Wall clock time and date at job start Tue Mar 31 2020 12:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48502 * 109.47099 * 274.98183 * 3 2 1 5 5 H 1.48508 * 109.47054 * 34.98556 * 3 2 1 6 6 H 1.48500 * 109.47083 * 154.98142 * 3 2 1 7 7 C 1.38818 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99966 * 187.05819 * 7 2 1 9 9 N 1.36935 * 119.99746 * 7.05763 * 7 2 1 10 10 C 1.47023 * 125.64968 * 354.79359 * 9 7 2 11 11 C 1.54325 * 107.26939 * 178.97092 * 10 9 7 12 12 C 1.55155 * 102.94423 * 337.80439 * 11 10 9 13 13 H 1.09002 * 111.00616 * 277.38862 * 12 11 10 14 14 N 1.46502 * 111.00306 * 153.57208 * 12 11 10 15 15 C 1.34777 * 119.99904 * 158.17856 * 14 12 11 16 16 O 1.21610 * 119.99950 * 0.02562 * 15 14 12 17 17 C 1.47426 * 120.00449 * 180.02562 * 15 14 12 18 18 C 1.38050 * 126.40796 * 0.02562 * 17 15 14 19 19 N 1.34261 * 107.41085 * 180.02562 * 18 17 15 20 20 H 0.97000 * 125.74867 * 179.97438 * 19 18 17 21 21 N 1.39932 * 108.49381 * 0.02562 * 19 18 17 22 22 C 1.30443 * 108.90038 * 359.97438 * 21 19 18 23 23 C 1.50700 * 125.99205 * 179.97438 * 22 21 19 24 24 H 1.08992 * 109.87205 * 164.30301 * 23 22 21 25 25 C 1.54103 * 109.87775 * 285.31273 * 23 22 21 26 26 C 1.54809 * 104.18937 * 121.45410 * 25 23 22 27 27 C 1.54992 * 102.09209 * 20.87516 * 26 25 23 28 28 O 1.43742 * 109.87701 * 43.29552 * 23 22 21 29 29 C 1.47473 * 125.62742 * 174.78572 * 9 7 2 30 30 H 0.97001 * 119.99635 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.88380 * 59.55291 * 10 9 7 32 32 H 1.08997 * 110.00973 * 298.46178 * 10 9 7 33 33 H 1.09001 * 110.71984 * 219.43852 * 11 10 9 34 34 H 1.09004 * 110.87012 * 96.24241 * 11 10 9 35 35 H 0.96996 * 120.00269 * 338.18959 * 14 12 11 36 36 H 1.07999 * 126.29304 * 359.74564 * 18 17 15 37 37 H 1.09003 * 110.48698 * 240.12700 * 25 23 22 38 38 H 1.08996 * 110.49243 * 2.63848 * 25 23 22 39 39 H 1.08995 * 110.91083 * 139.07374 * 26 25 23 40 40 H 1.08997 * 110.90506 * 262.68063 * 26 25 23 41 41 H 1.09006 * 110.62072 * 81.47761 * 27 26 25 42 42 H 1.09003 * 110.62349 * 204.31816 * 27 26 25 43 43 H 1.08999 * 110.34558 * 85.25375 * 29 9 7 44 44 H 1.08996 * 110.40608 * 322.92239 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3333 -2.3836 -0.1446 10 6 -0.1283 -2.5324 -0.2013 11 6 -0.4288 -4.0334 -0.3968 12 6 0.8911 -4.5756 -1.0061 13 1 0.9255 -4.4013 -2.0815 14 7 1.0645 -5.9981 -0.7017 15 6 1.8714 -6.7579 -1.4686 16 8 2.4559 -6.2625 -2.4130 17 6 2.0456 -8.1895 -1.1627 18 6 1.4497 -8.8851 -0.1298 19 7 1.8726 -10.1571 -0.2055 20 1 1.6175 -10.8757 0.3940 21 7 2.7443 -10.2710 -1.2942 22 6 2.8543 -9.1062 -1.8711 23 6 3.6971 -8.7930 -3.0805 24 1 3.3922 -7.8375 -3.5071 25 6 5.1848 -8.7384 -2.6825 26 6 5.8554 -9.8133 -3.5722 27 6 4.8295 -9.9678 -4.7237 28 8 3.5518 -9.8345 -4.0605 29 6 1.9501 -3.7173 -0.2702 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5267 -1.9622 -1.0404 32 1 -0.5751 -2.1830 0.7295 33 1 -1.2592 -4.1735 -1.0888 34 1 -0.6391 -4.5149 0.5583 35 1 0.5985 -6.3932 0.0517 36 1 0.7718 -8.4795 0.6067 37 1 5.6007 -7.7535 -2.8952 38 1 5.3068 -8.9831 -1.6274 39 1 6.8150 -9.4616 -3.9508 40 1 5.9732 -10.7503 -3.0280 41 1 4.9602 -9.1774 -5.4629 42 1 4.9219 -10.9480 -5.1913 43 1 2.1573 -4.1334 0.7157 44 1 2.8660 -3.6586 -0.8582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015606146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:24 Heat of formation + Delta-G solvation = 21.565387 kcal Electronic energy + Delta-G solvation = -26914.279537 eV Core-core repulsion = 23062.017229 eV Total energy + Delta-G solvation = -3852.262308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68769 -39.24792 -39.16626 -37.09761 -34.03493 -32.74652 -32.05072 -32.01913 -30.46508 -29.09000 -28.77133 -27.00333 -24.57060 -23.72776 -23.07219 -21.80659 -20.72520 -20.38346 -19.87177 -19.73344 -18.51641 -16.93044 -16.47820 -16.40681 -16.17062 -15.62163 -15.23357 -15.16456 -14.61099 -14.36864 -14.06649 -13.86145 -13.72898 -13.54765 -13.04353 -12.84076 -12.40216 -12.20681 -11.89630 -11.81664 -11.78467 -11.43806 -11.12069 -10.97329 -10.93733 -10.87725 -10.72724 -10.36204 -10.08546 -10.02445 -9.88785 -9.80633 -9.70770 -9.44405 -9.06237 -8.65399 -8.55249 -6.82015 -5.71479 -3.03392 1.31563 1.93641 2.43402 3.39842 3.43614 3.47638 3.48926 3.50207 3.82280 4.18490 4.39009 4.52799 4.55918 4.67937 4.79679 4.97700 5.14525 5.16098 5.20363 5.36439 5.44461 5.46354 5.53542 5.61831 5.62628 5.73961 5.76980 5.82908 5.84915 5.98175 6.13170 6.22828 6.34441 6.43365 6.63002 6.72446 6.74211 6.83647 7.01675 7.31534 7.53011 7.60988 7.76488 7.84318 8.26100 8.48508 9.23067 9.83302 10.48688 11.40909 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.002805 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.343200 B = 9978.383439 C =10925.576107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.130 3.870 13 H 0.097 0.903 14 N -0.714 5.714 15 C 0.590 3.410 16 O -0.539 6.539 17 C -0.274 4.274 18 C 0.102 3.898 19 N -0.462 5.462 20 H 0.444 0.556 21 N -0.275 5.275 22 C 0.133 3.867 23 C 0.147 3.853 24 H 0.119 0.881 25 C -0.141 4.141 26 C -0.153 4.153 27 C 0.046 3.954 28 O -0.367 6.367 29 C 0.130 3.870 30 H 0.252 0.748 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.188 0.812 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.018 0.982 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -22.944 -1.356 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.025 3.975 13 H 0.115 0.885 14 N -0.363 5.363 15 C 0.377 3.623 16 O -0.417 6.417 17 C -0.289 4.289 18 C -0.050 4.050 19 N -0.167 5.167 20 H 0.288 0.712 21 N -0.098 5.098 22 C -0.036 4.036 23 C 0.088 3.912 24 H 0.137 0.863 25 C -0.180 4.180 26 C -0.190 4.190 27 C -0.030 4.030 28 O -0.286 6.286 29 C 0.002 3.998 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.205 0.795 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.036 0.964 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.556 -23.669 -2.090 24.194 hybrid contribution -0.180 1.220 1.055 1.623 sum 4.376 -22.449 -1.035 22.895 Atomic orbital electron populations 1.69960 1.04917 1.25063 1.56980 1.24819 0.95719 0.97658 1.02177 0.86112 0.78684 0.83527 0.77550 1.21553 1.21815 1.20625 1.19075 0.91201 0.82451 1.42780 0.90364 1.44402 1.01603 1.00944 1.86150 1.21143 0.84659 0.87698 1.01162 1.23172 0.95784 1.00280 0.99552 1.22301 0.96750 0.77644 1.00831 0.88500 1.45831 1.47790 1.10485 1.32226 1.17208 0.78852 0.84046 0.82185 1.90729 1.47778 1.73670 1.29539 1.20325 1.09775 0.96052 1.02773 1.23162 0.97939 0.85337 0.98584 1.46181 1.36200 1.09178 1.25170 0.71167 1.77221 1.11642 1.21582 0.99334 1.22231 0.95793 0.89593 0.95989 1.21417 0.92754 0.92725 0.84310 0.86331 1.22916 0.93552 1.00421 1.01084 1.23119 0.99224 0.99676 0.97012 1.23585 0.82539 1.02029 0.94894 1.88968 1.31948 1.56565 1.51083 1.21837 0.95063 0.86581 0.96296 0.93752 0.93106 0.93816 0.91594 0.92139 0.77347 0.79505 0.89557 0.90554 0.90039 0.90521 0.91815 0.89010 0.96413 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.36 55.49 0.57 -26.39 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.39 10.26 -15.06 -0.15 -6.55 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 9 N -0.60 -15.50 3.40 -170.04 -0.58 -16.08 16 10 C 0.18 4.23 5.38 -3.06 -0.02 4.21 16 11 C -0.15 -2.59 6.59 -24.90 -0.16 -2.76 16 12 C 0.13 2.30 3.37 -65.78 -0.22 2.08 16 13 H 0.10 1.92 7.63 -51.93 -0.40 1.52 16 14 N -0.71 -9.86 5.20 -52.80 -0.27 -10.14 16 15 C 0.59 8.97 7.81 -12.52 -0.10 8.87 16 16 O -0.54 -10.08 14.36 5.27 0.08 -10.00 16 17 C -0.27 -3.46 6.13 -105.07 -0.64 -4.11 16 18 C 0.10 0.85 11.52 -16.56 -0.19 0.66 16 19 N -0.46 -3.84 7.29 30.85 0.22 -3.62 16 20 H 0.44 1.94 8.96 -182.73 -1.64 0.30 16 21 N -0.28 -3.43 12.63 33.89 0.43 -3.01 16 22 C 0.13 1.80 5.94 -82.02 -0.49 1.32 16 23 C 0.15 1.99 3.69 -27.31 -0.10 1.88 16 24 H 0.12 1.81 5.93 -51.93 -0.31 1.50 16 25 C -0.14 -1.55 6.63 -25.20 -0.17 -1.72 16 26 C -0.15 -1.34 7.16 -24.73 -0.18 -1.52 16 27 C 0.05 0.44 7.72 38.21 0.29 0.74 16 28 O -0.37 -5.00 11.19 -35.23 -0.39 -5.40 16 29 C 0.13 2.76 6.93 -2.50 -0.02 2.74 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 1.34 7.30 -51.93 -0.38 0.96 16 32 H 0.04 1.13 7.61 -51.93 -0.40 0.74 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 35 H 0.39 4.01 7.46 -40.82 -0.30 3.71 16 36 H 0.19 0.74 7.46 -52.49 -0.39 0.35 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -35.75 359.24 -9.35 -45.10 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.55 Total: 1.37 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.24 Total: 5.54 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.38 Total: -59.23 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.32 Total: -15.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.75 -9.35 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015606146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.668 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds