Wall clock time and date at job start Tue Mar 31 2020 12:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00411 * 2 1 4 4 H 1.48494 * 109.47031 * 240.00271 * 3 2 1 5 5 H 1.48500 * 109.46684 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47113 * 120.00094 * 3 2 1 7 7 C 1.38819 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64943 * 359.95734 * 9 7 2 11 11 C 1.54911 * 104.83404 * 204.16411 * 10 9 7 12 12 C 1.55166 * 101.57743 * 322.99194 * 11 10 9 13 13 H 1.08996 * 110.86888 * 153.93876 * 12 11 10 14 14 N 1.46499 * 110.71812 * 277.13546 * 12 11 10 15 15 C 1.34776 * 119.99865 * 199.97827 * 14 12 11 16 16 O 1.21608 * 120.00147 * 0.02562 * 15 14 12 17 17 C 1.47425 * 120.00134 * 180.02562 * 15 14 12 18 18 C 1.38044 * 126.41379 * 359.96866 * 17 15 14 19 19 N 1.34266 * 107.41888 * 180.02562 * 18 17 15 20 20 H 0.97001 * 125.75275 * 179.97438 * 19 18 17 21 21 N 1.39939 * 108.48792 * 0.25001 * 19 18 17 22 22 C 1.30449 * 108.89553 * 359.57838 * 21 19 18 23 23 C 1.50705 * 125.98448 * 180.12839 * 22 21 19 24 24 H 1.08993 * 110.74745 * 182.34867 * 23 22 21 25 25 C 1.55305 * 110.84702 * 306.04309 * 23 22 21 26 26 C 1.54952 * 100.93904 * 152.32458 * 25 23 22 27 27 O 1.43642 * 105.13664 * 323.55211 * 26 25 23 28 28 C 1.43246 * 109.97026 * 24.43150 * 27 26 25 29 29 C 1.47017 * 125.64602 * 179.97438 * 9 7 2 30 30 H 0.97007 * 119.99567 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.36940 * 323.00231 * 10 9 7 32 32 H 1.09006 * 110.36684 * 85.32910 * 10 9 7 33 33 H 1.08999 * 111.00365 * 204.92412 * 11 10 9 34 34 H 1.08993 * 111.00609 * 81.06423 * 11 10 9 35 35 H 0.97002 * 120.00343 * 19.98044 * 14 12 11 36 36 H 1.08001 * 126.29066 * 0.04993 * 18 17 15 37 37 H 1.08998 * 111.12484 * 270.24215 * 25 23 22 38 38 H 1.09000 * 111.12963 * 34.40891 * 25 23 22 39 39 H 1.09004 * 110.30968 * 204.64444 * 26 25 23 40 40 H 1.08998 * 110.39532 * 82.51516 * 26 25 23 41 41 H 1.09002 * 109.82910 * 238.77309 * 28 27 26 42 42 H 1.08998 * 109.83139 * 117.80267 * 28 27 26 43 43 H 1.09000 * 109.88747 * 59.48767 * 29 9 7 44 44 H 1.09001 * 109.88199 * 298.31871 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4012 -3.9321 0.6133 12 6 0.7783 -4.7524 0.0272 13 1 1.0257 -5.5937 0.6746 14 7 0.4644 -5.2172 -1.3261 15 6 1.1433 -6.2532 -1.8572 16 8 2.0161 -6.8026 -1.2128 17 6 0.8279 -6.7206 -3.2194 18 6 -0.1313 -6.1980 -4.0635 19 7 -0.0949 -6.9086 -5.2021 20 1 -0.6598 -6.7657 -5.9776 21 7 0.8909 -7.8941 -5.0788 22 6 1.4502 -7.7878 -3.9051 23 6 2.5607 -8.6556 -3.3715 24 1 2.8116 -8.3759 -2.3484 25 6 2.1792 -10.1584 -3.4606 26 6 3.5794 -10.8105 -3.5836 27 8 4.3480 -9.8999 -4.3858 28 6 3.8043 -8.5786 -4.2829 29 6 1.9316 -3.7275 -0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5988 -1.7587 0.6167 32 1 -0.5284 -2.4870 -1.0172 33 1 -1.3589 -4.3326 0.2807 34 1 -0.3506 -3.8978 1.7015 35 1 -0.2320 -4.7792 -1.8401 36 1 -0.7896 -5.3695 -3.8478 37 1 1.6701 -10.4888 -2.5552 38 1 1.5737 -10.3583 -4.3446 39 1 3.5036 -11.7789 -4.0783 40 1 4.0336 -10.9236 -2.5993 41 1 3.5170 -8.2191 -5.2710 42 1 4.5432 -7.9078 -3.8445 43 1 2.5593 -3.8511 0.8809 44 1 2.5268 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015404725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:09 Heat of formation + Delta-G solvation = -4.303325 kcal Electronic energy + Delta-G solvation = -27131.417103 eV Core-core repulsion = 23278.033044 eV Total energy + Delta-G solvation = -3853.384059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58017 -40.53979 -40.15294 -38.66271 -35.49359 -34.55628 -33.66874 -31.75967 -31.54940 -30.67165 -29.94451 -28.79119 -26.47234 -24.43404 -24.25306 -23.23810 -22.03996 -21.75516 -21.04224 -20.48944 -19.49650 -18.81536 -17.63930 -17.48953 -17.04759 -16.97291 -16.62746 -16.26543 -15.82358 -15.70311 -15.37728 -15.24815 -14.71686 -14.61240 -14.39080 -14.22463 -14.10626 -13.73480 -13.35795 -12.98431 -12.83611 -12.77006 -12.67949 -12.38706 -12.27733 -12.16162 -12.05051 -12.01611 -11.84787 -11.78996 -11.41773 -10.78016 -10.72191 -10.65358 -10.42951 -10.13208 -9.76295 -8.85794 -7.76410 -5.19079 0.51654 0.97142 1.47893 1.49733 1.56199 1.72762 2.28740 2.45257 2.51044 2.87487 3.32959 3.34533 3.55181 3.62840 3.74106 3.84778 3.98223 4.04054 4.13391 4.22013 4.26852 4.30981 4.36734 4.39301 4.57264 4.70718 4.71260 4.79329 4.83886 4.89437 4.92877 4.98335 5.08035 5.10299 5.17377 5.29970 5.46685 5.64761 5.69454 5.84538 5.96072 6.21525 6.35060 6.43681 6.71057 7.14494 7.35359 7.80463 8.43256 9.24586 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002902 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.229200 B = 9644.876299 C = 9853.896242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.059 4.059 3 Si 0.975 3.025 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.132 4.132 12 C 0.149 3.851 13 H 0.097 0.903 14 N -0.701 5.701 15 C 0.592 3.408 16 O -0.580 6.580 17 C -0.314 4.314 18 C 0.137 3.863 19 N -0.442 5.442 20 H 0.463 0.537 21 N -0.309 5.309 22 C 0.133 3.867 23 C -0.057 4.057 24 H 0.114 0.886 25 C -0.135 4.135 26 C 0.048 3.952 27 O -0.402 6.402 28 C 0.067 3.933 29 C 0.126 3.874 30 H 0.248 0.752 31 H 0.074 0.926 32 H 0.001 0.999 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.227 0.773 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 -18.194 -9.070 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.170 4.170 12 C 0.043 3.957 13 H 0.115 0.885 14 N -0.351 5.351 15 C 0.382 3.618 16 O -0.461 6.461 17 C -0.329 4.329 18 C -0.018 4.018 19 N -0.148 5.148 20 H 0.311 0.689 21 N -0.132 5.132 22 C -0.034 4.034 23 C -0.077 4.077 24 H 0.132 0.868 25 C -0.173 4.173 26 C -0.028 4.028 27 O -0.322 6.322 28 C -0.010 4.010 29 C -0.001 4.001 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.019 0.981 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.243 0.757 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -4.095 -19.054 -9.854 21.839 hybrid contribution -0.121 2.135 0.243 2.152 sum -4.216 -16.919 -9.611 19.910 Atomic orbital electron populations 1.69996 1.05758 1.25081 1.58370 1.25491 0.96677 1.00412 1.02616 0.85207 0.77250 0.79228 0.77953 1.20896 1.21537 1.20645 1.19336 0.90770 0.84051 1.42921 0.91172 1.44762 1.03052 1.00267 1.86771 1.21783 0.83463 0.94661 0.97161 1.23175 0.97464 0.95479 1.00926 1.21703 0.95069 0.95322 0.83559 0.88474 1.45666 1.39496 1.33147 1.16792 1.17511 0.80395 0.78968 0.84969 1.90665 1.33652 1.58797 1.63031 1.20252 1.08127 1.06499 0.97974 1.23703 0.96617 0.96048 0.85417 1.46126 1.29474 1.23979 1.15215 0.68857 1.77057 1.05383 1.11618 1.19135 1.21954 0.96060 0.94578 0.90829 1.21444 0.90703 0.94431 1.01171 0.86842 1.23283 0.98274 0.91696 1.04095 1.23578 0.89350 0.93800 0.96042 1.88358 1.55451 1.18315 1.70075 1.23083 0.93902 0.84971 0.99074 1.21782 0.95324 0.85667 0.97283 0.94199 0.90784 0.98075 0.87991 0.90163 0.75590 0.75677 0.88469 0.89925 0.87609 0.91073 0.91426 0.91473 0.95831 0.97276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.56 10.09 21.65 0.22 -53.34 16 2 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 3 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.24 -13.53 10.27 84.04 0.86 -12.66 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.62 -31.28 3.39 -692.00 -2.35 -33.62 16 10 C 0.15 6.86 5.87 86.86 0.51 7.37 16 11 C -0.13 -4.25 6.64 31.99 0.21 -4.03 16 12 C 0.15 4.95 3.25 46.18 0.15 5.10 16 13 H 0.10 3.14 7.69 -2.39 -0.02 3.12 16 14 N -0.70 -19.72 5.10 -440.17 -2.25 -21.97 16 15 C 0.59 17.82 7.81 86.66 0.68 18.50 16 16 O -0.58 -21.16 14.33 -4.06 -0.06 -21.22 16 17 C -0.31 -7.66 6.13 -20.15 -0.12 -7.78 16 18 C 0.14 2.13 11.52 84.27 0.97 3.10 16 19 N -0.44 -6.40 7.29 -56.31 -0.41 -6.81 16 20 H 0.46 3.02 8.96 -213.42 -1.91 1.11 16 21 N -0.31 -6.85 12.27 -46.67 -0.57 -7.42 16 22 C 0.13 3.34 5.81 43.52 0.25 3.59 16 23 C -0.06 -1.42 3.35 -10.28 -0.03 -1.45 16 24 H 0.11 3.31 5.72 -2.39 -0.01 3.29 16 25 C -0.14 -2.64 6.60 32.05 0.21 -2.43 16 26 C 0.05 0.91 7.78 72.65 0.56 1.47 16 27 O -0.40 -10.28 11.36 -148.98 -1.69 -11.97 16 28 C 0.07 1.71 7.39 72.45 0.54 2.25 16 29 C 0.13 5.41 6.98 86.73 0.61 6.01 16 30 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 31 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 32 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.41 9.40 7.54 -92.71 -0.70 8.70 16 36 H 0.23 1.65 7.46 -2.91 -0.02 1.63 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.62 7.86 -2.39 -0.02 1.60 16 39 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.01 0.43 8.04 -2.39 -0.02 0.41 16 Total: -1.00 -74.41 357.70 -0.78 -75.19 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -1.56 Total: 17.87 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.86 Total: 16.22 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.36 Total: -123.17 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.75 Total: -33.19 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.41 -0.78 -75.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015404725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.890 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds