Wall clock time and date at job start Tue Mar 31 2020 12:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99885 * 2 1 4 4 H 1.48499 * 109.46967 * 239.99363 * 3 2 1 5 5 H 1.48490 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46744 * 119.99988 * 3 2 1 7 7 C 1.38815 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99640 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.65088 * 0.04266 * 9 7 2 11 11 C 1.54907 * 104.83524 * 204.09015 * 10 9 7 12 12 C 1.55155 * 101.58383 * 322.99460 * 11 10 9 13 13 H 1.08998 * 110.71769 * 277.13840 * 12 11 10 14 14 N 1.46495 * 110.72438 * 153.86514 * 12 11 10 15 15 C 1.34778 * 120.00419 * 160.02675 * 14 12 11 16 16 O 1.21604 * 119.99457 * 359.97438 * 15 14 12 17 17 C 1.47422 * 120.00109 * 179.97438 * 15 14 12 18 18 C 1.38046 * 126.41656 * 359.68197 * 17 15 14 19 19 N 1.34258 * 107.41791 * 179.87027 * 18 17 15 20 20 H 0.97005 * 125.75800 * 180.10789 * 19 18 17 21 21 N 1.39938 * 108.49400 * 0.39951 * 19 18 17 22 22 C 1.30453 * 108.89366 * 359.74684 * 21 19 18 23 23 C 1.50699 * 125.98670 * 180.02562 * 22 21 19 24 24 H 1.09002 * 110.43621 * 180.70227 * 23 22 21 25 25 C 1.54807 * 110.49069 * 58.15548 * 23 22 21 26 26 C 1.55223 * 101.98706 * 220.51740 * 25 23 22 27 27 O 1.44387 * 103.56635 * 36.88063 * 26 25 23 28 28 C 1.43745 * 106.97145 * 320.01021 * 27 26 25 29 29 C 1.47026 * 125.64483 * 180.02562 * 9 7 2 30 30 H 0.97003 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36858 * 322.93245 * 10 9 7 32 32 H 1.08999 * 110.36307 * 85.25460 * 10 9 7 33 33 H 1.09001 * 111.00336 * 81.06484 * 11 10 9 34 34 H 1.09000 * 111.00618 * 204.91301 * 11 10 9 35 35 H 0.97005 * 119.99930 * 340.01546 * 14 12 11 36 36 H 1.08001 * 126.28777 * 0.02562 * 18 17 15 37 37 H 1.09004 * 110.90741 * 338.63844 * 25 23 22 38 38 H 1.08999 * 110.90979 * 102.23980 * 25 23 22 39 39 H 1.08994 * 110.52360 * 278.38772 * 26 25 23 40 40 H 1.09007 * 110.77998 * 155.49740 * 26 25 23 41 41 H 1.09001 * 109.87822 * 267.08661 * 28 27 26 42 42 H 1.09001 * 109.87363 * 145.93677 * 28 27 26 43 43 H 1.08998 * 109.88351 * 298.39204 * 29 9 7 44 44 H 1.08998 * 109.88379 * 59.55994 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1038 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0009 11 6 -0.4024 -3.9322 0.6109 12 6 0.7782 -4.7525 0.0272 13 1 0.5467 -5.0982 -0.9802 14 7 1.1074 -5.8812 0.9012 15 6 1.8001 -6.9302 0.4152 16 8 2.1514 -6.9400 -0.7490 17 6 2.1318 -8.0658 1.2948 18 6 1.8066 -8.1899 2.6307 19 7 2.2902 -9.3685 3.0543 20 1 2.2098 -9.7241 3.9532 21 7 2.9357 -9.9946 1.9821 22 6 2.8475 -9.2282 0.9301 23 6 3.4099 -9.5300 -0.4350 24 1 3.2005 -8.7105 -1.1226 25 6 2.8273 -10.8567 -0.9799 26 6 4.0716 -11.5074 -1.6417 27 8 5.1536 -11.1468 -0.7563 28 6 4.9268 -9.7872 -0.3487 29 6 1.9317 -3.7275 0.0016 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6000 -1.7588 0.6141 32 1 -0.5263 -2.4870 -1.0197 33 1 -0.3538 -3.8979 1.6993 34 1 -1.3594 -4.3327 0.2766 35 1 0.8270 -5.8734 1.8298 36 1 1.2609 -7.4719 3.2251 37 1 2.4493 -11.4780 -0.1680 38 1 2.0475 -10.6654 -1.7170 39 1 4.2356 -11.0935 -2.6365 40 1 3.9611 -12.5907 -1.6913 41 1 5.4567 -9.1070 -1.0156 42 1 5.2689 -9.6457 0.6765 43 1 2.5293 -3.8647 -0.8996 44 1 2.5570 -3.8507 0.8859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015404723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:04 Heat of formation + Delta-G solvation = 21.615053 kcal Electronic energy + Delta-G solvation = -26880.924137 eV Core-core repulsion = 23028.663983 eV Total energy + Delta-G solvation = -3852.260154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75521 -39.27974 -39.19950 -37.11711 -34.15828 -33.55786 -32.04686 -30.85505 -30.48866 -29.12313 -28.99233 -27.00588 -24.61715 -23.59399 -23.12126 -22.40308 -20.56775 -20.52022 -19.67340 -19.52163 -18.54253 -16.96518 -16.48758 -16.40247 -16.23810 -15.74408 -15.27279 -15.15012 -14.70000 -14.51745 -14.12096 -13.84350 -13.75177 -13.64586 -13.08662 -12.94826 -12.41371 -12.03085 -11.93730 -11.70923 -11.62216 -11.53478 -11.16504 -11.10620 -11.02408 -10.90846 -10.78389 -10.47868 -10.15374 -10.06896 -9.83077 -9.65620 -9.57053 -9.51814 -9.09310 -8.69208 -8.65616 -6.84482 -5.66587 -3.07904 1.28169 1.92261 2.39717 3.38467 3.41359 3.45099 3.46982 3.49740 3.80592 4.11895 4.35296 4.49777 4.54042 4.71299 4.79669 5.03628 5.07170 5.12171 5.20244 5.39356 5.44065 5.44553 5.52501 5.54949 5.59001 5.71613 5.78212 5.79249 5.81550 6.01247 6.13932 6.21187 6.38898 6.46529 6.55970 6.71333 6.77030 6.80141 7.02566 7.26186 7.46143 7.61135 7.73674 7.83478 8.33225 8.45735 9.21158 9.81781 10.45859 11.37618 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002672 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.424541 B =10478.436540 C =10971.282264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.134 3.866 13 H 0.092 0.908 14 N -0.713 5.713 15 C 0.591 3.409 16 O -0.541 6.541 17 C -0.279 4.279 18 C 0.104 3.896 19 N -0.461 5.461 20 H 0.444 0.556 21 N -0.290 5.290 22 C 0.142 3.858 23 C -0.058 4.058 24 H 0.133 0.867 25 C -0.142 4.142 26 C 0.047 3.953 27 O -0.377 6.377 28 C 0.060 3.940 29 C 0.129 3.871 30 H 0.253 0.747 31 H 0.110 0.890 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.187 0.813 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -21.522 5.474 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.189 4.189 12 C 0.029 3.971 13 H 0.110 0.890 14 N -0.363 5.363 15 C 0.377 3.623 16 O -0.419 6.419 17 C -0.294 4.294 18 C -0.049 4.049 19 N -0.166 5.166 20 H 0.289 0.711 21 N -0.112 5.112 22 C -0.026 4.026 23 C -0.078 4.078 24 H 0.151 0.849 25 C -0.181 4.181 26 C -0.029 4.029 27 O -0.296 6.296 28 C -0.017 4.017 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.204 0.796 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.884 -22.510 5.151 23.168 hybrid contribution -0.299 1.678 0.772 1.871 sum 1.585 -20.832 5.923 21.715 Atomic orbital electron populations 1.69755 1.04877 1.24915 1.57803 1.24777 0.95745 0.97693 1.02481 0.86134 0.78392 0.82949 0.77930 1.21170 1.21567 1.21199 1.19047 0.90534 0.82389 1.42924 0.90524 1.44446 1.01864 0.99700 1.87022 1.21937 0.84913 0.91858 0.98490 1.23323 0.96007 0.99210 1.00315 1.22088 0.96101 0.84707 0.94197 0.88988 1.45907 1.56844 1.19310 1.14252 1.17226 0.77491 0.80974 0.86560 1.90701 1.53828 1.80073 1.17346 1.20388 1.14595 1.00192 0.94193 1.23188 0.96889 0.89633 0.95198 1.46119 1.43156 1.14858 1.12432 0.71120 1.77180 1.18976 1.20688 0.94313 1.22056 0.95044 0.90755 0.94731 1.21409 0.94764 1.00809 0.90810 0.84914 1.23237 0.98658 0.95093 1.01101 1.23594 0.85302 1.00520 0.93514 1.88863 1.46987 1.28619 1.65099 1.23189 0.93673 0.83862 1.00983 1.21607 0.93958 0.85791 0.98451 0.93662 0.87223 0.96655 0.91755 0.91730 0.77224 0.79575 0.90187 0.89650 0.91881 0.88974 0.91474 0.89854 0.95424 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 10 C 0.15 3.60 5.89 -2.53 -0.01 3.58 16 11 C -0.15 -2.60 6.69 -24.58 -0.16 -2.76 16 12 C 0.13 2.33 3.23 -66.10 -0.21 2.12 16 13 H 0.09 1.71 7.70 -51.93 -0.40 1.31 16 14 N -0.71 -9.81 5.12 -53.11 -0.27 -10.08 16 15 C 0.59 8.69 7.81 -12.52 -0.10 8.60 16 16 O -0.54 -9.72 14.32 5.27 0.08 -9.65 16 17 C -0.28 -3.34 6.13 -105.07 -0.64 -3.99 16 18 C 0.10 0.83 11.52 -16.56 -0.19 0.64 16 19 N -0.46 -3.60 7.29 30.85 0.22 -3.38 16 20 H 0.44 1.82 8.96 -182.72 -1.64 0.18 16 21 N -0.29 -3.32 12.45 33.90 0.42 -2.90 16 22 C 0.14 1.76 5.55 -82.02 -0.46 1.31 16 23 C -0.06 -0.69 3.40 -90.25 -0.31 -1.00 16 24 H 0.13 1.80 5.69 -51.93 -0.30 1.51 16 25 C -0.14 -1.43 6.71 -24.60 -0.17 -1.60 16 26 C 0.05 0.45 7.72 38.34 0.30 0.74 16 27 O -0.38 -4.67 11.52 -35.23 -0.41 -5.08 16 28 C 0.06 0.72 7.36 37.73 0.28 0.99 16 29 C 0.13 2.78 6.99 -3.06 -0.02 2.76 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.39 4.13 7.44 -40.82 -0.30 3.82 16 36 H 0.19 0.75 7.46 -52.49 -0.39 0.36 16 37 H 0.08 0.84 7.74 -51.93 -0.40 0.44 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -34.62 357.52 -9.03 -43.65 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.47 Total: 2.40 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.95 Total: 4.65 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.36 Total: -58.34 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.33 Total: -14.72 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.62 -9.03 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015404723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.269 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds