Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00411 * 2 1 4 4 H 1.48494 * 109.47031 * 240.00271 * 3 2 1 5 5 H 1.48500 * 109.46684 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47113 * 120.00094 * 3 2 1 7 7 C 1.38819 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64943 * 359.95734 * 9 7 2 11 11 C 1.54911 * 104.83404 * 204.16411 * 10 9 7 12 12 C 1.55166 * 101.57743 * 322.99194 * 11 10 9 13 13 H 1.08996 * 110.86888 * 153.93876 * 12 11 10 14 14 N 1.46499 * 110.71812 * 277.13546 * 12 11 10 15 15 C 1.34776 * 119.99865 * 199.97827 * 14 12 11 16 16 O 1.21608 * 120.00147 * 0.02562 * 15 14 12 17 17 C 1.47425 * 120.00134 * 180.02562 * 15 14 12 18 18 C 1.38044 * 126.41379 * 359.96866 * 17 15 14 19 19 N 1.34266 * 107.41888 * 180.02562 * 18 17 15 20 20 H 0.97001 * 125.75275 * 179.97438 * 19 18 17 21 21 N 1.39939 * 108.48792 * 0.25001 * 19 18 17 22 22 C 1.30449 * 108.89553 * 359.57838 * 21 19 18 23 23 C 1.50705 * 125.98448 * 180.12839 * 22 21 19 24 24 H 1.08993 * 110.74745 * 182.34867 * 23 22 21 25 25 C 1.55305 * 110.84702 * 306.04309 * 23 22 21 26 26 C 1.54952 * 100.93904 * 152.32458 * 25 23 22 27 27 O 1.43642 * 105.13664 * 323.55211 * 26 25 23 28 28 C 1.43246 * 109.97026 * 24.43150 * 27 26 25 29 29 C 1.47017 * 125.64602 * 179.97438 * 9 7 2 30 30 H 0.97007 * 119.99567 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.36940 * 323.00231 * 10 9 7 32 32 H 1.09006 * 110.36684 * 85.32910 * 10 9 7 33 33 H 1.08999 * 111.00365 * 204.92412 * 11 10 9 34 34 H 1.08993 * 111.00609 * 81.06423 * 11 10 9 35 35 H 0.97002 * 120.00343 * 19.98044 * 14 12 11 36 36 H 1.08001 * 126.29066 * 0.04993 * 18 17 15 37 37 H 1.08998 * 111.12484 * 270.24215 * 25 23 22 38 38 H 1.09000 * 111.12963 * 34.40891 * 25 23 22 39 39 H 1.09004 * 110.30968 * 204.64444 * 26 25 23 40 40 H 1.08998 * 110.39532 * 82.51516 * 26 25 23 41 41 H 1.09002 * 109.82910 * 238.77309 * 28 27 26 42 42 H 1.08998 * 109.83139 * 117.80267 * 28 27 26 43 43 H 1.09000 * 109.88747 * 59.48767 * 29 9 7 44 44 H 1.09001 * 109.88199 * 298.31871 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4012 -3.9321 0.6133 12 6 0.7783 -4.7524 0.0272 13 1 1.0257 -5.5937 0.6746 14 7 0.4644 -5.2172 -1.3261 15 6 1.1433 -6.2532 -1.8572 16 8 2.0161 -6.8026 -1.2128 17 6 0.8279 -6.7206 -3.2194 18 6 -0.1313 -6.1980 -4.0635 19 7 -0.0949 -6.9086 -5.2021 20 1 -0.6598 -6.7657 -5.9776 21 7 0.8909 -7.8941 -5.0788 22 6 1.4502 -7.7878 -3.9051 23 6 2.5607 -8.6556 -3.3715 24 1 2.8116 -8.3759 -2.3484 25 6 2.1792 -10.1584 -3.4606 26 6 3.5794 -10.8105 -3.5836 27 8 4.3480 -9.8999 -4.3858 28 6 3.8043 -8.5786 -4.2829 29 6 1.9316 -3.7275 -0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5988 -1.7587 0.6167 32 1 -0.5284 -2.4870 -1.0172 33 1 -1.3589 -4.3326 0.2807 34 1 -0.3506 -3.8978 1.7015 35 1 -0.2320 -4.7792 -1.8401 36 1 -0.7896 -5.3695 -3.8478 37 1 1.6701 -10.4888 -2.5552 38 1 1.5737 -10.3583 -4.3446 39 1 3.5036 -11.7789 -4.0783 40 1 4.0336 -10.9236 -2.5993 41 1 3.5170 -8.2191 -5.2710 42 1 4.5432 -7.9078 -3.8445 43 1 2.5593 -3.8511 0.8809 44 1 2.5268 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015404725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = 20.441929 kcal Electronic energy + Delta-G solvation = -27130.344069 eV Core-core repulsion = 23278.033044 eV Total energy + Delta-G solvation = -3852.311024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69803 -39.28202 -39.20718 -37.11560 -34.01699 -33.52587 -31.99632 -30.83622 -30.40061 -29.12813 -28.99950 -27.16310 -24.59264 -23.52245 -23.15935 -22.39867 -20.58243 -20.23819 -19.77276 -19.51154 -18.51943 -16.94335 -16.61741 -16.42406 -16.14707 -15.63528 -15.25645 -14.90996 -14.70623 -14.25665 -14.15004 -13.79422 -13.68091 -13.52804 -13.24140 -13.12246 -12.50533 -12.02421 -11.98080 -11.77275 -11.63218 -11.55697 -11.22850 -11.08615 -10.96011 -10.87589 -10.76978 -10.40118 -10.17125 -9.91431 -9.81542 -9.63965 -9.57169 -9.47403 -9.03998 -8.71799 -8.58157 -6.85988 -5.68860 -3.09306 1.34777 1.94831 2.44498 3.39185 3.43368 3.44490 3.46975 3.57043 3.75012 4.20340 4.39315 4.47725 4.51442 4.75167 4.85857 5.05530 5.13823 5.18442 5.24576 5.39082 5.43217 5.44633 5.50207 5.54843 5.65198 5.74328 5.75081 5.81377 5.85216 6.07911 6.18831 6.27144 6.35905 6.46655 6.56134 6.73996 6.82940 6.87540 7.06587 7.29426 7.38532 7.60131 7.77817 7.85497 8.32033 8.51790 9.19775 9.80452 10.44793 11.35452 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002902 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.229200 B = 9644.876299 C = 9853.896242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.153 4.153 12 C 0.133 3.867 13 H 0.089 0.911 14 N -0.707 5.707 15 C 0.592 3.408 16 O -0.547 6.547 17 C -0.278 4.278 18 C 0.107 3.893 19 N -0.460 5.460 20 H 0.444 0.556 21 N -0.294 5.294 22 C 0.143 3.857 23 C -0.055 4.055 24 H 0.134 0.866 25 C -0.145 4.145 26 C 0.052 3.948 27 O -0.384 6.384 28 C 0.064 3.936 29 C 0.127 3.873 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.009 0.991 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.189 0.811 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -17.495 -8.240 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.192 4.192 12 C 0.029 3.971 13 H 0.107 0.893 14 N -0.357 5.357 15 C 0.379 3.621 16 O -0.426 6.426 17 C -0.293 4.293 18 C -0.045 4.045 19 N -0.165 5.165 20 H 0.289 0.711 21 N -0.116 5.116 22 C -0.025 4.025 23 C -0.075 4.075 24 H 0.152 0.848 25 C -0.183 4.183 26 C -0.024 4.024 27 O -0.303 6.303 28 C -0.013 4.013 29 C 0.000 4.000 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.230 0.770 36 H 0.205 0.795 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.664 -18.327 -8.981 20.583 hybrid contribution -0.563 1.921 0.038 2.002 sum -3.227 -16.407 -8.943 18.962 Atomic orbital electron populations 1.69767 1.04851 1.24825 1.57992 1.24759 0.95741 0.97655 1.02563 0.86147 0.78405 0.82990 0.77950 1.21280 1.21606 1.21123 1.19059 0.90551 0.82465 1.42694 0.90558 1.44504 1.01780 0.99807 1.86887 1.21939 0.84990 0.92466 0.97894 1.23342 0.95816 0.99095 1.00982 1.21987 0.96796 0.96318 0.82024 0.89316 1.45820 1.39170 1.33169 1.17507 1.17174 0.81165 0.79485 0.84237 1.90680 1.32232 1.57730 1.61931 1.20365 1.05626 1.04907 0.98391 1.23236 0.98173 0.96553 0.86581 1.46081 1.30431 1.25247 1.14710 0.71069 1.77099 1.04472 1.10416 1.19585 1.21906 0.95808 0.94336 0.90416 1.21545 0.90598 0.92922 1.02472 0.84844 1.23328 0.98064 0.93278 1.03625 1.23369 0.89841 0.93551 0.95645 1.88388 1.54577 1.17970 1.69384 1.23166 0.93898 0.84936 0.99350 1.21697 0.93920 0.85785 0.98567 0.93751 0.87435 0.97315 0.91786 0.90552 0.76994 0.79450 0.89552 0.89913 0.89745 0.91808 0.91014 0.90719 0.95080 0.95532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.09 10.09 55.49 0.56 -25.53 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.03 3.39 -170.08 -0.58 -15.61 16 10 C 0.15 3.42 5.87 -2.53 -0.01 3.40 16 11 C -0.15 -2.63 6.64 -24.58 -0.16 -2.79 16 12 C 0.13 2.30 3.25 -66.09 -0.21 2.09 16 13 H 0.09 1.50 7.69 -51.93 -0.40 1.10 16 14 N -0.71 -10.57 5.10 -53.10 -0.27 -10.84 16 15 C 0.59 9.17 7.81 -12.52 -0.10 9.08 16 16 O -0.55 -9.91 14.33 5.27 0.08 -9.84 16 17 C -0.28 -3.60 6.13 -105.07 -0.64 -4.25 16 18 C 0.11 1.00 11.52 -16.56 -0.19 0.81 16 19 N -0.46 -4.01 7.29 30.85 0.22 -3.78 16 20 H 0.44 2.22 8.96 -182.72 -1.64 0.58 16 21 N -0.29 -3.49 12.27 33.90 0.42 -3.08 16 22 C 0.14 1.85 5.81 -82.02 -0.48 1.38 16 23 C -0.06 -0.68 3.35 -89.83 -0.30 -0.98 16 24 H 0.13 1.88 5.72 -51.93 -0.30 1.58 16 25 C -0.14 -1.47 6.60 -24.48 -0.16 -1.64 16 26 C 0.05 0.52 7.78 38.19 0.30 0.81 16 27 O -0.38 -4.94 11.36 -35.23 -0.40 -5.34 16 28 C 0.06 0.80 7.39 37.88 0.28 1.08 16 29 C 0.13 2.71 6.98 -3.07 -0.02 2.69 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.11 2.77 5.87 -51.93 -0.31 2.47 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.40 5.10 7.54 -40.82 -0.31 4.79 16 36 H 0.19 1.12 7.46 -52.49 -0.39 0.73 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.91 7.69 -51.93 -0.40 0.51 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -33.65 357.70 -9.06 -42.70 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.49 Total: 4.07 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.96 Total: 5.04 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.35 Total: -58.84 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.32 Total: -15.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.65 -9.06 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015404725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.147 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds