Wall clock time and date at job start Tue Mar 31 2020 12:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48502 * 109.47099 * 274.98183 * 3 2 1 5 5 H 1.48508 * 109.47054 * 34.98556 * 3 2 1 6 6 H 1.48500 * 109.47083 * 154.98142 * 3 2 1 7 7 C 1.38818 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99966 * 187.05819 * 7 2 1 9 9 N 1.36935 * 119.99746 * 7.05763 * 7 2 1 10 10 C 1.47023 * 125.64968 * 354.79359 * 9 7 2 11 11 C 1.54325 * 107.26939 * 178.97092 * 10 9 7 12 12 C 1.55155 * 102.94423 * 337.80439 * 11 10 9 13 13 H 1.09002 * 111.00616 * 277.38862 * 12 11 10 14 14 N 1.46502 * 111.00306 * 153.57208 * 12 11 10 15 15 C 1.34777 * 119.99904 * 158.17856 * 14 12 11 16 16 O 1.21610 * 119.99950 * 0.02562 * 15 14 12 17 17 C 1.47426 * 120.00449 * 180.02562 * 15 14 12 18 18 C 1.38050 * 126.40796 * 0.02562 * 17 15 14 19 19 N 1.34261 * 107.41085 * 180.02562 * 18 17 15 20 20 H 0.97000 * 125.74867 * 179.97438 * 19 18 17 21 21 N 1.39932 * 108.49381 * 0.02562 * 19 18 17 22 22 C 1.30443 * 108.90038 * 359.97438 * 21 19 18 23 23 C 1.50700 * 125.99205 * 179.97438 * 22 21 19 24 24 H 1.08992 * 109.87205 * 164.30301 * 23 22 21 25 25 C 1.54103 * 109.87775 * 285.31273 * 23 22 21 26 26 C 1.54809 * 104.18937 * 121.45410 * 25 23 22 27 27 C 1.54992 * 102.09209 * 20.87516 * 26 25 23 28 28 O 1.43742 * 109.87701 * 43.29552 * 23 22 21 29 29 C 1.47473 * 125.62742 * 174.78572 * 9 7 2 30 30 H 0.97001 * 119.99635 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.88380 * 59.55291 * 10 9 7 32 32 H 1.08997 * 110.00973 * 298.46178 * 10 9 7 33 33 H 1.09001 * 110.71984 * 219.43852 * 11 10 9 34 34 H 1.09004 * 110.87012 * 96.24241 * 11 10 9 35 35 H 0.96996 * 120.00269 * 338.18959 * 14 12 11 36 36 H 1.07999 * 126.29304 * 359.74564 * 18 17 15 37 37 H 1.09003 * 110.48698 * 240.12700 * 25 23 22 38 38 H 1.08996 * 110.49243 * 2.63848 * 25 23 22 39 39 H 1.08995 * 110.91083 * 139.07374 * 26 25 23 40 40 H 1.08997 * 110.90506 * 262.68063 * 26 25 23 41 41 H 1.09006 * 110.62072 * 81.47761 * 27 26 25 42 42 H 1.09003 * 110.62349 * 204.31816 * 27 26 25 43 43 H 1.08999 * 110.34558 * 85.25375 * 29 9 7 44 44 H 1.08996 * 110.40608 * 322.92239 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3333 -2.3836 -0.1446 10 6 -0.1283 -2.5324 -0.2013 11 6 -0.4288 -4.0334 -0.3968 12 6 0.8911 -4.5756 -1.0061 13 1 0.9255 -4.4013 -2.0815 14 7 1.0645 -5.9981 -0.7017 15 6 1.8714 -6.7579 -1.4686 16 8 2.4559 -6.2625 -2.4130 17 6 2.0456 -8.1895 -1.1627 18 6 1.4497 -8.8851 -0.1298 19 7 1.8726 -10.1571 -0.2055 20 1 1.6175 -10.8757 0.3940 21 7 2.7443 -10.2710 -1.2942 22 6 2.8543 -9.1062 -1.8711 23 6 3.6971 -8.7930 -3.0805 24 1 3.3922 -7.8375 -3.5071 25 6 5.1848 -8.7384 -2.6825 26 6 5.8554 -9.8133 -3.5722 27 6 4.8295 -9.9678 -4.7237 28 8 3.5518 -9.8345 -4.0605 29 6 1.9501 -3.7173 -0.2702 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5267 -1.9622 -1.0404 32 1 -0.5751 -2.1830 0.7295 33 1 -1.2592 -4.1735 -1.0888 34 1 -0.6391 -4.5149 0.5583 35 1 0.5985 -6.3932 0.0517 36 1 0.7718 -8.4795 0.6067 37 1 5.6007 -7.7535 -2.8952 38 1 5.3068 -8.9831 -1.6274 39 1 6.8150 -9.4616 -3.9508 40 1 5.9732 -10.7503 -3.0280 41 1 4.9602 -9.1774 -5.4629 42 1 4.9219 -10.9480 -5.1913 43 1 2.1573 -4.1334 0.7157 44 1 2.8660 -3.6586 -0.8582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015606146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:23 Heat of formation + Delta-G solvation = -6.001678 kcal Electronic energy + Delta-G solvation = -26915.474934 eV Core-core repulsion = 23062.017229 eV Total energy + Delta-G solvation = -3853.457705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54360 -40.47156 -40.10849 -38.71265 -35.58969 -33.82259 -33.61052 -32.87473 -31.64235 -30.74107 -29.65006 -28.64927 -26.46366 -24.56165 -24.18905 -22.58946 -22.12802 -21.95757 -21.16402 -20.77403 -19.49330 -18.80017 -17.63052 -17.29143 -17.04790 -16.97006 -16.59566 -16.21001 -16.12621 -15.85499 -15.36207 -15.15164 -14.56287 -14.55672 -14.39621 -14.11481 -13.90825 -13.83836 -13.63136 -12.93680 -12.77911 -12.71255 -12.67460 -12.33093 -12.21344 -12.08703 -12.01225 -12.00039 -11.80281 -11.68396 -11.53021 -11.03509 -10.76750 -10.67788 -10.46679 -10.14860 -9.76648 -8.88808 -7.86284 -5.20323 0.54476 0.96294 1.46323 1.49094 1.57303 1.76008 2.21701 2.39996 2.52530 2.97399 3.32361 3.34230 3.61229 3.71953 3.74224 3.85178 3.98209 4.02201 4.11475 4.18306 4.26215 4.34060 4.37808 4.41551 4.62401 4.66524 4.78368 4.79802 4.88384 4.91353 4.94243 5.01511 5.04273 5.13221 5.16994 5.24636 5.44981 5.60641 5.68079 5.77052 5.86499 6.20895 6.26311 6.46870 6.72869 7.11231 7.37245 7.77157 8.40680 9.24309 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.002805 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.343200 B = 9978.383439 C =10925.576107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.182 3.818 11 C -0.126 4.126 12 C 0.149 3.851 13 H 0.072 0.928 14 N -0.696 5.696 15 C 0.591 3.409 16 O -0.584 6.584 17 C -0.312 4.312 18 C 0.143 3.857 19 N -0.443 5.443 20 H 0.463 0.537 21 N -0.300 5.300 22 C 0.116 3.884 23 C 0.143 3.857 24 H 0.091 0.909 25 C -0.139 4.139 26 C -0.143 4.143 27 C 0.038 3.962 28 O -0.391 6.391 29 C 0.129 3.871 30 H 0.248 0.752 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.416 0.584 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.033 0.967 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -25.119 0.136 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.353 5.353 10 C 0.057 3.943 11 C -0.165 4.165 12 C 0.043 3.957 13 H 0.091 0.909 14 N -0.348 5.348 15 C 0.380 3.620 16 O -0.465 6.465 17 C -0.327 4.327 18 C -0.011 4.011 19 N -0.149 5.149 20 H 0.312 0.688 21 N -0.123 5.123 22 C -0.052 4.052 23 C 0.083 3.917 24 H 0.108 0.892 25 C -0.178 4.178 26 C -0.180 4.180 27 C -0.038 4.038 28 O -0.311 6.311 29 C 0.002 3.998 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.254 0.746 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.051 0.949 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.412 -25.931 -0.562 26.310 hybrid contribution -0.128 1.815 0.612 1.920 sum 4.285 -24.116 0.050 24.493 Atomic orbital electron populations 1.70161 1.06135 1.25397 1.57813 1.25628 0.96660 1.00817 1.02362 0.85102 0.77906 0.79317 0.77275 1.21574 1.21722 1.19383 1.19412 0.91548 0.83980 1.42563 0.90517 1.44690 1.02753 1.01840 1.86048 1.20951 0.83466 0.91693 0.98175 1.22984 0.95961 0.95540 1.01987 1.21756 0.95558 0.79452 0.98948 0.90943 1.45472 1.47876 1.08485 1.32917 1.17582 0.77958 0.85105 0.81382 1.90718 1.49513 1.74739 1.31529 1.20160 1.12455 0.94716 1.05365 1.23813 0.95893 0.84368 0.97057 1.46216 1.34607 1.10028 1.24095 0.68777 1.77151 1.13153 1.21209 1.00804 1.22284 0.96304 0.90345 0.96277 1.21287 0.94199 0.91562 0.84638 0.89182 1.22887 0.92514 1.01122 1.01253 1.23102 0.99704 0.99071 0.96141 1.23840 0.81445 1.03339 0.95183 1.88928 1.34135 1.56461 1.51535 1.21946 0.95210 0.85606 0.97002 0.94228 0.96886 0.96568 0.89327 0.88525 0.74645 0.74278 0.89863 0.90934 0.87823 0.90135 0.91313 0.87100 0.94908 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.85 10.36 21.65 0.22 -56.62 16 2 C -0.06 -3.53 5.48 84.86 0.46 -3.07 16 3 Si 0.98 46.40 29.56 68.60 2.03 48.42 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.25 -14.17 10.26 84.04 0.86 -13.31 16 8 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 9 N -0.63 -32.75 3.40 -691.87 -2.35 -35.10 16 10 C 0.18 8.76 5.38 86.73 0.47 9.23 16 11 C -0.13 -4.13 6.59 31.78 0.21 -3.92 16 12 C 0.15 5.16 3.37 46.38 0.16 5.32 16 13 H 0.07 2.91 7.63 -2.39 -0.02 2.89 16 14 N -0.70 -17.58 5.20 -439.21 -2.29 -19.87 16 15 C 0.59 17.47 7.81 86.66 0.68 18.15 16 16 O -0.58 -22.59 14.36 -4.06 -0.06 -22.65 16 17 C -0.31 -7.34 6.13 -20.15 -0.12 -7.46 16 18 C 0.14 1.78 11.52 84.28 0.97 2.75 16 19 N -0.44 -5.77 7.29 -56.31 -0.41 -6.18 16 20 H 0.46 2.10 8.96 -213.43 -1.91 0.18 16 21 N -0.30 -6.99 12.63 -46.68 -0.59 -7.58 16 22 C 0.12 3.10 5.94 43.52 0.26 3.36 16 23 C 0.14 3.97 3.69 30.22 0.11 4.09 16 24 H 0.09 2.97 5.93 -2.39 -0.01 2.96 16 25 C -0.14 -3.11 6.63 31.58 0.21 -2.90 16 26 C -0.14 -2.38 7.16 31.89 0.23 -2.15 16 27 C 0.04 0.71 7.72 72.66 0.56 1.27 16 28 O -0.39 -10.86 11.19 -148.98 -1.67 -12.52 16 29 C 0.13 5.49 6.93 86.85 0.60 6.09 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.01 0.71 7.30 -2.39 -0.02 0.69 16 32 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 2.51 7.99 -2.38 -0.02 2.49 16 35 H 0.42 6.59 7.46 -92.71 -0.69 5.90 16 36 H 0.24 0.26 7.46 -2.91 -0.02 0.24 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -83.27 359.24 -1.01 -84.29 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -1.56 Total: 10.40 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.66 Total: 17.43 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.41 Total: -125.36 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.72 Total: -35.18 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -83.27 -1.01 -84.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015606146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.284 kcal (2) G-P(sol) polarization free energy of solvation -83.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds