Wall clock time and date at job start Tue Mar 31 2020 12:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21306 * 120.00105 * 2 1 4 4 N 1.34778 * 120.00097 * 179.97438 * 2 1 3 5 5 C 1.40444 * 120.00133 * 180.02562 * 4 2 1 6 6 C 1.35014 * 126.85888 * 0.17196 * 5 4 2 7 7 N 1.36770 * 108.93554 * 180.28696 * 6 5 4 8 8 H 0.97007 * 124.79022 * 179.69272 * 7 6 5 9 9 C 1.34587 * 110.41526 * 359.71910 * 7 6 5 10 10 C 1.50700 * 125.82178 * 180.02562 * 9 7 6 11 11 C 1.37832 * 108.36192 * 359.97438 * 9 7 6 12 12 C 1.47136 * 126.99565 * 180.02562 * 11 9 7 13 13 O 1.21635 * 120.00047 * 90.02157 * 12 11 9 14 14 N 1.34779 * 119.99469 * 270.02450 * 12 11 9 15 15 C 1.46506 * 119.99461 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.88944 * 31.11911 * 15 14 12 17 17 C 1.55154 * 111.00346 * 155.00110 * 15 14 12 18 18 C 1.54316 * 102.94339 * 153.57490 * 17 15 14 19 19 N 1.47023 * 107.27490 * 337.80367 * 18 17 15 20 20 C 1.36934 * 125.65242 * 178.89343 * 19 18 17 21 21 H 1.07997 * 119.99883 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00177 * 0.02879 * 20 19 18 23 23 N 1.31622 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46805 * 90.00113 * 24 22 20 26 26 H 1.48501 * 109.46874 * 210.00033 * 24 22 20 27 27 H 1.48495 * 109.47219 * 330.00026 * 24 22 20 28 28 C 1.47433 * 108.69869 * 358.94415 * 19 18 17 29 29 H 1.09001 * 109.47129 * 240.00445 * 1 2 3 30 30 H 1.08999 * 109.47417 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46854 * 120.00484 * 1 2 3 32 32 H 0.97000 * 120.00129 * 0.02562 * 4 2 1 33 33 H 1.08002 * 125.53451 * 0.03073 * 6 5 4 34 34 H 1.08999 * 109.46986 * 269.97457 * 10 9 7 35 35 H 1.09000 * 109.46906 * 29.97276 * 10 9 7 36 36 H 1.09003 * 109.47325 * 149.97273 * 10 9 7 37 37 H 0.96995 * 120.00725 * 0.02562 * 14 12 11 38 38 H 1.09002 * 110.72211 * 271.93912 * 17 15 14 39 39 H 1.09005 * 110.72174 * 35.20972 * 17 15 14 40 40 H 1.08999 * 109.88620 * 97.22533 * 18 17 15 41 41 H 1.09001 * 109.88481 * 218.38817 * 18 17 15 42 42 H 0.97000 * 120.00045 * 180.02562 * 23 22 20 43 43 H 1.09006 * 110.36319 * 265.28904 * 28 19 18 44 44 H 1.08995 * 110.36350 * 142.96557 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5853 -1.1672 0.0011 6 6 4.3952 -0.0870 0.0044 7 7 5.6965 -0.5078 -0.0028 8 1 6.4683 0.0798 -0.0064 9 6 5.7550 -1.8524 -0.0046 10 6 7.0142 -2.6804 -0.0114 11 6 4.4670 -2.3431 0.0021 12 6 4.0580 -3.7565 0.0033 13 8 3.8942 -4.3413 1.0572 14 7 3.8648 -4.4030 -1.1634 15 6 3.4570 -5.8102 -1.1621 16 1 2.8475 -6.0374 -0.2875 17 6 2.7080 -6.1733 -2.4715 18 6 2.9704 -7.6875 -2.6113 19 7 4.1785 -7.9951 -1.8318 20 6 4.7360 -9.2365 -1.6802 21 1 5.6282 -9.3587 -1.0841 22 6 4.1544 -10.3380 -2.2928 23 7 3.0668 -10.1892 -3.0190 24 14 4.9154 -12.0315 -2.0867 25 1 4.3286 -12.6961 -0.8955 26 1 4.6394 -12.8486 -3.2956 27 1 6.3830 -11.8960 -1.9052 28 6 4.6895 -6.7455 -1.2392 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6959 -2.0073 0.0005 33 1 4.0685 0.9425 0.0076 34 1 7.3126 -2.8793 -1.0407 35 1 7.8092 -2.1368 0.4989 36 1 6.8313 -3.6241 0.5026 37 1 3.9958 -3.9368 -2.0038 38 1 1.6408 -5.9743 -2.3732 39 1 3.1263 -5.6295 -3.3186 40 1 2.1227 -8.2486 -2.2180 41 1 3.1311 -7.9407 -3.6592 42 1 2.6602 -10.9590 -3.4468 43 1 5.4575 -6.3091 -1.8780 44 1 5.0862 -6.9333 -0.2416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015027425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:38 Heat of formation + Delta-G solvation = -29.426648 kcal Electronic energy + Delta-G solvation = -26856.293384 eV Core-core repulsion = 23001.819896 eV Total energy + Delta-G solvation = -3854.473488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38872 -40.63437 -40.29251 -38.74589 -35.81752 -35.54536 -33.75373 -32.48826 -31.90327 -30.94445 -29.99061 -28.78051 -27.06789 -26.33960 -23.80902 -23.08047 -22.06363 -21.69865 -20.87901 -20.36462 -19.25481 -18.88016 -17.60659 -17.29108 -17.01719 -16.78031 -16.63091 -16.44695 -16.00367 -15.61916 -15.44625 -15.23131 -14.76897 -14.44280 -14.16504 -14.01282 -13.86293 -13.72465 -13.57854 -13.56205 -13.38566 -13.06875 -12.94799 -12.78993 -12.73738 -12.38175 -12.11910 -12.02483 -11.88213 -11.79576 -11.55920 -11.08507 -10.89864 -10.70433 -10.07689 -9.34958 -8.89938 -8.71128 -7.84881 -5.20672 1.06189 1.13564 1.46734 1.48967 1.54136 1.57461 1.95809 2.04691 2.21446 2.50041 2.61905 3.33892 3.70500 3.77463 3.78109 3.84433 4.07341 4.08788 4.22315 4.25719 4.41192 4.53530 4.62364 4.66191 4.71172 4.75299 4.79043 4.90142 4.91629 4.94154 5.00380 5.10448 5.11689 5.20074 5.44299 5.55467 5.66537 5.75829 5.80140 5.92612 6.20219 6.46452 6.61226 6.67237 7.10888 7.12649 7.28546 7.76561 8.39875 9.25147 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.002856 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.287046 B = 9802.216424 C =10823.754704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.573 6.573 4 N -0.640 5.640 5 C 0.073 3.927 6 C -0.031 4.031 7 N -0.526 5.526 8 H 0.437 0.563 9 C 0.100 3.900 10 C -0.093 4.093 11 C -0.267 4.267 12 C 0.600 3.400 13 O -0.582 6.582 14 N -0.691 5.691 15 C 0.145 3.855 16 H 0.077 0.923 17 C -0.127 4.127 18 C 0.184 3.816 19 N -0.626 5.626 20 C -0.245 4.245 21 H 0.078 0.922 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.978 3.022 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.129 3.871 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.418 0.582 33 H 0.191 0.809 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.248 0.752 43 H 0.033 0.967 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 24.026 2.701 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.453 6.453 4 N -0.283 5.283 5 C -0.027 4.027 6 C -0.161 4.161 7 N -0.124 5.124 8 H 0.278 0.722 9 C -0.020 4.020 10 C -0.151 4.151 11 C -0.279 4.279 12 C 0.387 3.613 13 O -0.461 6.461 14 N -0.341 5.341 15 C 0.039 3.961 16 H 0.096 0.904 17 C -0.166 4.166 18 C 0.059 3.941 19 N -0.353 5.353 20 C -0.374 4.374 21 H 0.096 0.904 22 C -0.256 4.256 23 N -0.597 5.597 24 Si 0.806 3.194 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.195 1.195 28 C 0.002 3.998 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.255 0.745 33 H 0.208 0.792 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.766 24.280 3.366 24.524 hybrid contribution 0.289 -1.369 -0.240 1.419 sum 1.055 22.911 3.126 23.148 Atomic orbital electron populations 1.21933 0.87158 1.06729 1.06488 1.21722 0.92423 0.81969 0.74405 1.90558 1.71283 1.32456 1.50995 1.43092 1.03376 1.10398 1.71435 1.18029 0.83245 0.92203 1.09269 1.22051 0.81897 0.99233 1.12936 1.41325 1.08314 1.05512 1.57250 0.72225 1.20554 0.95080 0.84099 1.02271 1.20543 0.91715 0.98247 1.04571 1.19815 0.93092 0.90455 1.24583 1.17636 0.75247 0.85382 0.83048 1.90792 1.52732 1.69564 1.33038 1.45839 1.68538 1.10864 1.08885 1.21849 0.95392 0.79962 0.98941 0.90448 1.22992 1.01095 0.96279 0.96207 1.20936 0.88193 0.90728 0.94218 1.44679 1.29579 1.02943 1.58070 1.19419 1.07610 0.84271 1.26111 0.90416 1.25626 0.98482 1.01530 0.99971 1.70157 1.22427 1.29519 1.37601 0.85083 0.78147 0.79425 0.76699 1.21415 1.21731 1.19481 1.21929 0.95331 0.86822 0.95671 0.87397 0.88163 0.86970 0.74533 0.79196 0.88554 0.88238 0.91668 0.74916 0.89089 0.89284 0.96787 0.96569 0.94263 0.94910 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.32 71.23 0.74 -0.83 16 2 C 0.50 9.58 7.91 87.66 0.69 10.28 16 3 O -0.57 -14.55 14.30 -3.11 -0.04 -14.59 16 4 N -0.64 -12.90 5.46 -299.23 -1.63 -14.53 16 5 C 0.07 1.74 7.22 39.31 0.28 2.03 16 6 C -0.03 -0.65 10.79 83.18 0.90 0.25 16 7 N -0.53 -8.25 5.90 -181.38 -1.07 -9.32 16 8 H 0.44 3.49 8.96 -92.70 -0.83 2.66 16 9 C 0.10 1.97 7.21 42.04 0.30 2.28 16 10 C -0.09 -1.45 10.25 71.24 0.73 -0.72 16 11 C -0.27 -6.76 6.09 -18.75 -0.11 -6.88 16 12 C 0.60 18.23 7.32 86.58 0.63 18.86 16 13 O -0.58 -23.09 16.75 -4.14 -0.07 -23.16 16 14 N -0.69 -18.84 5.19 -439.48 -2.28 -21.12 16 15 C 0.14 5.05 3.42 46.38 0.16 5.21 16 16 H 0.08 3.06 7.54 -2.39 -0.02 3.04 16 17 C -0.13 -4.26 6.60 31.78 0.21 -4.05 16 18 C 0.18 8.89 5.37 86.73 0.47 9.36 16 19 N -0.63 -32.63 3.39 -691.99 -2.35 -34.98 16 20 C -0.25 -14.04 10.28 84.03 0.86 -13.17 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 23 N -0.95 -56.76 10.31 21.65 0.22 -56.53 16 24 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 C 0.13 5.48 6.93 86.85 0.60 6.08 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 31 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.42 7.32 8.83 -92.71 -0.82 6.51 16 33 H 0.19 4.14 5.86 -2.91 -0.02 4.12 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 37 H 0.41 8.98 8.55 -92.71 -0.79 8.18 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.09 2.53 8.00 -2.38 -0.02 2.52 16 40 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 41 H 0.02 0.86 7.51 -2.39 -0.02 0.84 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.55 369.21 0.35 -80.20 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -1.38 Total: 20.33 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 6.93 Total: 25.55 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -7.11 Total: -136.48 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.11 Total: -37.75 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -80.55 0.35 -80.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015027425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.769 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds