Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48499 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47089 * 299.99904 * 3 2 1 6 6 H 1.48505 * 109.47171 * 59.99869 * 3 2 1 7 7 C 1.38810 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00328 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64867 * 0.04891 * 9 7 2 11 11 C 1.55383 * 104.87458 * 204.09651 * 10 9 7 12 12 C 1.55159 * 101.36584 * 323.01188 * 11 10 9 13 13 H 1.08991 * 110.72522 * 153.94765 * 12 11 10 14 14 N 1.46501 * 110.72010 * 277.04786 * 12 11 10 15 15 C 1.34779 * 120.00176 * 202.55367 * 14 12 11 16 16 O 1.21602 * 119.99548 * 0.02562 * 15 14 12 17 17 C 1.47421 * 120.00515 * 179.97438 * 15 14 12 18 18 C 1.38054 * 126.41174 * 359.97438 * 17 15 14 19 19 N 1.34258 * 107.41520 * 180.26178 * 18 17 15 20 20 H 0.96998 * 125.75372 * 179.73666 * 19 18 17 21 21 N 1.39935 * 108.49136 * 359.57809 * 19 18 17 22 22 C 1.30446 * 108.90003 * 0.43452 * 21 19 18 23 23 C 1.50697 * 125.99006 * 179.72464 * 22 21 19 24 24 H 1.09001 * 110.32736 * 197.26967 * 23 22 21 25 25 C 1.54483 * 110.37439 * 75.02293 * 23 22 21 26 26 C 1.54502 * 104.06299 * 217.19117 * 25 23 22 27 27 C 1.54484 * 104.06379 * 359.97438 * 26 25 23 28 28 O 1.44419 * 110.37378 * 319.63749 * 23 22 21 29 29 C 1.47024 * 125.64781 * 180.02562 * 9 7 2 30 30 H 0.96997 * 119.99847 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.36450 * 322.92967 * 10 9 7 32 32 H 1.08998 * 110.37012 * 85.13791 * 10 9 7 33 33 H 1.08999 * 111.19204 * 204.97945 * 11 10 9 34 34 H 1.08994 * 111.02745 * 80.97682 * 11 10 9 35 35 H 0.97000 * 120.00297 * 22.55457 * 14 12 11 36 36 H 1.08002 * 126.28891 * 359.97438 * 18 17 15 37 37 H 1.09004 * 110.50728 * 335.83433 * 25 23 22 38 38 H 1.09004 * 110.51167 * 98.40199 * 25 23 22 39 39 H 1.08992 * 110.51519 * 118.64128 * 26 25 23 40 40 H 1.09001 * 110.51098 * 241.21792 * 26 25 23 41 41 H 1.08995 * 110.37150 * 142.81199 * 27 26 25 42 42 H 1.09001 * 110.37097 * 265.04167 * 27 26 25 43 43 H 1.08998 * 109.88291 * 59.56213 * 29 9 7 44 44 H 1.08996 * 109.88255 * 298.39334 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0010 11 6 -0.4038 -3.9366 0.6123 12 6 0.7783 -4.7525 0.0254 13 1 1.0250 -5.5940 0.6726 14 7 0.4661 -5.2165 -1.3286 15 6 1.1120 -6.2825 -1.8414 16 8 1.9537 -6.8593 -1.1799 17 6 0.7975 -6.7498 -3.2038 18 6 -0.1294 -6.1986 -4.0656 19 7 -0.1085 -6.9236 -5.1954 20 1 -0.6600 -6.7691 -5.9783 21 7 0.8456 -7.9375 -5.0546 22 6 1.3883 -7.8457 -3.8719 23 6 2.4577 -8.7500 -3.3157 24 1 2.5115 -8.6506 -2.2315 25 6 3.8255 -8.4216 -3.9542 26 6 4.5052 -9.7997 -4.1153 27 6 3.4680 -10.7977 -3.5544 28 8 2.1980 -10.1219 -3.6847 29 6 1.9317 -3.7275 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5995 -1.7589 0.6147 32 1 -0.5273 -2.4845 -1.0193 33 1 -1.3602 -4.3397 0.2792 34 1 -0.3534 -3.9034 1.7006 35 1 -0.2056 -4.7566 -1.8562 36 1 -0.7593 -5.3443 -3.8658 37 1 3.6892 -7.9471 -4.9261 38 1 4.4103 -7.7796 -3.2955 39 1 4.7050 -10.0066 -5.1666 40 1 5.4283 -9.8402 -3.5370 41 1 3.4702 -11.7167 -4.1404 42 1 3.6787 -11.0156 -2.5074 43 1 2.5577 -3.8512 0.8832 44 1 2.5286 -3.8643 -0.9022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015606148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = -3.208090 kcal Electronic energy + Delta-G solvation = -27164.767824 eV Core-core repulsion = 23311.431258 eV Total energy + Delta-G solvation = -3853.336566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56453 -40.53404 -40.12093 -38.65477 -35.46017 -33.71957 -33.59368 -32.89314 -31.63191 -30.65860 -29.61363 -28.76555 -26.47110 -24.72749 -24.32805 -22.40299 -22.04228 -21.88669 -21.06816 -20.82882 -19.48963 -18.81093 -17.65631 -17.21350 -17.00714 -16.92850 -16.63203 -16.32150 -16.19950 -15.66486 -15.35934 -15.24677 -14.69014 -14.63629 -14.29961 -14.21152 -13.83954 -13.70800 -13.34515 -12.96868 -12.80887 -12.74548 -12.66889 -12.28871 -12.28110 -12.06647 -12.03973 -11.97520 -11.79580 -11.60780 -11.39696 -11.04128 -10.80587 -10.72814 -10.49893 -10.14555 -9.77891 -8.84993 -7.75783 -5.18508 0.50250 0.93244 1.48025 1.48971 1.58872 1.71790 2.27993 2.39695 2.51350 2.94281 3.32971 3.34836 3.62791 3.72761 3.77729 3.85996 3.98287 4.02232 4.13121 4.19175 4.27550 4.34776 4.38421 4.41684 4.56788 4.71708 4.77492 4.80461 4.85832 4.92524 4.98699 5.03966 5.08617 5.11134 5.12828 5.20665 5.48002 5.64401 5.69330 5.80826 5.85261 6.21324 6.35660 6.43492 6.69726 7.15116 7.33109 7.80943 8.43874 9.25587 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002934 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.866884 B = 9539.485293 C = 9787.839403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.061 4.061 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.133 4.133 12 C 0.148 3.852 13 H 0.097 0.903 14 N -0.699 5.699 15 C 0.594 3.406 16 O -0.580 6.580 17 C -0.310 4.310 18 C 0.138 3.862 19 N -0.443 5.443 20 H 0.463 0.537 21 N -0.298 5.298 22 C 0.121 3.879 23 C 0.145 3.855 24 H 0.098 0.902 25 C -0.140 4.140 26 C -0.145 4.145 27 C 0.037 3.963 28 O -0.389 6.389 29 C 0.126 3.874 30 H 0.248 0.752 31 H 0.074 0.926 32 H 0.002 0.998 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.231 0.769 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.025 0.975 44 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 -17.426 -9.851 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.804 3.196 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.029 3.971 11 C -0.171 4.171 12 C 0.042 3.958 13 H 0.115 0.885 14 N -0.350 5.350 15 C 0.382 3.618 16 O -0.461 6.461 17 C -0.325 4.325 18 C -0.017 4.017 19 N -0.149 5.149 20 H 0.312 0.688 21 N -0.121 5.121 22 C -0.048 4.048 23 C 0.085 3.915 24 H 0.115 0.885 25 C -0.179 4.179 26 C -0.183 4.183 27 C -0.039 4.039 28 O -0.308 6.308 29 C 0.000 4.000 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.020 0.980 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.343 -18.372 -10.559 21.193 hybrid contribution 0.105 2.048 0.161 2.057 sum -0.238 -16.324 -10.398 19.356 Atomic orbital electron populations 1.70012 1.05781 1.24905 1.58575 1.25496 0.96675 1.00436 1.02733 0.85055 0.77930 0.79769 0.76831 1.19805 1.21795 1.21717 1.19406 0.90784 0.83952 1.42538 0.91046 1.44772 1.03023 1.00308 1.86744 1.21860 0.83506 0.94520 0.97175 1.23259 0.97426 0.95560 1.00904 1.21715 0.95167 0.95437 0.83464 0.88491 1.45642 1.42085 1.30583 1.16674 1.17450 0.80088 0.79283 0.84929 1.90671 1.35020 1.58366 1.62082 1.20206 1.09257 1.05168 0.97913 1.23736 0.96189 0.96295 0.85462 1.46201 1.30972 1.22265 1.15482 0.68831 1.77149 1.06262 1.09924 1.18777 1.22104 0.96564 0.94983 0.91100 1.21494 0.90581 0.80356 0.99055 0.88482 1.22887 0.94445 0.99271 1.01271 1.22927 0.99412 0.92648 1.03284 1.23655 0.81923 0.96696 1.01619 1.89144 1.31951 1.20205 1.89481 1.21785 0.95240 0.85562 0.97436 0.94251 0.90808 0.98002 0.88120 0.90165 0.75558 0.75300 0.91409 0.90074 0.89629 0.88491 0.87137 0.91258 0.95678 0.97028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.59 10.09 21.65 0.22 -53.37 16 2 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 3 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.62 -31.16 3.40 -691.03 -2.35 -33.50 16 10 C 0.15 6.89 5.87 87.02 0.51 7.40 16 11 C -0.13 -4.35 6.69 32.15 0.22 -4.14 16 12 C 0.15 4.98 3.28 46.18 0.15 5.13 16 13 H 0.10 3.21 7.62 -2.39 -0.02 3.19 16 14 N -0.70 -20.31 5.09 -440.18 -2.24 -22.55 16 15 C 0.59 18.62 7.81 86.66 0.68 19.30 16 16 O -0.58 -21.75 14.39 -4.04 -0.06 -21.81 16 17 C -0.31 -8.27 6.13 -20.15 -0.12 -8.39 16 18 C 0.14 2.40 11.52 84.28 0.97 3.37 16 19 N -0.44 -7.52 7.29 -56.31 -0.41 -7.93 16 20 H 0.46 3.98 8.96 -213.43 -1.91 2.06 16 21 N -0.30 -7.77 12.62 -46.68 -0.59 -8.36 16 22 C 0.12 3.46 6.10 43.51 0.27 3.73 16 23 C 0.14 4.09 3.52 30.35 0.11 4.20 16 24 H 0.10 3.09 6.02 -2.39 -0.01 3.08 16 25 C -0.14 -3.30 6.62 31.61 0.21 -3.09 16 26 C -0.15 -2.51 7.09 31.61 0.22 -2.29 16 27 C 0.04 0.71 7.63 72.49 0.55 1.26 16 28 O -0.39 -10.82 11.32 -148.98 -1.69 -12.51 16 29 C 0.13 5.39 6.99 86.73 0.61 6.00 16 30 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.07 3.85 5.87 -2.38 -0.01 3.83 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.41 9.80 7.55 -92.71 -0.70 9.10 16 36 H 0.23 1.96 7.46 -2.91 -0.02 1.93 16 37 H 0.07 1.66 7.87 -2.38 -0.02 1.64 16 38 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.01 0.53 8.04 -2.39 -0.02 0.51 16 Total: -1.00 -75.78 358.90 -0.96 -76.73 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -1.57 Total: 19.08 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.70 Total: 17.24 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -5.37 Total: -125.70 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.74 Total: -34.32 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.78 -0.96 -76.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015606148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.525 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds