Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47464 * 299.99822 * 3 2 1 6 6 H 1.48496 * 109.47378 * 60.00347 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 13 13 H 1.09002 * 110.72290 * 153.86663 * 12 11 10 14 14 N 1.46496 * 110.71861 * 276.95873 * 12 11 10 15 15 C 1.34782 * 120.00326 * 204.99872 * 14 12 11 16 16 O 1.21608 * 119.99595 * 0.02562 * 15 14 12 17 17 C 1.47420 * 120.00281 * 180.02562 * 15 14 12 18 18 C 1.38041 * 126.41641 * 359.68419 * 17 15 14 19 19 N 1.34255 * 107.41987 * 179.87556 * 18 17 15 20 20 H 0.97007 * 125.75684 * 180.11158 * 19 18 17 21 21 N 1.39936 * 108.49404 * 0.39665 * 19 18 17 22 22 C 1.30451 * 108.89248 * 359.74908 * 21 19 18 23 23 C 1.50702 * 125.98971 * 179.97438 * 22 21 19 24 24 H 1.08997 * 110.27400 * 165.63569 * 23 22 21 25 25 C 1.54941 * 110.31193 * 287.83920 * 23 22 21 26 26 C 1.55302 * 100.94412 * 155.35585 * 25 23 22 27 27 C 1.54373 * 102.25305 * 325.86469 * 26 25 23 28 28 O 1.43238 * 107.59096 * 21.35615 * 27 26 25 29 29 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 32 32 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 33 33 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 34 34 H 1.09000 * 111.00857 * 204.82205 * 11 10 9 35 35 H 0.97000 * 119.99859 * 25.00378 * 14 12 11 36 36 H 1.08004 * 126.28907 * 0.02562 * 18 17 15 37 37 H 1.09004 * 111.12254 * 273.27777 * 25 23 22 38 38 H 1.09003 * 111.12684 * 37.43260 * 25 23 22 39 39 H 1.09005 * 110.84728 * 207.67260 * 26 25 23 40 40 H 1.09003 * 111.01864 * 84.13364 * 26 25 23 41 41 H 1.08993 * 109.83471 * 261.84309 * 27 26 25 42 42 H 1.09006 * 109.82926 * 140.86998 * 27 26 25 43 43 H 1.09004 * 109.85762 * 59.49821 * 29 9 7 44 44 H 1.08995 * 110.00297 * 298.42768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 6 0.7740 -4.7541 0.0247 13 1 1.0176 -5.5945 0.6747 14 7 0.4598 -5.2216 -1.3277 15 6 1.0657 -6.3209 -1.8186 16 8 1.8729 -6.9251 -1.1386 17 6 0.7499 -6.7910 -3.1796 18 6 -0.1442 -6.2141 -4.0590 19 7 -0.1314 -6.9470 -5.1838 20 1 -0.6616 -6.7760 -5.9779 21 7 0.7709 -8.0033 -5.0151 22 6 1.3011 -7.9201 -3.8261 23 6 2.3220 -8.8633 -3.2437 24 1 2.7745 -8.4271 -2.3532 25 6 1.6644 -10.2244 -2.9037 26 6 2.8951 -11.1697 -2.9640 27 6 3.7413 -10.5346 -4.0881 28 8 3.3324 -9.1680 -4.2183 29 6 1.9294 -3.7314 -0.0017 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5266 -2.4860 -1.0215 32 1 -0.5999 -1.7581 0.6114 33 1 -0.3558 -3.8977 1.6973 34 1 -1.3630 -4.3301 0.2754 35 1 -0.1843 -4.7399 -1.8699 36 1 -0.7421 -5.3333 -3.8767 37 1 1.2277 -10.2112 -1.9050 38 1 0.9208 -10.4993 -3.6518 39 1 2.5935 -12.1827 -3.2306 40 1 3.4387 -11.1646 -2.0192 41 1 3.5677 -11.0632 -5.0253 42 1 4.7984 -10.5809 -3.8264 43 1 2.5552 -3.8562 0.8821 44 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015606149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = 21.687661 kcal Electronic energy + Delta-G solvation = -27116.910387 eV Core-core repulsion = 23264.653382 eV Total energy + Delta-G solvation = -3852.257005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60229 -39.25984 -39.17783 -37.08487 -33.84920 -32.68798 -32.09792 -31.97084 -30.35377 -29.06789 -28.77958 -27.13915 -24.57013 -23.65891 -23.16965 -21.78967 -20.68833 -20.19466 -19.81375 -19.67057 -18.45646 -16.91968 -16.63714 -16.40173 -16.11442 -15.58474 -15.31071 -14.94227 -14.68951 -14.18610 -14.05438 -13.75912 -13.67355 -13.48312 -13.10487 -13.01314 -12.49182 -11.98798 -11.91274 -11.76807 -11.60986 -11.52220 -11.08389 -11.07792 -11.02888 -10.89916 -10.76428 -10.39947 -10.10237 -9.94456 -9.87543 -9.71904 -9.57289 -9.33452 -8.99195 -8.71030 -8.55211 -6.84426 -5.67399 -3.07881 1.40699 1.97857 2.51507 3.38937 3.44308 3.45884 3.47691 3.59504 3.84524 4.20809 4.42124 4.48760 4.54337 4.73333 4.77876 5.06062 5.17549 5.21005 5.28209 5.41162 5.44851 5.47066 5.52464 5.55062 5.59006 5.73668 5.77018 5.81313 5.87449 6.02316 6.20720 6.28971 6.37686 6.49983 6.58193 6.75733 6.87035 6.94126 7.08634 7.38516 7.40700 7.62326 7.80107 7.88355 8.33455 8.54180 9.21168 9.81583 10.46318 11.36875 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002852 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.300630 B = 9813.998986 C = 9984.432623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.153 4.153 12 C 0.133 3.867 13 H 0.091 0.909 14 N -0.707 5.707 15 C 0.593 3.407 16 O -0.548 6.548 17 C -0.275 4.275 18 C 0.106 3.894 19 N -0.462 5.462 20 H 0.444 0.556 21 N -0.277 5.277 22 C 0.131 3.869 23 C 0.152 3.848 24 H 0.122 0.878 25 C -0.142 4.142 26 C -0.154 4.154 27 C 0.052 3.948 28 O -0.373 6.373 29 C 0.125 3.875 30 H 0.251 0.749 31 H 0.009 0.991 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.189 0.811 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 -19.388 -7.725 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.193 4.193 12 C 0.028 3.972 13 H 0.110 0.890 14 N -0.356 5.356 15 C 0.380 3.620 16 O -0.427 6.427 17 C -0.290 4.290 18 C -0.046 4.046 19 N -0.166 5.166 20 H 0.289 0.711 21 N -0.099 5.099 22 C -0.038 4.038 23 C 0.093 3.907 24 H 0.139 0.861 25 C -0.180 4.180 26 C -0.192 4.192 27 C -0.025 4.025 28 O -0.292 6.292 29 C -0.001 4.001 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.206 0.794 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.368 -20.095 -8.459 21.931 hybrid contribution -0.315 1.698 -0.058 1.728 sum -2.683 -18.396 -8.517 20.449 Atomic orbital electron populations 1.69788 1.04840 1.24566 1.58205 1.24761 0.95752 0.97657 1.02665 0.85996 0.78744 0.83591 0.77191 1.20523 1.21850 1.21763 1.19149 0.90607 0.82411 1.42333 0.90447 1.44582 1.01794 0.99772 1.86876 1.21941 0.84993 0.92549 0.97915 1.23345 0.95919 0.99059 1.00936 1.21982 0.96688 0.96397 0.82148 0.89050 1.45798 1.44681 1.27832 1.17306 1.17174 0.80358 0.80054 0.84431 1.90686 1.34796 1.57496 1.59747 1.20289 1.08241 1.02102 0.98340 1.23219 0.97944 0.96844 0.86622 1.46165 1.34449 1.21562 1.14460 0.71114 1.77188 1.06776 1.07482 1.18498 1.22176 0.96018 0.94633 0.90925 1.21629 0.85343 0.92501 0.91193 0.86057 1.23243 0.98097 0.93233 1.03432 1.23122 0.96406 0.99835 0.99840 1.23103 0.98498 0.82516 0.98345 1.88479 1.56358 1.27279 1.57043 1.21757 0.93961 0.85803 0.98619 0.93871 0.97326 0.87421 0.90614 0.91776 0.76912 0.79378 0.89237 0.90314 0.89980 0.90067 0.91478 0.91262 0.95011 0.95470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.00 10.28 -15.06 -0.15 -6.15 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.13 3.40 -169.86 -0.58 -15.71 16 10 C 0.15 3.42 5.85 -2.53 -0.01 3.41 16 11 C -0.15 -2.67 6.67 -24.58 -0.16 -2.84 16 12 C 0.13 2.32 3.32 -66.10 -0.22 2.10 16 13 H 0.09 1.57 7.55 -51.93 -0.39 1.18 16 14 N -0.71 -10.84 5.09 -53.10 -0.27 -11.11 16 15 C 0.59 9.48 7.81 -12.52 -0.10 9.39 16 16 O -0.55 -10.16 14.31 5.27 0.08 -10.08 16 17 C -0.27 -3.80 6.13 -105.07 -0.64 -4.44 16 18 C 0.11 1.08 11.52 -16.56 -0.19 0.89 16 19 N -0.46 -4.47 7.29 30.85 0.22 -4.24 16 20 H 0.44 2.57 8.96 -182.71 -1.64 0.93 16 21 N -0.28 -3.71 12.63 33.90 0.43 -3.28 16 22 C 0.13 1.89 6.20 -82.02 -0.51 1.38 16 23 C 0.15 2.10 3.73 -26.86 -0.10 2.00 16 24 H 0.12 1.88 5.91 -51.93 -0.31 1.57 16 25 C -0.14 -1.50 6.56 -24.49 -0.16 -1.66 16 26 C -0.15 -1.32 7.02 -24.79 -0.17 -1.49 16 27 C 0.05 0.53 7.79 37.88 0.30 0.82 16 28 O -0.37 -5.36 11.03 -35.23 -0.39 -5.75 16 29 C 0.13 2.69 7.00 -2.92 -0.02 2.67 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.11 2.80 5.86 -51.93 -0.30 2.49 16 33 H 0.08 1.31 8.14 -51.92 -0.42 0.88 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 5.32 7.56 -40.82 -0.31 5.01 16 36 H 0.19 1.23 7.46 -52.48 -0.39 0.84 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.83 8.05 -51.93 -0.42 0.42 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -34.44 358.91 -9.34 -43.78 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.53 Total: 4.11 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -2.25 Total: 5.60 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.36 Total: -60.00 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.31 Total: -15.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.44 -9.34 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015606149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.465 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds