Wall clock time and date at job start Tue Mar 31 2020 12:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21305 * 120.00172 * 2 1 4 4 N 1.34774 * 120.00042 * 180.02562 * 2 1 3 5 5 C 1.40446 * 120.00057 * 179.97438 * 4 2 1 6 6 C 1.35008 * 126.85735 * 0.17203 * 5 4 2 7 7 N 1.36775 * 108.93627 * 180.29058 * 6 5 4 8 8 H 0.96997 * 124.79730 * 179.73340 * 7 6 5 9 9 C 1.34599 * 110.41078 * 359.70887 * 7 6 5 10 10 C 1.50701 * 125.81694 * 180.02562 * 9 7 6 11 11 C 1.37826 * 108.36227 * 0.02562 * 9 7 6 12 12 C 1.47133 * 126.99302 * 179.97438 * 11 9 7 13 13 O 1.21642 * 120.00045 * 90.02346 * 12 11 9 14 14 N 1.34779 * 120.00174 * 270.01633 * 12 11 9 15 15 C 1.46492 * 120.00118 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.89195 * 328.88628 * 15 14 12 17 17 C 1.55159 * 111.00591 * 205.00380 * 15 14 12 18 18 C 1.54320 * 102.94349 * 206.42744 * 17 15 14 19 19 N 1.47018 * 107.27210 * 22.19183 * 18 17 15 20 20 C 1.36945 * 125.64695 * 181.02594 * 19 18 17 21 21 H 1.08000 * 119.99441 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00031 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00283 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99811 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46722 * 90.00437 * 24 22 20 26 26 H 1.48497 * 109.47157 * 210.00127 * 24 22 20 27 27 H 1.48494 * 109.47346 * 330.00290 * 24 22 20 28 28 C 1.47421 * 108.70379 * 1.28563 * 19 18 17 29 29 H 1.08997 * 109.46868 * 239.99875 * 1 2 3 30 30 H 1.08997 * 109.47189 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47357 * 119.99566 * 1 2 3 32 32 H 0.96996 * 120.00582 * 359.97438 * 4 2 1 33 33 H 1.07999 * 125.53816 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.47359 * 269.97624 * 10 9 7 35 35 H 1.09002 * 109.47431 * 29.98012 * 10 9 7 36 36 H 1.09002 * 109.47331 * 149.98069 * 10 9 7 37 37 H 0.97006 * 119.99512 * 0.02562 * 14 12 11 38 38 H 1.08996 * 110.71852 * 88.06245 * 17 15 14 39 39 H 1.08999 * 110.71607 * 324.79137 * 17 15 14 40 40 H 1.09010 * 109.88205 * 262.77471 * 18 17 15 41 41 H 1.08994 * 109.88352 * 141.61405 * 18 17 15 42 42 H 0.96998 * 120.00243 * 179.97438 * 23 22 20 43 43 H 1.08996 * 110.36244 * 94.48455 * 28 19 18 44 44 H 1.08997 * 110.36930 * 216.80538 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5853 -1.1672 -0.0011 6 6 4.3951 -0.0869 0.0021 7 7 5.6965 -0.5078 -0.0063 8 1 6.4683 0.0798 -0.0098 9 6 5.7550 -1.8525 -0.0086 10 6 7.0142 -2.6804 -0.0168 11 6 4.4670 -2.3431 -0.0021 12 6 4.0580 -3.7565 -0.0025 13 8 3.8946 -4.3425 1.0509 14 7 3.8643 -4.4017 -1.1698 15 6 3.4565 -5.8087 -1.1701 16 1 3.8583 -6.3301 -0.3012 17 6 3.8829 -6.5111 -2.4862 18 6 2.8500 -7.6498 -2.6206 19 7 1.6723 -7.2667 -1.8284 20 6 0.5381 -8.0176 -1.6703 21 1 -0.2757 -7.6457 -1.0655 22 6 0.4345 -9.2567 -2.2873 23 7 1.4265 -9.7102 -3.0239 24 14 -1.1124 -10.2813 -2.0709 25 1 -2.0836 -9.9437 -3.1426 26 1 -0.7666 -11.7231 -2.1526 27 1 -1.7169 -9.9915 -0.7459 28 6 1.9121 -5.9375 -1.2376 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6960 -2.0072 -0.0005 33 1 4.0685 0.9425 0.0052 34 1 7.3118 -2.8789 -1.0464 35 1 7.8097 -2.1371 0.4931 36 1 6.8318 -3.6243 0.4970 37 1 3.9949 -3.9344 -2.0097 38 1 4.8919 -6.9140 -2.3990 39 1 3.8121 -5.8247 -3.3300 40 1 3.2701 -8.5788 -2.2348 41 1 2.5690 -7.7739 -3.6664 42 1 1.3542 -10.5762 -3.4548 43 1 1.4916 -5.1584 -1.8733 44 1 1.4833 -5.8842 -0.2369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015027422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:35 Heat of formation + Delta-G solvation = -29.315170 kcal Electronic energy + Delta-G solvation = -26964.744652 eV Core-core repulsion = 23110.275997 eV Total energy + Delta-G solvation = -3854.468654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38679 -40.63514 -40.29788 -38.73909 -35.82352 -35.54044 -33.75035 -32.47772 -31.90798 -30.94812 -29.99647 -28.76481 -27.07289 -26.33027 -23.80289 -23.08771 -22.05909 -21.70363 -20.87137 -20.37189 -19.26745 -18.85260 -17.64793 -17.27223 -17.00514 -16.78451 -16.62896 -16.46223 -16.01829 -15.62701 -15.42573 -15.14049 -14.80856 -14.55668 -14.13355 -13.93940 -13.88356 -13.71062 -13.58099 -13.55790 -13.39630 -13.08744 -12.93987 -12.79669 -12.72106 -12.36712 -12.12082 -12.02599 -11.88988 -11.79175 -11.56089 -11.08348 -10.91182 -10.69899 -10.07256 -9.34305 -8.89663 -8.71583 -7.84459 -5.20350 1.06472 1.12613 1.47323 1.49295 1.54624 1.58091 1.94787 2.03551 2.22029 2.50592 2.62297 3.34506 3.70394 3.75780 3.78106 3.85192 4.07937 4.08740 4.23011 4.25874 4.42090 4.51624 4.62408 4.63339 4.73983 4.75244 4.79768 4.89867 4.92050 4.93126 5.00621 5.09033 5.12194 5.20313 5.44851 5.55593 5.66626 5.75957 5.79574 5.92458 6.20408 6.44179 6.61522 6.67987 7.09962 7.11062 7.28865 7.76959 8.40268 9.25634 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003225 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.813292 B = 8680.179433 C =10135.468978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.505 3.495 3 O -0.572 6.572 4 N -0.642 5.642 5 C 0.071 3.929 6 C -0.031 4.031 7 N -0.526 5.526 8 H 0.438 0.562 9 C 0.102 3.898 10 C -0.092 4.092 11 C -0.269 4.269 12 C 0.600 3.400 13 O -0.582 6.582 14 N -0.691 5.691 15 C 0.144 3.856 16 H 0.077 0.923 17 C -0.128 4.128 18 C 0.185 3.815 19 N -0.625 5.625 20 C -0.246 4.246 21 H 0.080 0.920 22 C -0.062 4.062 23 N -0.949 5.949 24 Si 0.978 3.022 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.271 1.271 28 C 0.129 3.871 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.417 0.583 33 H 0.190 0.810 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.414 0.586 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.248 0.752 43 H 0.034 0.966 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 21.448 2.744 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.285 5.285 5 C -0.030 4.030 6 C -0.161 4.161 7 N -0.124 5.124 8 H 0.278 0.722 9 C -0.018 4.018 10 C -0.149 4.149 11 C -0.281 4.281 12 C 0.387 3.613 13 O -0.462 6.462 14 N -0.341 5.341 15 C 0.038 3.962 16 H 0.095 0.905 17 C -0.166 4.166 18 C 0.059 3.941 19 N -0.352 5.352 20 C -0.375 4.375 21 H 0.097 0.903 22 C -0.256 4.256 23 N -0.598 5.598 24 Si 0.806 3.194 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.196 1.196 28 C 0.002 3.998 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.253 0.747 33 H 0.207 0.793 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.664 21.708 3.425 24.008 hybrid contribution -0.951 -1.021 -0.278 1.423 sum 8.713 20.687 3.148 22.667 Atomic orbital electron populations 1.21939 0.87437 1.06752 1.06369 1.21657 0.92329 0.82003 0.74424 1.90548 1.71231 1.32337 1.51020 1.43125 1.03640 1.10322 1.71381 1.18085 0.83089 0.92500 1.09312 1.22019 0.81997 0.99139 1.12987 1.41318 1.08177 1.05616 1.57264 0.72162 1.20616 0.95095 0.84039 1.02008 1.20561 0.91363 0.98243 1.04755 1.19822 0.93162 0.90388 1.24764 1.17638 0.75216 0.85421 0.83038 1.90793 1.52975 1.69284 1.33101 1.45839 1.68209 1.11204 1.08879 1.21897 0.94075 0.81359 0.98865 0.90514 1.22990 0.99607 0.97830 0.96194 1.20930 0.85342 0.93718 0.94084 1.44669 1.16094 1.16962 1.57511 1.19439 0.93738 0.98576 1.25699 0.90261 1.25623 1.01199 0.98818 0.99918 1.70158 1.32565 1.19865 1.37172 0.85085 0.78786 0.77485 0.78011 1.21018 1.21983 1.19641 1.21977 0.94564 0.87439 0.95793 0.87503 0.87959 0.87270 0.74724 0.79303 0.88218 0.88277 0.91376 0.74927 0.89243 0.89261 0.96844 0.96590 0.94290 0.94813 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.32 71.24 0.74 -1.36 16 2 C 0.51 10.78 7.91 87.66 0.69 11.47 16 3 O -0.57 -15.42 14.30 -3.11 -0.04 -15.46 16 4 N -0.64 -14.50 5.46 -299.24 -1.63 -16.13 16 5 C 0.07 1.76 7.22 39.31 0.28 2.05 16 6 C -0.03 -0.66 10.79 83.18 0.90 0.23 16 7 N -0.53 -7.98 5.90 -181.38 -1.07 -9.05 16 8 H 0.44 3.17 8.96 -92.71 -0.83 2.34 16 9 C 0.10 1.91 7.21 42.04 0.30 2.21 16 10 C -0.09 -1.18 10.25 71.24 0.73 -0.45 16 11 C -0.27 -6.81 6.09 -18.75 -0.11 -6.92 16 12 C 0.60 18.22 7.32 86.58 0.63 18.86 16 13 O -0.58 -23.09 16.75 -4.16 -0.07 -23.16 16 14 N -0.69 -18.84 5.19 -439.13 -2.28 -21.12 16 15 C 0.14 5.03 3.44 46.46 0.16 5.19 16 16 H 0.08 3.06 7.54 -2.39 -0.02 3.04 16 17 C -0.13 -4.30 6.59 31.78 0.21 -4.09 16 18 C 0.18 8.90 5.37 86.73 0.47 9.37 16 19 N -0.63 -32.39 3.39 -691.57 -2.35 -34.73 16 20 C -0.25 -13.95 10.28 84.03 0.86 -13.09 16 21 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 23 N -0.95 -56.73 10.31 21.65 0.22 -56.50 16 24 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.13 5.39 6.93 86.93 0.60 5.99 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.18 8.12 -2.39 -0.02 1.16 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.42 8.79 8.82 -92.71 -0.82 7.98 16 33 H 0.19 4.24 5.86 -2.91 -0.02 4.23 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 1.18 7.95 -2.39 -0.02 1.16 16 37 H 0.41 8.98 8.55 -92.70 -0.79 8.18 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 40 H 0.01 0.73 7.38 -2.38 -0.02 0.71 16 41 H 0.02 0.85 7.51 -2.39 -0.02 0.83 16 42 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 43 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.10 369.22 0.36 -79.74 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -1.38 Total: 22.14 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 6.93 Total: 26.36 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -7.11 Total: -137.54 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.11 Total: -38.63 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -80.10 0.36 -79.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015027422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.426 kcal (2) G-P(sol) polarization free energy of solvation -80.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds