Wall clock time and date at job start Tue Mar 31 2020 12:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48499 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47089 * 299.99904 * 3 2 1 6 6 H 1.48505 * 109.47171 * 59.99869 * 3 2 1 7 7 C 1.38810 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00328 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64867 * 0.04891 * 9 7 2 11 11 C 1.55383 * 104.87458 * 204.09651 * 10 9 7 12 12 C 1.55159 * 101.36584 * 323.01188 * 11 10 9 13 13 H 1.08991 * 110.72522 * 153.94765 * 12 11 10 14 14 N 1.46501 * 110.72010 * 277.04786 * 12 11 10 15 15 C 1.34779 * 120.00176 * 202.55367 * 14 12 11 16 16 O 1.21602 * 119.99548 * 0.02562 * 15 14 12 17 17 C 1.47421 * 120.00515 * 179.97438 * 15 14 12 18 18 C 1.38054 * 126.41174 * 359.97438 * 17 15 14 19 19 N 1.34258 * 107.41520 * 180.26178 * 18 17 15 20 20 H 0.96998 * 125.75372 * 179.73666 * 19 18 17 21 21 N 1.39935 * 108.49136 * 359.57809 * 19 18 17 22 22 C 1.30446 * 108.90003 * 0.43452 * 21 19 18 23 23 C 1.50697 * 125.99006 * 179.72464 * 22 21 19 24 24 H 1.09001 * 110.32736 * 197.26967 * 23 22 21 25 25 C 1.54483 * 110.37439 * 75.02293 * 23 22 21 26 26 C 1.54502 * 104.06299 * 217.19117 * 25 23 22 27 27 C 1.54484 * 104.06379 * 359.97438 * 26 25 23 28 28 O 1.44419 * 110.37378 * 319.63749 * 23 22 21 29 29 C 1.47024 * 125.64781 * 180.02562 * 9 7 2 30 30 H 0.96997 * 119.99847 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.36450 * 322.92967 * 10 9 7 32 32 H 1.08998 * 110.37012 * 85.13791 * 10 9 7 33 33 H 1.08999 * 111.19204 * 204.97945 * 11 10 9 34 34 H 1.08994 * 111.02745 * 80.97682 * 11 10 9 35 35 H 0.97000 * 120.00297 * 22.55457 * 14 12 11 36 36 H 1.08002 * 126.28891 * 359.97438 * 18 17 15 37 37 H 1.09004 * 110.50728 * 335.83433 * 25 23 22 38 38 H 1.09004 * 110.51167 * 98.40199 * 25 23 22 39 39 H 1.08992 * 110.51519 * 118.64128 * 26 25 23 40 40 H 1.09001 * 110.51098 * 241.21792 * 26 25 23 41 41 H 1.08995 * 110.37150 * 142.81199 * 27 26 25 42 42 H 1.09001 * 110.37097 * 265.04167 * 27 26 25 43 43 H 1.08998 * 109.88291 * 59.56213 * 29 9 7 44 44 H 1.08996 * 109.88255 * 298.39334 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0010 11 6 -0.4038 -3.9366 0.6123 12 6 0.7783 -4.7525 0.0254 13 1 1.0250 -5.5940 0.6726 14 7 0.4661 -5.2165 -1.3286 15 6 1.1120 -6.2825 -1.8414 16 8 1.9537 -6.8593 -1.1799 17 6 0.7975 -6.7498 -3.2038 18 6 -0.1294 -6.1986 -4.0656 19 7 -0.1085 -6.9236 -5.1954 20 1 -0.6600 -6.7691 -5.9783 21 7 0.8456 -7.9375 -5.0546 22 6 1.3883 -7.8457 -3.8719 23 6 2.4577 -8.7500 -3.3157 24 1 2.5115 -8.6506 -2.2315 25 6 3.8255 -8.4216 -3.9542 26 6 4.5052 -9.7997 -4.1153 27 6 3.4680 -10.7977 -3.5544 28 8 2.1980 -10.1219 -3.6847 29 6 1.9317 -3.7275 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5995 -1.7589 0.6147 32 1 -0.5273 -2.4845 -1.0193 33 1 -1.3602 -4.3397 0.2792 34 1 -0.3534 -3.9034 1.7006 35 1 -0.2056 -4.7566 -1.8562 36 1 -0.7593 -5.3443 -3.8658 37 1 3.6892 -7.9471 -4.9261 38 1 4.4103 -7.7796 -3.2955 39 1 4.7050 -10.0066 -5.1666 40 1 5.4283 -9.8402 -3.5370 41 1 3.4702 -11.7167 -4.1404 42 1 3.6787 -11.0156 -2.5074 43 1 2.5577 -3.8512 0.8832 44 1 2.5286 -3.8643 -0.9022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015606148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:31 Heat of formation + Delta-G solvation = 21.982727 kcal Electronic energy + Delta-G solvation = -27163.675468 eV Core-core repulsion = 23311.431258 eV Total energy + Delta-G solvation = -3852.244210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60689 -39.23018 -39.17810 -37.08294 -33.85729 -32.67703 -32.02548 -31.97374 -30.35906 -29.06598 -28.69092 -27.13166 -24.58579 -23.82923 -23.18104 -21.58254 -20.71302 -20.22174 -19.81602 -19.68545 -18.45627 -16.92901 -16.42439 -16.30663 -16.07292 -15.59570 -15.37408 -15.15017 -14.70302 -14.17503 -14.07519 -13.81118 -13.72758 -13.39018 -13.09828 -12.91769 -12.49738 -12.00526 -11.90226 -11.73085 -11.62432 -11.46490 -11.07852 -11.06665 -10.91588 -10.79358 -10.76048 -10.41338 -10.11307 -10.04907 -9.89229 -9.74258 -9.59266 -9.42835 -8.99824 -8.71472 -8.55714 -6.85366 -5.68643 -3.09158 1.40500 1.98777 2.51068 3.37771 3.44114 3.46268 3.50670 3.54352 3.85674 4.26070 4.47721 4.49376 4.63353 4.73655 4.83394 5.05712 5.20077 5.21467 5.28427 5.41195 5.43919 5.46106 5.51641 5.57473 5.66981 5.75622 5.76670 5.87099 5.88941 5.98714 6.18825 6.28091 6.36453 6.49110 6.57191 6.69799 6.74281 6.91481 7.08235 7.38249 7.40030 7.61198 7.79157 7.88008 8.32556 8.54015 9.20076 9.80715 10.45118 11.35682 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002934 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.866884 B = 9539.485293 C = 9787.839403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.154 4.154 12 C 0.133 3.867 13 H 0.090 0.910 14 N -0.707 5.707 15 C 0.593 3.407 16 O -0.548 6.548 17 C -0.275 4.275 18 C 0.106 3.894 19 N -0.461 5.461 20 H 0.444 0.556 21 N -0.275 5.275 22 C 0.136 3.864 23 C 0.148 3.852 24 H 0.118 0.882 25 C -0.142 4.142 26 C -0.152 4.152 27 C 0.045 3.955 28 O -0.366 6.366 29 C 0.127 3.873 30 H 0.251 0.749 31 H 0.108 0.892 32 H 0.009 0.991 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.190 0.810 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.031 0.969 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -16.950 -8.864 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.028 3.972 13 H 0.108 0.892 14 N -0.356 5.356 15 C 0.380 3.620 16 O -0.427 6.427 17 C -0.290 4.290 18 C -0.046 4.046 19 N -0.166 5.166 20 H 0.289 0.711 21 N -0.097 5.097 22 C -0.033 4.033 23 C 0.089 3.911 24 H 0.135 0.865 25 C -0.180 4.180 26 C -0.190 4.190 27 C -0.032 4.032 28 O -0.284 6.284 29 C 0.000 4.000 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.231 0.769 36 H 0.206 0.794 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.307 -17.869 -9.529 20.254 hybrid contribution -0.081 1.913 -0.101 1.917 sum 0.226 -15.956 -9.630 18.639 Atomic orbital electron populations 1.69788 1.04840 1.24590 1.58137 1.24763 0.95748 0.97664 1.02631 0.85999 0.78725 0.83605 0.77205 1.20536 1.21854 1.21745 1.19147 0.90590 0.82435 1.42418 0.90461 1.44522 1.01813 0.99822 1.86854 1.22021 0.84940 0.92423 0.97916 1.23421 0.95866 0.99093 1.00938 1.21987 0.96744 0.96394 0.82064 0.89205 1.45802 1.41838 1.30656 1.17335 1.17163 0.80807 0.79727 0.84315 1.90689 1.33621 1.57366 1.61039 1.20287 1.06793 1.03795 0.98137 1.23223 0.97966 0.96651 0.86771 1.46173 1.32030 1.23565 1.14865 0.71090 1.77217 1.05097 1.08403 1.18986 1.21954 0.96189 0.94559 0.90616 1.21587 0.89475 0.80029 1.00036 0.86455 1.22918 0.95158 0.97860 1.02087 1.22924 0.99199 0.94645 1.02266 1.23395 0.83094 0.96093 1.00608 1.89180 1.29790 1.20022 1.89432 1.21704 0.93940 0.85804 0.98533 0.93853 0.87463 0.97258 0.91725 0.90576 0.76938 0.79360 0.90707 0.89571 0.90711 0.90291 0.89120 0.91951 0.95072 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.02 3.40 -169.77 -0.58 -15.60 16 10 C 0.15 3.43 5.87 -2.27 -0.01 3.42 16 11 C -0.15 -2.68 6.69 -24.32 -0.16 -2.84 16 12 C 0.13 2.32 3.28 -66.09 -0.22 2.11 16 13 H 0.09 1.55 7.62 -51.93 -0.40 1.15 16 14 N -0.71 -10.82 5.09 -53.10 -0.27 -11.09 16 15 C 0.59 9.49 7.81 -12.52 -0.10 9.39 16 16 O -0.55 -10.15 14.39 5.28 0.08 -10.08 16 17 C -0.28 -3.81 6.13 -105.07 -0.64 -4.46 16 18 C 0.11 1.08 11.52 -16.56 -0.19 0.89 16 19 N -0.46 -4.49 7.29 30.85 0.22 -4.27 16 20 H 0.44 2.59 8.96 -182.72 -1.64 0.95 16 21 N -0.27 -3.73 12.62 33.89 0.43 -3.30 16 22 C 0.14 1.96 6.10 -82.02 -0.50 1.46 16 23 C 0.15 2.06 3.52 -27.11 -0.10 1.96 16 24 H 0.12 1.78 6.02 -51.93 -0.31 1.47 16 25 C -0.14 -1.66 6.62 -25.16 -0.17 -1.83 16 26 C -0.15 -1.40 7.09 -25.16 -0.18 -1.58 16 27 C 0.05 0.45 7.63 37.94 0.29 0.74 16 28 O -0.37 -5.09 11.32 -35.23 -0.40 -5.49 16 29 C 0.13 2.70 6.99 -3.06 -0.02 2.68 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.11 2.78 5.87 -51.93 -0.31 2.47 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.40 5.27 7.55 -40.82 -0.31 4.96 16 36 H 0.19 1.23 7.46 -52.49 -0.39 0.83 16 37 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -34.17 358.90 -9.35 -43.52 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.53 Total: 4.30 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.25 Total: 5.35 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.37 Total: -59.78 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.32 Total: -15.57 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.17 -9.35 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015606148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.505 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds