Wall clock time and date at job start Tue Mar 31 2020 12:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47464 * 299.99822 * 3 2 1 6 6 H 1.48496 * 109.47378 * 60.00347 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 13 13 H 1.09002 * 110.72290 * 153.86663 * 12 11 10 14 14 N 1.46496 * 110.71861 * 276.95873 * 12 11 10 15 15 C 1.34782 * 120.00326 * 204.99872 * 14 12 11 16 16 O 1.21608 * 119.99595 * 0.02562 * 15 14 12 17 17 C 1.47420 * 120.00281 * 180.02562 * 15 14 12 18 18 C 1.38041 * 126.41641 * 359.68419 * 17 15 14 19 19 N 1.34255 * 107.41987 * 179.87556 * 18 17 15 20 20 H 0.97007 * 125.75684 * 180.11158 * 19 18 17 21 21 N 1.39936 * 108.49404 * 0.39665 * 19 18 17 22 22 C 1.30451 * 108.89248 * 359.74908 * 21 19 18 23 23 C 1.50702 * 125.98971 * 179.97438 * 22 21 19 24 24 H 1.08997 * 110.27400 * 165.63569 * 23 22 21 25 25 C 1.54941 * 110.31193 * 287.83920 * 23 22 21 26 26 C 1.55302 * 100.94412 * 155.35585 * 25 23 22 27 27 C 1.54373 * 102.25305 * 325.86469 * 26 25 23 28 28 O 1.43238 * 107.59096 * 21.35615 * 27 26 25 29 29 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 32 32 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 33 33 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 34 34 H 1.09000 * 111.00857 * 204.82205 * 11 10 9 35 35 H 0.97000 * 119.99859 * 25.00378 * 14 12 11 36 36 H 1.08004 * 126.28907 * 0.02562 * 18 17 15 37 37 H 1.09004 * 111.12254 * 273.27777 * 25 23 22 38 38 H 1.09003 * 111.12684 * 37.43260 * 25 23 22 39 39 H 1.09005 * 110.84728 * 207.67260 * 26 25 23 40 40 H 1.09003 * 111.01864 * 84.13364 * 26 25 23 41 41 H 1.08993 * 109.83471 * 261.84309 * 27 26 25 42 42 H 1.09006 * 109.82926 * 140.86998 * 27 26 25 43 43 H 1.09004 * 109.85762 * 59.49821 * 29 9 7 44 44 H 1.08995 * 110.00297 * 298.42768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 6 0.7740 -4.7541 0.0247 13 1 1.0176 -5.5945 0.6747 14 7 0.4598 -5.2216 -1.3277 15 6 1.0657 -6.3209 -1.8186 16 8 1.8729 -6.9251 -1.1386 17 6 0.7499 -6.7910 -3.1796 18 6 -0.1442 -6.2141 -4.0590 19 7 -0.1314 -6.9470 -5.1838 20 1 -0.6616 -6.7760 -5.9779 21 7 0.7709 -8.0033 -5.0151 22 6 1.3011 -7.9201 -3.8261 23 6 2.3220 -8.8633 -3.2437 24 1 2.7745 -8.4271 -2.3532 25 6 1.6644 -10.2244 -2.9037 26 6 2.8951 -11.1697 -2.9640 27 6 3.7413 -10.5346 -4.0881 28 8 3.3324 -9.1680 -4.2183 29 6 1.9294 -3.7314 -0.0017 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5266 -2.4860 -1.0215 32 1 -0.5999 -1.7581 0.6114 33 1 -0.3558 -3.8977 1.6973 34 1 -1.3630 -4.3301 0.2754 35 1 -0.1843 -4.7399 -1.8699 36 1 -0.7421 -5.3333 -3.8767 37 1 1.2277 -10.2112 -1.9050 38 1 0.9208 -10.4993 -3.6518 39 1 2.5935 -12.1827 -3.2306 40 1 3.4387 -11.1646 -2.0192 41 1 3.5677 -11.0632 -5.0253 42 1 4.7984 -10.5809 -3.8264 43 1 2.5552 -3.8562 0.8821 44 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015606149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:33 Heat of formation + Delta-G solvation = -3.783194 kcal Electronic energy + Delta-G solvation = -27118.014886 eV Core-core repulsion = 23264.653382 eV Total energy + Delta-G solvation = -3853.361505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.55281 -40.53031 -40.14469 -38.66238 -35.45896 -33.72597 -33.59441 -32.93287 -31.62464 -30.66318 -29.69488 -28.78233 -26.46734 -24.54621 -24.31405 -22.56101 -22.03734 -21.86317 -21.08331 -20.76781 -19.48966 -18.81449 -17.66346 -17.49211 -17.01817 -16.94892 -16.63172 -16.33641 -15.88821 -15.67558 -15.35418 -15.24099 -14.69893 -14.52435 -14.34221 -14.23037 -13.89491 -13.72502 -13.34353 -12.97705 -12.81041 -12.71833 -12.66081 -12.30195 -12.29192 -12.07618 -12.03462 -11.97850 -11.80513 -11.78715 -11.39838 -10.95799 -10.78326 -10.73243 -10.35135 -10.14202 -9.77557 -8.85544 -7.76042 -5.18810 0.50677 0.93529 1.47687 1.48572 1.58561 1.72930 2.24814 2.42587 2.50857 2.93651 3.31931 3.34194 3.58580 3.67598 3.74236 3.86701 4.00374 4.03386 4.13254 4.22270 4.27116 4.36526 4.37369 4.39543 4.59492 4.71004 4.79218 4.80588 4.87055 4.94624 4.97811 5.00253 5.08697 5.11444 5.17154 5.27807 5.47473 5.64274 5.69529 5.84990 6.00113 6.22342 6.35467 6.44289 6.69925 7.14800 7.33235 7.80146 8.43547 9.25189 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002852 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.300630 B = 9813.998986 C = 9984.432623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.622 5.622 10 C 0.153 3.847 11 C -0.132 4.132 12 C 0.148 3.852 13 H 0.100 0.900 14 N -0.700 5.700 15 C 0.594 3.406 16 O -0.580 6.580 17 C -0.310 4.310 18 C 0.137 3.863 19 N -0.443 5.443 20 H 0.463 0.537 21 N -0.299 5.299 22 C 0.117 3.883 23 C 0.146 3.854 24 H 0.096 0.904 25 C -0.135 4.135 26 C -0.145 4.145 27 C 0.042 3.958 28 O -0.402 6.402 29 C 0.124 3.876 30 H 0.248 0.752 31 H 0.001 0.999 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.408 0.592 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -20.233 -8.499 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.804 3.196 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.028 3.972 11 C -0.171 4.171 12 C 0.042 3.958 13 H 0.118 0.882 14 N -0.350 5.350 15 C 0.383 3.617 16 O -0.461 6.461 17 C -0.325 4.325 18 C -0.017 4.017 19 N -0.149 5.149 20 H 0.311 0.689 21 N -0.122 5.122 22 C -0.051 4.051 23 C 0.087 3.913 24 H 0.114 0.886 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.034 4.034 28 O -0.322 6.322 29 C -0.002 4.002 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.244 0.756 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.044 0.956 44 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.567 -20.968 -9.275 23.204 hybrid contribution 0.074 1.973 0.113 1.978 sum -3.493 -18.995 -9.162 21.377 Atomic orbital electron populations 1.70010 1.05753 1.24905 1.58571 1.25492 0.96691 1.00412 1.02731 0.85055 0.77897 0.79769 0.76864 1.19888 1.21773 1.21635 1.19398 0.90766 0.83969 1.42558 0.91135 1.44835 1.03047 1.00240 1.86764 1.21786 0.83493 0.94691 0.97188 1.23178 0.97492 0.95475 1.00915 1.21707 0.95035 0.95436 0.83576 0.88235 1.45640 1.44888 1.27795 1.16658 1.17465 0.79595 0.79625 0.85055 1.90670 1.36171 1.58484 1.60812 1.20209 1.10819 1.03392 0.98127 1.23720 0.96060 0.96648 0.85319 1.46197 1.33371 1.20302 1.15078 0.68861 1.77124 1.07868 1.09048 1.18156 1.22318 0.96366 0.95046 0.91381 1.21558 0.85510 0.93963 0.90303 0.88600 1.23195 0.98719 0.92023 1.03417 1.23127 0.95101 1.00460 0.99571 1.23356 0.99317 0.81108 0.99647 1.88435 1.56783 1.29616 1.57323 1.21847 0.95340 0.85631 0.97430 0.94232 0.98078 0.90739 0.90166 0.88102 0.75584 0.75402 0.88985 0.90251 0.87428 0.89516 0.90350 0.90373 0.95608 0.97175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.81 10.09 21.65 0.22 -53.60 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 3 Si 0.98 45.33 29.55 68.60 2.03 47.35 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.24 -13.36 10.28 84.03 0.86 -12.49 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.62 -31.46 3.40 -691.31 -2.35 -33.82 16 10 C 0.15 6.88 5.85 86.85 0.51 7.39 16 11 C -0.13 -4.33 6.67 31.98 0.21 -4.11 16 12 C 0.15 5.01 3.32 46.18 0.15 5.16 16 13 H 0.10 3.29 7.55 -2.39 -0.02 3.27 16 14 N -0.70 -20.39 5.09 -440.18 -2.24 -22.63 16 15 C 0.59 18.63 7.81 86.66 0.68 19.31 16 16 O -0.58 -21.78 14.31 -4.05 -0.06 -21.83 16 17 C -0.31 -8.25 6.13 -20.15 -0.12 -8.38 16 18 C 0.14 2.39 11.52 84.28 0.97 3.36 16 19 N -0.44 -7.46 7.29 -56.32 -0.41 -7.87 16 20 H 0.46 3.92 8.96 -213.42 -1.91 2.01 16 21 N -0.30 -7.67 12.63 -46.67 -0.59 -8.25 16 22 C 0.12 3.33 6.20 43.52 0.27 3.60 16 23 C 0.15 4.10 3.73 30.51 0.11 4.21 16 24 H 0.10 3.14 5.91 -2.39 -0.01 3.12 16 25 C -0.14 -2.80 6.56 32.05 0.21 -2.59 16 26 C -0.15 -2.29 7.02 31.85 0.22 -2.07 16 27 C 0.04 0.82 7.79 72.45 0.56 1.38 16 28 O -0.40 -11.73 11.03 -148.98 -1.64 -13.37 16 29 C 0.12 5.36 7.00 86.68 0.61 5.97 16 30 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.07 3.90 5.86 -2.39 -0.01 3.88 16 33 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.41 9.91 7.56 -92.71 -0.70 9.21 16 36 H 0.23 1.99 7.46 -2.91 -0.02 1.97 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 39 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 Total: -1.00 -76.72 358.91 -0.90 -77.62 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -1.57 Total: 18.55 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 5.72 Total: 17.84 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -5.37 Total: -126.16 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.70 Total: -35.21 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.72 -0.90 -77.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015606149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.832 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds