Wall clock time and date at job start Tue Mar 31 2020 12:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99885 * 2 1 4 4 H 1.48499 * 109.46967 * 239.99363 * 3 2 1 5 5 H 1.48490 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46744 * 119.99988 * 3 2 1 7 7 C 1.38815 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99640 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.65088 * 0.04266 * 9 7 2 11 11 C 1.54907 * 104.83524 * 204.09015 * 10 9 7 12 12 C 1.55155 * 101.58383 * 322.99460 * 11 10 9 13 13 H 1.08998 * 110.71769 * 277.13840 * 12 11 10 14 14 N 1.46495 * 110.72438 * 153.86514 * 12 11 10 15 15 C 1.34778 * 120.00419 * 160.02675 * 14 12 11 16 16 O 1.21604 * 119.99457 * 359.97438 * 15 14 12 17 17 C 1.47422 * 120.00109 * 179.97438 * 15 14 12 18 18 C 1.38046 * 126.41656 * 359.68197 * 17 15 14 19 19 N 1.34258 * 107.41791 * 179.87027 * 18 17 15 20 20 H 0.97005 * 125.75800 * 180.10789 * 19 18 17 21 21 N 1.39938 * 108.49400 * 0.39951 * 19 18 17 22 22 C 1.30453 * 108.89366 * 359.74684 * 21 19 18 23 23 C 1.50699 * 125.98670 * 180.02562 * 22 21 19 24 24 H 1.09002 * 110.43621 * 180.70227 * 23 22 21 25 25 C 1.54807 * 110.49069 * 58.15548 * 23 22 21 26 26 C 1.55223 * 101.98706 * 220.51740 * 25 23 22 27 27 O 1.44387 * 103.56635 * 36.88063 * 26 25 23 28 28 C 1.43745 * 106.97145 * 320.01021 * 27 26 25 29 29 C 1.47026 * 125.64483 * 180.02562 * 9 7 2 30 30 H 0.97003 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36858 * 322.93245 * 10 9 7 32 32 H 1.08999 * 110.36307 * 85.25460 * 10 9 7 33 33 H 1.09001 * 111.00336 * 81.06484 * 11 10 9 34 34 H 1.09000 * 111.00618 * 204.91301 * 11 10 9 35 35 H 0.97005 * 119.99930 * 340.01546 * 14 12 11 36 36 H 1.08001 * 126.28777 * 0.02562 * 18 17 15 37 37 H 1.09004 * 110.90741 * 338.63844 * 25 23 22 38 38 H 1.08999 * 110.90979 * 102.23980 * 25 23 22 39 39 H 1.08994 * 110.52360 * 278.38772 * 26 25 23 40 40 H 1.09007 * 110.77998 * 155.49740 * 26 25 23 41 41 H 1.09001 * 109.87822 * 267.08661 * 28 27 26 42 42 H 1.09001 * 109.87363 * 145.93677 * 28 27 26 43 43 H 1.08998 * 109.88351 * 298.39204 * 29 9 7 44 44 H 1.08998 * 109.88379 * 59.55994 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1038 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0009 11 6 -0.4024 -3.9322 0.6109 12 6 0.7782 -4.7525 0.0272 13 1 0.5467 -5.0982 -0.9802 14 7 1.1074 -5.8812 0.9012 15 6 1.8001 -6.9302 0.4152 16 8 2.1514 -6.9400 -0.7490 17 6 2.1318 -8.0658 1.2948 18 6 1.8066 -8.1899 2.6307 19 7 2.2902 -9.3685 3.0543 20 1 2.2098 -9.7241 3.9532 21 7 2.9357 -9.9946 1.9821 22 6 2.8475 -9.2282 0.9301 23 6 3.4099 -9.5300 -0.4350 24 1 3.2005 -8.7105 -1.1226 25 6 2.8273 -10.8567 -0.9799 26 6 4.0716 -11.5074 -1.6417 27 8 5.1536 -11.1468 -0.7563 28 6 4.9268 -9.7872 -0.3487 29 6 1.9317 -3.7275 0.0016 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6000 -1.7588 0.6141 32 1 -0.5263 -2.4870 -1.0197 33 1 -0.3538 -3.8979 1.6993 34 1 -1.3594 -4.3327 0.2766 35 1 0.8270 -5.8734 1.8298 36 1 1.2609 -7.4719 3.2251 37 1 2.4493 -11.4780 -0.1680 38 1 2.0475 -10.6654 -1.7170 39 1 4.2356 -11.0935 -2.6365 40 1 3.9611 -12.5907 -1.6913 41 1 5.4567 -9.1070 -1.0156 42 1 5.2689 -9.6457 0.6765 43 1 2.5293 -3.8647 -0.8996 44 1 2.5570 -3.8507 0.8859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015404723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:03 Heat of formation + Delta-G solvation = -4.564725 kcal Electronic energy + Delta-G solvation = -26882.059378 eV Core-core repulsion = 23028.663983 eV Total energy + Delta-G solvation = -3853.395394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56509 -40.48988 -40.10614 -38.70372 -35.62122 -34.49669 -33.77511 -31.74830 -31.55107 -30.73290 -29.87280 -28.64879 -26.47864 -24.43490 -24.17756 -23.24348 -22.22429 -21.79766 -20.98729 -20.42941 -19.48144 -18.82592 -17.60633 -17.30015 -17.12047 -17.07156 -16.58598 -16.24207 -16.01985 -15.94344 -15.42028 -15.11131 -14.75244 -14.56845 -14.50039 -14.17336 -13.79491 -13.68307 -13.43623 -13.00189 -12.85125 -12.69553 -12.57359 -12.44338 -12.33151 -12.17291 -12.04880 -11.95793 -11.85285 -11.80187 -11.38351 -10.89402 -10.75694 -10.73320 -10.39290 -10.15345 -9.75915 -8.89261 -7.77351 -5.21968 0.54587 1.00589 1.47699 1.50728 1.57108 1.76249 2.23865 2.44358 2.52237 2.97397 3.31983 3.32923 3.59758 3.69539 3.76163 3.81198 3.96854 4.07310 4.09951 4.20922 4.27956 4.29629 4.37554 4.40515 4.61678 4.64573 4.72913 4.79656 4.83017 4.85773 4.95743 4.97427 5.06115 5.09830 5.16445 5.29834 5.46138 5.60444 5.65707 5.80661 5.86875 6.25570 6.32023 6.46964 6.72476 7.11736 7.36865 7.77663 8.40475 9.23993 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002672 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.424541 B =10478.436540 C =10971.282264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.624 5.624 10 C 0.151 3.849 11 C -0.125 4.125 12 C 0.153 3.847 13 H 0.079 0.921 14 N -0.699 5.699 15 C 0.591 3.409 16 O -0.582 6.582 17 C -0.315 4.315 18 C 0.140 3.860 19 N -0.443 5.443 20 H 0.462 0.538 21 N -0.312 5.312 22 C 0.131 3.869 23 C -0.061 4.061 24 H 0.112 0.888 25 C -0.136 4.136 26 C 0.045 3.955 27 O -0.395 6.395 28 C 0.064 3.936 29 C 0.129 3.871 30 H 0.249 0.751 31 H 0.082 0.918 32 H -0.013 1.013 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.235 0.765 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.004 0.996 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -22.718 7.580 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.350 5.350 10 C 0.026 3.974 11 C -0.164 4.164 12 C 0.047 3.953 13 H 0.097 0.903 14 N -0.350 5.350 15 C 0.380 3.620 16 O -0.463 6.463 17 C -0.330 4.330 18 C -0.014 4.014 19 N -0.149 5.149 20 H 0.311 0.689 21 N -0.134 5.134 22 C -0.037 4.037 23 C -0.081 4.081 24 H 0.130 0.870 25 C -0.174 4.174 26 C -0.031 4.031 27 O -0.315 6.315 28 C -0.014 4.014 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.005 0.995 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.022 0.978 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.362 -23.766 7.316 24.904 hybrid contribution -0.112 2.009 0.141 2.017 sum 1.250 -21.757 7.457 23.033 Atomic orbital electron populations 1.69995 1.06000 1.25257 1.58272 1.25584 0.96695 1.00740 1.02444 0.85139 0.77192 0.78810 0.78096 1.20920 1.21564 1.20134 1.19372 0.90880 0.83876 1.43119 0.90769 1.44731 1.02955 1.00465 1.86879 1.21785 0.83746 0.94973 0.96873 1.23116 0.97143 0.94903 1.01239 1.21606 0.94275 0.84825 0.94606 0.90262 1.45595 1.56797 1.17872 1.14778 1.17599 0.76570 0.81431 0.86365 1.90690 1.55348 1.80919 1.19355 1.20209 1.17393 0.99640 0.95732 1.23775 0.94375 0.89500 0.93773 1.46162 1.41581 1.14523 1.12631 0.68867 1.77132 1.20051 1.21356 0.94897 1.22091 0.95407 0.91254 0.94945 1.21320 0.94897 1.00919 0.90975 0.86973 1.23194 0.99025 0.94067 1.01109 1.23787 0.84188 1.01779 0.93370 1.88832 1.48152 1.28690 1.65791 1.23128 0.93822 0.83888 1.00564 1.21698 0.95308 0.85463 0.97349 0.94108 0.89969 0.99472 0.89471 0.88741 0.74837 0.74859 0.90497 0.88852 0.90955 0.86982 0.91489 0.90527 0.97780 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.29 10.09 21.65 0.22 -55.07 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 3 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.24 -13.85 10.27 84.03 0.86 -12.98 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.62 -32.38 3.39 -691.99 -2.35 -34.73 16 10 C 0.15 7.19 5.89 86.86 0.51 7.70 16 11 C -0.13 -4.09 6.69 31.98 0.21 -3.88 16 12 C 0.15 5.18 3.23 46.18 0.15 5.33 16 13 H 0.08 2.94 7.70 -2.39 -0.02 2.92 16 14 N -0.70 -17.57 5.12 -440.18 -2.25 -19.83 16 15 C 0.59 16.73 7.81 86.66 0.68 17.40 16 16 O -0.58 -21.26 14.32 -4.04 -0.06 -21.31 16 17 C -0.31 -6.93 6.13 -20.15 -0.12 -7.05 16 18 C 0.14 1.68 11.52 84.28 0.97 2.65 16 19 N -0.44 -5.37 7.29 -56.32 -0.41 -5.78 16 20 H 0.46 1.92 8.96 -213.42 -1.91 0.01 16 21 N -0.31 -6.59 12.45 -46.67 -0.58 -7.17 16 22 C 0.13 3.12 5.55 43.51 0.24 3.36 16 23 C -0.06 -1.47 3.40 -10.55 -0.04 -1.50 16 24 H 0.11 3.20 5.69 -2.39 -0.01 3.19 16 25 C -0.14 -2.67 6.71 31.97 0.21 -2.45 16 26 C 0.04 0.82 7.72 72.75 0.56 1.38 16 27 O -0.40 -9.72 11.52 -148.98 -1.72 -11.44 16 28 C 0.06 1.53 7.36 72.35 0.53 2.06 16 29 C 0.13 5.58 6.99 86.73 0.61 6.18 16 30 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.08 4.39 5.87 -2.39 -0.01 4.37 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.41 6.95 7.44 -92.70 -0.69 6.26 16 36 H 0.24 0.41 7.46 -2.91 -0.02 0.39 16 37 H 0.08 1.55 7.74 -2.38 -0.02 1.53 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.91 7.66 -2.39 -0.02 1.89 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 Total: -1.00 -78.69 357.52 -0.83 -79.51 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -1.55 Total: 13.13 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.85 Total: 15.16 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.38 Total: -122.58 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.77 Total: -32.76 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.69 -0.83 -79.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015404723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.950 kcal (2) G-P(sol) polarization free energy of solvation -78.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds