Wall clock time and date at job start Tue Mar 31 2020 12:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21306 * 120.00105 * 2 1 4 4 N 1.34778 * 120.00097 * 179.97438 * 2 1 3 5 5 C 1.40444 * 120.00133 * 180.02562 * 4 2 1 6 6 C 1.35014 * 126.85888 * 0.17196 * 5 4 2 7 7 N 1.36770 * 108.93554 * 180.28696 * 6 5 4 8 8 H 0.97007 * 124.79022 * 179.69272 * 7 6 5 9 9 C 1.34587 * 110.41526 * 359.71910 * 7 6 5 10 10 C 1.50700 * 125.82178 * 180.02562 * 9 7 6 11 11 C 1.37832 * 108.36192 * 359.97438 * 9 7 6 12 12 C 1.47136 * 126.99565 * 180.02562 * 11 9 7 13 13 O 1.21635 * 120.00047 * 90.02157 * 12 11 9 14 14 N 1.34779 * 119.99469 * 270.02450 * 12 11 9 15 15 C 1.46506 * 119.99461 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.88944 * 31.11911 * 15 14 12 17 17 C 1.55154 * 111.00346 * 155.00110 * 15 14 12 18 18 C 1.54316 * 102.94339 * 153.57490 * 17 15 14 19 19 N 1.47023 * 107.27490 * 337.80367 * 18 17 15 20 20 C 1.36934 * 125.65242 * 178.89343 * 19 18 17 21 21 H 1.07997 * 119.99883 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00177 * 0.02879 * 20 19 18 23 23 N 1.31622 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46805 * 90.00113 * 24 22 20 26 26 H 1.48501 * 109.46874 * 210.00033 * 24 22 20 27 27 H 1.48495 * 109.47219 * 330.00026 * 24 22 20 28 28 C 1.47433 * 108.69869 * 358.94415 * 19 18 17 29 29 H 1.09001 * 109.47129 * 240.00445 * 1 2 3 30 30 H 1.08999 * 109.47417 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46854 * 120.00484 * 1 2 3 32 32 H 0.97000 * 120.00129 * 0.02562 * 4 2 1 33 33 H 1.08002 * 125.53451 * 0.03073 * 6 5 4 34 34 H 1.08999 * 109.46986 * 269.97457 * 10 9 7 35 35 H 1.09000 * 109.46906 * 29.97276 * 10 9 7 36 36 H 1.09003 * 109.47325 * 149.97273 * 10 9 7 37 37 H 0.96995 * 120.00725 * 0.02562 * 14 12 11 38 38 H 1.09002 * 110.72211 * 271.93912 * 17 15 14 39 39 H 1.09005 * 110.72174 * 35.20972 * 17 15 14 40 40 H 1.08999 * 109.88620 * 97.22533 * 18 17 15 41 41 H 1.09001 * 109.88481 * 218.38817 * 18 17 15 42 42 H 0.97000 * 120.00045 * 180.02562 * 23 22 20 43 43 H 1.09006 * 110.36319 * 265.28904 * 28 19 18 44 44 H 1.08995 * 110.36350 * 142.96557 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5853 -1.1672 0.0011 6 6 4.3952 -0.0870 0.0044 7 7 5.6965 -0.5078 -0.0028 8 1 6.4683 0.0798 -0.0064 9 6 5.7550 -1.8524 -0.0046 10 6 7.0142 -2.6804 -0.0114 11 6 4.4670 -2.3431 0.0021 12 6 4.0580 -3.7565 0.0033 13 8 3.8942 -4.3413 1.0572 14 7 3.8648 -4.4030 -1.1634 15 6 3.4570 -5.8102 -1.1621 16 1 2.8475 -6.0374 -0.2875 17 6 2.7080 -6.1733 -2.4715 18 6 2.9704 -7.6875 -2.6113 19 7 4.1785 -7.9951 -1.8318 20 6 4.7360 -9.2365 -1.6802 21 1 5.6282 -9.3587 -1.0841 22 6 4.1544 -10.3380 -2.2928 23 7 3.0668 -10.1892 -3.0190 24 14 4.9154 -12.0315 -2.0867 25 1 4.3286 -12.6961 -0.8955 26 1 4.6394 -12.8486 -3.2956 27 1 6.3830 -11.8960 -1.9052 28 6 4.6895 -6.7455 -1.2392 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6959 -2.0073 0.0005 33 1 4.0685 0.9425 0.0076 34 1 7.3126 -2.8793 -1.0407 35 1 7.8092 -2.1368 0.4989 36 1 6.8313 -3.6241 0.5026 37 1 3.9958 -3.9368 -2.0038 38 1 1.6408 -5.9743 -2.3732 39 1 3.1263 -5.6295 -3.3186 40 1 2.1227 -8.2486 -2.2180 41 1 3.1311 -7.9407 -3.6592 42 1 2.6602 -10.9590 -3.4468 43 1 5.4575 -6.3091 -1.8780 44 1 5.0862 -6.9333 -0.2416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015027425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:38 Heat of formation + Delta-G solvation = -2.362881 kcal Electronic energy + Delta-G solvation = -26855.119811 eV Core-core repulsion = 23001.819896 eV Total energy + Delta-G solvation = -3853.299915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51276 -39.65303 -39.10638 -37.08983 -34.97534 -33.90886 -32.01924 -31.61209 -31.02276 -29.39413 -29.01298 -27.18539 -26.07890 -24.49807 -22.60276 -22.29470 -20.32373 -20.14393 -19.90950 -19.26927 -18.36312 -16.95105 -16.47221 -16.30479 -16.00982 -15.72388 -15.64147 -14.73434 -14.59205 -14.47717 -14.16113 -13.89474 -13.74817 -13.12677 -12.99311 -12.94282 -12.78820 -12.75581 -12.51722 -12.40820 -12.22304 -11.92411 -11.77969 -11.05194 -10.99209 -10.89148 -10.74664 -10.37394 -10.12140 -10.09380 -9.89562 -9.75186 -9.63462 -8.69248 -8.57820 -8.42989 -7.86130 -6.82787 -5.70490 -3.03848 1.94094 1.96180 2.66909 2.82148 2.89127 3.17990 3.41935 3.46798 3.48459 3.65355 4.43049 4.52529 4.63955 4.88855 4.93869 5.04569 5.07739 5.21768 5.33082 5.37239 5.45566 5.51843 5.60259 5.64884 5.71590 5.74573 5.77156 5.82636 5.95483 6.21474 6.35185 6.42710 6.62160 6.66855 6.71358 6.78701 7.01697 7.21993 7.37932 7.54914 7.58634 7.77859 7.84976 7.89212 8.25753 8.50049 9.22887 9.82884 10.47897 11.41411 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.002856 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.287046 B = 9802.216424 C =10823.754704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.540 6.540 4 N -0.640 5.640 5 C 0.089 3.911 6 C -0.028 4.028 7 N -0.546 5.546 8 H 0.419 0.581 9 C 0.087 3.913 10 C -0.094 4.094 11 C -0.235 4.235 12 C 0.590 3.410 13 O -0.536 6.536 14 N -0.708 5.708 15 C 0.125 3.875 16 H 0.096 0.904 17 C -0.149 4.149 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.130 3.870 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.414 0.586 33 H 0.192 0.808 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.252 0.748 43 H 0.020 0.980 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 22.399 3.017 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.417 6.417 4 N -0.283 5.283 5 C -0.012 4.012 6 C -0.158 4.158 7 N -0.142 5.142 8 H 0.256 0.744 9 C -0.031 4.031 10 C -0.151 4.151 11 C -0.247 4.247 12 C 0.375 3.625 13 O -0.413 6.413 14 N -0.358 5.358 15 C 0.020 3.980 16 H 0.114 0.886 17 C -0.188 4.188 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.002 3.998 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.209 0.791 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.149 22.594 3.700 22.895 hybrid contribution 0.421 -0.910 -0.366 1.068 sum 0.570 21.684 3.334 21.946 Atomic orbital electron populations 1.21897 0.90561 1.05873 1.04808 1.20933 0.90850 0.82763 0.75624 1.90579 1.70270 1.31425 1.49423 1.42978 1.03860 1.09836 1.71614 1.17762 0.82242 0.92241 1.08917 1.22034 0.81229 0.99520 1.12985 1.41379 1.08196 1.05893 1.58779 0.74435 1.20305 0.95184 0.83378 1.04211 1.20472 0.91843 0.99296 1.03525 1.19983 0.91694 0.91764 1.21261 1.17369 0.76647 0.84669 0.83841 1.90813 1.50756 1.68299 1.31387 1.46097 1.69129 1.12479 1.08138 1.22333 0.97397 0.78746 0.99498 0.88556 1.23177 0.99261 1.00801 0.95564 1.21139 0.90001 0.86894 0.96532 1.44393 1.28933 1.02283 1.57475 1.19069 1.07368 0.82737 1.26240 0.90397 1.24798 0.97809 0.97970 0.99918 1.69947 1.21337 1.28956 1.36887 0.86101 0.78438 0.84047 0.77083 1.21573 1.21701 1.20710 1.21819 0.93705 0.87488 0.96749 0.88990 0.88577 0.88956 0.75087 0.79124 0.90060 0.91068 0.89435 0.76788 0.91680 0.92070 0.93268 0.93640 0.93766 0.96278 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.32 36.00 0.37 -0.63 16 2 C 0.51 5.16 7.91 -10.99 -0.09 5.07 16 3 O -0.54 -7.05 14.30 5.54 0.08 -6.97 16 4 N -0.64 -6.81 5.46 -8.52 -0.05 -6.85 16 5 C 0.09 1.11 7.22 -81.52 -0.59 0.52 16 6 C -0.03 -0.31 10.79 -16.49 -0.18 -0.49 16 7 N -0.55 -4.91 5.90 -8.68 -0.05 -4.96 16 8 H 0.42 2.29 8.96 -40.82 -0.37 1.92 16 9 C 0.09 0.95 7.21 -81.53 -0.59 0.36 16 10 C -0.09 -0.84 10.25 36.01 0.37 -0.47 16 11 C -0.23 -3.12 6.09 -102.90 -0.63 -3.74 16 12 C 0.59 9.18 7.32 -12.65 -0.09 9.08 16 13 O -0.54 -10.55 16.75 5.25 0.09 -10.47 16 14 N -0.71 -10.20 5.19 -52.89 -0.27 -10.48 16 15 C 0.13 2.23 3.42 -65.78 -0.23 2.01 16 16 H 0.10 1.90 7.54 -51.93 -0.39 1.51 16 17 C -0.15 -2.62 6.60 -24.90 -0.16 -2.78 16 18 C 0.18 4.25 5.37 -3.07 -0.02 4.24 16 19 N -0.60 -15.48 3.39 -170.07 -0.58 -16.06 16 20 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.97 10.31 55.49 0.57 -26.39 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.13 2.76 6.93 -2.52 -0.02 2.74 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.41 3.86 8.83 -40.82 -0.36 3.50 16 33 H 0.19 2.18 5.86 -52.49 -0.31 1.87 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 37 H 0.40 4.84 8.55 -40.82 -0.35 4.49 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 40 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 41 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -35.87 369.21 -8.07 -43.94 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.30 Total: 6.45 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -2.09 Total: 9.05 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.38 Total: -64.75 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.87 -8.07 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015027425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.578 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds