10 10 C 1.50701 * 125.81694 * 180.02562 * 9 7 6 11 11 C 1.37826 * 108.36227 * 0.02562 * 9 7 6 12 12 C 1.47133 * 126.99302 * 179.97438 * 11 9 7 13 13 O 1.21642 * 120.00045 * 90.02346 * 12 11 9 14 14 N 1.34779 * 120.00174 * 270.01633 * 12 11 9 15 15 C 1.46492 * 120.00118 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.89195 * 328.88628 * 15 14 12 17 17 C 1.55159 * 111.00591 * 205.00380 * 15 14 12 18 18 C 1.54320 * 102.94349 * 206.42744 * 17 15 14 19 19 N 1.47018 * 107.27210 * 22.19183 * 18 17 15 20 20 C 1.36945 * 125.64695 * 181.02594 * 19 18 17 21 21 H 1.08000 * 119.99441 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00031 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00283 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99811 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46722 * 90.00437 * 24 22 20 26 26 H 1.48497 * 109.47157 * 210.00127 * 24 22 20 27 27 H 1.48494 * 109.47346 * 330.00290 * 24 22 20 28 28 C 1.47421 * 108.70379 * 1.28563 * 19 18 17 29 29 H 1.08997 * 109.46868 * 239.99875 * 1 2 3 30 30 H 1.08997 * 109.47189 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47357 * 119.99566 * 1 2 3 32 32 H 0.96996 * 120.00582 * 359.97438 * 4 2 1 33 33 H 1.07999 * 125.53816 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.47359 * 269.97624 * 10 9 7 35 35 H 1.09002 * 109.47431 * 29.98012 * 10 9 7 36 36 H 1.09002 * 109.47331 * 149.98069 * 10 9 7 37 37 H 0.97006 * 119.99512 * 0.02562 * 14 12 11 38 38 H 1.08996 * 110.71852 * 88.06245 * 17 15 14 39 39 H 1.08999 * 110.71607 * 324.79137 * 17 15 14 40 40 H 1.09010 * 109.88205 * 262.77471 * 18 17 15 41 41 H 1.08994 * 109.88352 * 141.61405 * 18 17 15 42 42 H 0.96998 * 120.00243 * 179.97438 * 23 22 20 43 43 H 1.08996 * 110.36244 * 94.48455 * 28 19 18 44 44 H 1.08997 * 110.36930 * 216.80538 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5853 -1.1672 -0.0011 6 6 4.3951 -0.0869 0.0021 7 7 5.6965 -0.5078 -0.0063 8 1 6.4683 0.0798 -0.0098 9 6 5.7550 -1.8525 -0.0086 10 6 7.0142 -2.6804 -0.0168 11 6 4.4670 -2.3431 -0.0021 12 6 4.0580 -3.7565 -0.0025 13 8 3.8946 -4.3425 1.0509 14 7 3.8643 -4.4017 -1.1698 15 6 3.4565 -5.8087 -1.1701 16 1 3.8583 -6.3301 -0.3012 17 6 3.8829 -6.5111 -2.4862 18 6 2.8500 -7.6498 -2.6206 19 7 1.6723 -7.2667 -1.8284 20 6 0.5381 -8.0176 -1.6703 21 1 -0.2757 -7.6457 -1.0655 22 6 0.4345 -9.2567 -2.2873 23 7 1.4265 -9.7102 -3.0239 24 14 -1.1124 -10.2813 -2.0709 25 1 -2.0836 -9.9437 -3.1426 26 1 -0.7666 -11.7231 -2.1526 27 1 -1.7169 -9.9915 -0.7459 28 6 1.9121 -5.9375 -1.2376 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6960 -2.0072 -0.0005 33 1 4.0685 0.9425 0.0052 34 1 7.3118 -2.8789 -1.0464 35 1 7.8097 -2.1371 0.4931 36 1 6.8318 -3.6243 0.4970 37 1 3.9949 -3.9344 -2.0097 38 1 4.8919 -6.9140 -2.3990 39 1 3.8121 -5.8247 -3.3300 40 1 3.2701 -8.5788 -2.2348 41 1 2.5690 -7.7739 -3.6664 42 1 1.3542 -10.5762 -3.4548 43 1 1.4916 -5.1584 -1.8733 44 1 1.4833 -5.8842 -0.2369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015027422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:35 Heat of formation + Delta-G solvation = -2.470210 kcal Electronic energy + Delta-G solvation = -26963.580567 eV Core-core repulsion = 23110.275997 eV Total energy + Delta-G solvation = -3853.304569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50261 -39.60795 -39.10168 -37.08904 -34.92554 -33.91076 -32.03159 -31.61805 -30.99324 -29.37645 -29.00384 -27.17135 -26.10019 -24.50272 -22.60645 -22.24918 -20.32178 -20.15234 -19.86009 -19.28016 -18.34077 -16.94121 -16.48263 -16.29245 -15.98179 -15.69203 -15.59023 -14.79275 -14.59237 -14.47080 -14.09004 -13.84105 -13.77382 -13.15616 -12.99056 -12.94832 -12.83106 -12.69022 -12.47385 -12.41554 -12.23630 -11.94197 -11.77692 -11.01477 -10.98577 -10.91178 -10.74455 -10.37339 -10.10443 -10.06419 -9.89907 -9.76014 -9.63781 -8.69400 -8.58328 -8.42981 -7.84186 -6.83702 -5.71159 -3.04738 1.94781 1.98263 2.69787 2.83138 2.92807 3.19156 3.41082 3.46277 3.48284 3.65668 4.49528 4.51796 4.61640 4.88270 4.99457 5.07691 5.14044 5.23403 5.29162 5.33540 5.45041 5.58403 5.62562 5.63098 5.65886 5.74990 5.77420 5.81494 5.96405 6.21269 6.34915 6.43285 6.60231 6.67474 6.69467 6.79751 7.00820 7.25492 7.39616 7.54375 7.58423 7.77488 7.84675 7.94691 8.25030 8.50000 9.21994 9.82088 10.47036 11.40681 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003225 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.813292 B = 8680.179433 C =10135.468978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.541 6.541 4 N -0.640 5.640 5 C 0.091 3.909 6 C -0.028 4.028 7 N -0.546 5.546 8 H 0.418 0.582 9 C 0.083 3.917 10 C -0.092 4.092 11 C -0.234 4.234 12 C 0.590 3.410 13 O -0.536 6.536 14 N -0.708 5.708 15 C 0.125 3.875 16 H 0.097 0.903 17 C -0.149 4.149 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.130 3.870 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.415 0.585 33 H 0.193 0.807 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.252 0.748 43 H 0.019 0.981 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 19.796 3.020 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.419 6.419 4 N -0.283 5.283 5 C -0.009 4.009 6 C -0.158 4.158 7 N -0.143 5.143 8 H 0.255 0.745 9 C -0.034 4.034 10 C -0.150 4.150 11 C -0.246 4.246 12 C 0.375 3.625 13 O -0.413 6.413 14 N -0.358 5.358 15 C 0.020 3.980 16 H 0.115 0.885 17 C -0.188 4.188 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.002 3.998 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.251 0.749 33 H 0.209 0.791 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.899 19.991 3.718 22.196 hybrid contribution -0.752 -0.565 -0.389 1.018 sum 8.147 19.426 3.329 21.327 Atomic orbital electron populations 1.21902 0.90491 1.05848 1.04980 1.20941 0.90888 0.82712 0.75481 1.90570 1.70297 1.31440 1.49544 1.43011 1.03828 1.09973 1.71517 1.17774 0.82334 0.92197 1.08596 1.22045 0.81181 0.99552 1.13041 1.41366 1.08195 1.05852 1.58838 0.74475 1.20267 0.95095 0.83430 1.04652 1.20446 0.91927 0.99241 1.03337 1.19989 0.91692 0.91810 1.21123 1.17373 0.76594 0.84739 0.83842 1.90815 1.50979 1.68015 1.31447 1.46097 1.68902 1.12713 1.08130 1.22382 0.96489 0.79577 0.99524 0.88485 1.23177 1.00503 0.99641 0.95496 1.21141 0.84479 0.92589 0.96363 1.44386 1.16203 1.15536 1.56929 1.19069 0.92690 0.97902 1.25882 0.90393 1.24796 0.98152 0.97634 0.99832 1.69946 1.30875 1.19870 1.36378 0.86106 0.82269 0.79608 0.77716 1.21635 1.21664 1.20650 1.21860 0.92206 0.89019 0.96714 0.88929 0.88592 0.88827 0.74905 0.79089 0.90197 0.91090 0.89606 0.76793 0.91638 0.92083 0.93244 0.93656 0.93746 0.96360 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.32 36.00 0.37 -0.85 16 2 C 0.51 5.65 7.91 -10.99 -0.09 5.56 16 3 O -0.54 -7.42 14.30 5.54 0.08 -7.34 16 4 N -0.64 -7.43 5.46 -8.52 -0.05 -7.47 16 5 C 0.09 1.18 7.22 -81.52 -0.59 0.60 16 6 C -0.03 -0.33 10.79 -16.49 -0.18 -0.50 16 7 N -0.55 -4.83 5.90 -8.68 -0.05 -4.89 16 8 H 0.42 2.19 8.96 -40.82 -0.37 1.83 16 9 C 0.08 0.88 7.21 -81.53 -0.59 0.29 16 10 C -0.09 -0.73 10.25 36.01 0.37 -0.36 16 11 C -0.23 -3.11 6.09 -102.90 -0.63 -3.73 16 12 C 0.59 9.18 7.32 -12.65 -0.09 9.09 16 13 O -0.54 -10.56 16.75 5.24 0.09 -10.47 16 14 N -0.71 -10.21 5.19 -52.78 -0.27 -10.49 16 15 C 0.13 2.23 3.44 -65.67 -0.23 2.01 16 16 H 0.10 1.93 7.54 -51.93 -0.39 1.54 16 17 C -0.15 -2.63 6.59 -24.90 -0.16 -2.80 16 18 C 0.18 4.25 5.37 -3.07 -0.02 4.23 16 19 N -0.60 -15.38 3.39 -169.94 -0.58 -15.95 16 20 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.89 10.31 55.49 0.57 -26.32 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 C 0.13 2.71 6.93 -2.41 -0.02 2.70 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.42 4.47 8.82 -40.82 -0.36 4.11 16 33 H 0.19 2.23 5.86 -52.49 -0.31 1.92 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.83 7.95 -51.93 -0.41 0.41 16 37 H 0.40 4.85 8.55 -40.82 -0.35 4.50 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 40 H 0.05 1.30 7.38 -51.92 -0.38 0.92 16 41 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -35.66 369.22 -8.06 -43.72 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.30 Total: 7.19 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -2.09 Total: 9.40 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.38 Total: -65.12 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.66 -8.06 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015027422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.250 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds