Wall clock time and date at job start Tue Mar 31 2020 12:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21303 * 120.00012 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.40445 * 119.99755 * 179.72510 * 4 2 1 6 6 C 1.35011 * 126.85689 * 0.30429 * 5 4 2 7 7 N 1.36783 * 108.93145 * 179.97438 * 6 5 4 8 8 H 0.97004 * 124.78930 * 180.02562 * 7 6 5 9 9 C 1.34589 * 110.41371 * 0.02562 * 7 6 5 10 10 C 1.50707 * 125.81614 * 180.02562 * 9 7 6 11 11 C 1.37829 * 108.36736 * 359.71764 * 9 7 6 12 12 C 1.47123 * 127.00118 * 180.26878 * 11 9 7 13 13 O 1.21642 * 119.99795 * 270.19247 * 12 11 9 14 14 N 1.34775 * 120.00184 * 90.19274 * 12 11 9 15 15 C 1.47021 * 125.64905 * 359.68779 * 14 12 11 16 16 C 1.54332 * 107.26774 * 178.85160 * 15 14 12 17 17 C 1.55152 * 103.02130 * 338.14289 * 16 15 14 18 18 H 1.09001 * 111.00768 * 277.23426 * 17 16 15 19 19 N 1.46495 * 111.00492 * 153.37893 * 17 16 15 20 20 C 1.36941 * 120.00336 * 92.80439 * 19 17 16 21 21 H 1.08002 * 119.99434 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00253 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99701 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47185 * 60.00339 * 24 22 20 26 26 H 1.48504 * 109.46866 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47496 * 299.99918 * 24 22 20 28 28 C 1.47425 * 125.64994 * 180.02562 * 14 12 11 29 29 H 1.08993 * 109.47916 * 240.00340 * 1 2 3 30 30 H 1.09008 * 109.47115 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47112 * 119.99719 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 33 33 H 1.08000 * 125.53478 * 359.97438 * 6 5 4 34 34 H 1.08994 * 109.47507 * 89.97082 * 10 9 7 35 35 H 1.09000 * 109.46860 * 209.97411 * 10 9 7 36 36 H 1.09001 * 109.46706 * 329.97133 * 10 9 7 37 37 H 1.08998 * 109.88398 * 298.40195 * 15 14 12 38 38 H 1.09008 * 109.87679 * 59.56640 * 15 14 12 39 39 H 1.09003 * 110.85297 * 219.67361 * 16 15 14 40 40 H 1.09004 * 110.51586 * 96.45909 * 16 15 14 41 41 H 0.97005 * 120.00244 * 272.81004 * 19 17 16 42 42 H 0.96996 * 120.00028 * 179.97438 * 23 22 20 43 43 H 1.09003 * 110.36481 * 322.92601 * 28 14 12 44 44 H 1.08998 * 110.37252 * 85.14048 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5852 -1.1673 -0.0053 6 6 4.3951 -0.0871 -0.0060 7 7 5.6965 -0.5081 -0.0119 8 1 6.4683 0.0795 -0.0132 9 6 5.7548 -1.8528 -0.0156 10 6 7.0140 -2.6808 -0.0219 11 6 4.4669 -2.3434 -0.0057 12 6 4.0577 -3.7566 -0.0001 13 8 3.8847 -4.3438 -1.0513 14 7 3.8746 -4.4005 1.1696 15 6 4.0544 -3.8162 2.5067 16 6 3.7065 -4.9121 3.5361 17 6 2.8129 -5.8851 2.7224 18 1 1.7812 -5.5348 2.6915 19 7 2.8878 -7.2442 3.2640 20 6 1.9744 -7.6617 4.1950 21 1 1.1985 -6.9890 4.5295 22 6 2.0450 -8.9496 4.7077 23 7 2.9903 -9.7696 4.2996 24 14 0.7985 -9.5191 5.9771 25 1 -0.5676 -9.4369 5.4009 26 1 1.0903 -10.9235 6.3619 27 1 0.8824 -8.6498 7.1781 28 6 3.4677 -5.8095 1.3203 29 1 -0.3635 -0.5137 0.8899 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0684 0.9423 -0.0025 34 1 7.3212 -2.8828 1.0042 35 1 6.8267 -3.6229 -0.5372 36 1 7.8048 -2.1357 -0.5373 37 1 5.0888 -3.4981 2.6362 38 1 3.3842 -2.9657 2.6326 39 1 3.1540 -4.4932 4.3772 40 1 4.6108 -5.4147 3.8794 41 1 3.5845 -7.8485 2.9633 42 1 3.0398 -10.6694 4.6583 43 1 2.7461 -6.0804 0.5495 44 1 4.3384 -6.4633 1.2704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019064212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:24 Heat of formation + Delta-G solvation = -10.583089 kcal Electronic energy + Delta-G solvation = -27062.149436 eV Core-core repulsion = 23208.493066 eV Total energy + Delta-G solvation = -3853.656370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51603 -39.66121 -39.27206 -37.10426 -34.94798 -34.10876 -31.89384 -31.49765 -30.94334 -29.55367 -29.24525 -27.73326 -26.14484 -24.03280 -22.97842 -22.28522 -21.44170 -20.09815 -19.83912 -18.71166 -18.07096 -17.35073 -16.52035 -16.36295 -16.04404 -15.67549 -15.64046 -15.13472 -14.65556 -14.47847 -14.02987 -13.77868 -13.56629 -13.21694 -13.15754 -12.99545 -12.93641 -12.82629 -12.65996 -12.50013 -12.35699 -12.06021 -11.79249 -11.57376 -11.18730 -11.02446 -10.84749 -10.72222 -10.30586 -10.11415 -10.09028 -9.83882 -9.72486 -8.97836 -8.40680 -8.36429 -7.84240 -7.07097 -5.84290 -3.14909 1.95878 1.97086 2.66827 2.79497 2.90085 3.15456 3.40026 3.43789 3.45681 3.48590 4.46307 4.53097 4.62817 4.78717 4.90764 5.00134 5.08856 5.10257 5.21524 5.29273 5.34508 5.40849 5.54580 5.58909 5.63388 5.65982 5.68471 5.74369 5.77544 5.93041 6.03204 6.15177 6.26626 6.38975 6.57217 6.62370 6.68626 6.80771 6.89393 7.24379 7.39528 7.62708 7.77573 7.92233 8.32922 8.38960 9.44733 9.98802 10.33646 11.37827 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.003136 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.344655 B = 8925.340577 C =10034.266749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.540 6.540 4 N -0.640 5.640 5 C 0.090 3.910 6 C -0.027 4.027 7 N -0.546 5.546 8 H 0.419 0.581 9 C 0.083 3.917 10 C -0.092 4.092 11 C -0.226 4.226 12 C 0.603 3.397 13 O -0.542 6.542 14 N -0.604 5.604 15 C 0.110 3.890 16 C -0.156 4.156 17 C 0.173 3.827 18 H 0.066 0.934 19 N -0.714 5.714 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.096 3.904 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.414 0.586 33 H 0.193 0.807 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 20.599 -7.742 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.417 6.417 4 N -0.283 5.283 5 C -0.010 4.010 6 C -0.157 4.157 7 N -0.142 5.142 8 H 0.256 0.744 9 C -0.034 4.034 10 C -0.149 4.149 11 C -0.238 4.238 12 C 0.391 3.609 13 O -0.420 6.420 14 N -0.337 5.337 15 C -0.014 4.014 16 C -0.197 4.197 17 C 0.061 3.939 18 H 0.084 0.916 19 N -0.354 5.354 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.027 4.027 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.209 0.791 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.781 21.106 -8.240 22.970 hybrid contribution -0.334 -0.716 0.731 1.077 sum 3.446 20.389 -7.509 22.000 Atomic orbital electron populations 1.21899 0.90546 1.05871 1.04853 1.20929 0.90854 0.82731 0.75572 1.90575 1.70276 1.31410 1.49464 1.42990 1.03864 1.09864 1.71589 1.17744 0.82264 0.92153 1.08843 1.22031 0.81184 0.99498 1.12968 1.41354 1.08193 1.05821 1.58878 0.74450 1.20236 0.95062 0.83423 1.04699 1.20444 0.91946 0.99182 1.03368 1.19856 0.91725 0.91505 1.20741 1.16989 0.76923 0.84723 0.82258 1.90797 1.51845 1.68347 1.31019 1.48458 1.66816 1.12861 1.05607 1.21987 1.00380 0.96963 0.82055 1.23438 1.02042 0.96711 0.97552 1.21282 0.96393 0.87182 0.89037 0.91618 1.42256 1.35889 1.08610 1.48601 1.19179 1.07025 0.96366 1.15135 0.91034 1.24763 0.98792 0.96515 1.00482 1.69648 1.34419 1.07159 1.46539 0.86251 0.80837 0.77659 0.81304 1.21155 1.21652 1.21187 1.22628 0.99705 0.80864 0.99514 0.88879 0.88571 0.89017 0.75091 0.79086 0.90204 0.89694 0.91046 0.92295 0.92188 0.90816 0.90690 0.77925 0.93283 0.90566 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.32 36.00 0.37 -0.75 16 2 C 0.51 5.46 7.91 -10.99 -0.09 5.37 16 3 O -0.54 -7.29 14.30 5.54 0.08 -7.21 16 4 N -0.64 -7.27 5.46 -8.51 -0.05 -7.31 16 5 C 0.09 1.18 7.22 -81.51 -0.59 0.59 16 6 C -0.03 -0.31 10.79 -16.49 -0.18 -0.49 16 7 N -0.55 -5.03 5.90 -8.68 -0.05 -5.08 16 8 H 0.42 2.34 8.96 -40.82 -0.37 1.97 16 9 C 0.08 0.93 7.21 -81.53 -0.59 0.34 16 10 C -0.09 -0.81 10.24 36.01 0.37 -0.44 16 11 C -0.23 -3.12 5.26 -102.90 -0.54 -3.66 16 12 C 0.60 9.76 7.36 -12.66 -0.09 9.67 16 13 O -0.54 -10.67 17.36 5.24 0.09 -10.58 16 14 N -0.60 -9.32 3.33 -171.87 -0.57 -9.89 16 15 C 0.11 1.50 6.47 -3.06 -0.02 1.48 16 16 C -0.16 -2.50 6.64 -24.89 -0.17 -2.66 16 17 C 0.17 3.24 3.72 -65.78 -0.24 3.00 16 18 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 19 N -0.71 -16.97 5.24 -51.34 -0.27 -17.24 16 20 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 24 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.10 1.67 6.55 -2.52 -0.02 1.65 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.58 8.12 -51.92 -0.42 0.16 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.41 4.26 8.82 -40.82 -0.36 3.90 16 33 H 0.19 2.24 5.86 -52.49 -0.31 1.93 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.39 9.83 7.76 -40.82 -0.32 9.51 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 44 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -34.29 373.59 -7.83 -42.12 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.37 Total: 12.35 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.03 Total: 7.10 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.21 Total: -66.04 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.29 -7.83 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019064212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.537 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds