Wall clock time and date at job start Tue Mar 31 2020 12:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21303 * 120.00012 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.40445 * 119.99755 * 179.72510 * 4 2 1 6 6 C 1.35011 * 126.85689 * 0.30429 * 5 4 2 7 7 N 1.36783 * 108.93145 * 179.97438 * 6 5 4 8 8 H 0.97004 * 124.78930 * 180.02562 * 7 6 5 9 9 C 1.34589 * 110.41371 * 0.02562 * 7 6 5 10 10 C 1.50707 * 125.81614 * 180.02562 * 9 7 6 11 11 C 1.37829 * 108.36736 * 359.71764 * 9 7 6 12 12 C 1.47123 * 127.00118 * 180.26878 * 11 9 7 13 13 O 1.21642 * 119.99795 * 270.19247 * 12 11 9 14 14 N 1.34775 * 120.00184 * 90.19274 * 12 11 9 15 15 C 1.47021 * 125.64905 * 359.68779 * 14 12 11 16 16 C 1.54332 * 107.26774 * 178.85160 * 15 14 12 17 17 C 1.55152 * 103.02130 * 338.14289 * 16 15 14 18 18 H 1.09001 * 111.00768 * 277.23426 * 17 16 15 19 19 N 1.46495 * 111.00492 * 153.37893 * 17 16 15 20 20 C 1.36941 * 120.00336 * 92.80439 * 19 17 16 21 21 H 1.08002 * 119.99434 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00253 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99701 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47185 * 60.00339 * 24 22 20 26 26 H 1.48504 * 109.46866 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47496 * 299.99918 * 24 22 20 28 28 C 1.47425 * 125.64994 * 180.02562 * 14 12 11 29 29 H 1.08993 * 109.47916 * 240.00340 * 1 2 3 30 30 H 1.09008 * 109.47115 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47112 * 119.99719 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 33 33 H 1.08000 * 125.53478 * 359.97438 * 6 5 4 34 34 H 1.08994 * 109.47507 * 89.97082 * 10 9 7 35 35 H 1.09000 * 109.46860 * 209.97411 * 10 9 7 36 36 H 1.09001 * 109.46706 * 329.97133 * 10 9 7 37 37 H 1.08998 * 109.88398 * 298.40195 * 15 14 12 38 38 H 1.09008 * 109.87679 * 59.56640 * 15 14 12 39 39 H 1.09003 * 110.85297 * 219.67361 * 16 15 14 40 40 H 1.09004 * 110.51586 * 96.45909 * 16 15 14 41 41 H 0.97005 * 120.00244 * 272.81004 * 19 17 16 42 42 H 0.96996 * 120.00028 * 179.97438 * 23 22 20 43 43 H 1.09003 * 110.36481 * 322.92601 * 28 14 12 44 44 H 1.08998 * 110.37252 * 85.14048 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5852 -1.1673 -0.0053 6 6 4.3951 -0.0871 -0.0060 7 7 5.6965 -0.5081 -0.0119 8 1 6.4683 0.0795 -0.0132 9 6 5.7548 -1.8528 -0.0156 10 6 7.0140 -2.6808 -0.0219 11 6 4.4669 -2.3434 -0.0057 12 6 4.0577 -3.7566 -0.0001 13 8 3.8847 -4.3438 -1.0513 14 7 3.8746 -4.4005 1.1696 15 6 4.0544 -3.8162 2.5067 16 6 3.7065 -4.9121 3.5361 17 6 2.8129 -5.8851 2.7224 18 1 1.7812 -5.5348 2.6915 19 7 2.8878 -7.2442 3.2640 20 6 1.9744 -7.6617 4.1950 21 1 1.1985 -6.9890 4.5295 22 6 2.0450 -8.9496 4.7077 23 7 2.9903 -9.7696 4.2996 24 14 0.7985 -9.5191 5.9771 25 1 -0.5676 -9.4369 5.4009 26 1 1.0903 -10.9235 6.3619 27 1 0.8824 -8.6498 7.1781 28 6 3.4677 -5.8095 1.3203 29 1 -0.3635 -0.5137 0.8899 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0684 0.9423 -0.0025 34 1 7.3212 -2.8828 1.0042 35 1 6.8267 -3.6229 -0.5372 36 1 7.8048 -2.1357 -0.5373 37 1 5.0888 -3.4981 2.6362 38 1 3.3842 -2.9657 2.6326 39 1 3.1540 -4.4932 4.3772 40 1 4.6108 -5.4147 3.8794 41 1 3.5845 -7.8485 2.9633 42 1 3.0398 -10.6694 4.6583 43 1 2.7461 -6.0804 0.5495 44 1 4.3384 -6.4633 1.2704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019064212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:23 Heat of formation + Delta-G solvation = -35.463250 kcal Electronic energy + Delta-G solvation = -27063.228321 eV Core-core repulsion = 23208.493066 eV Total energy + Delta-G solvation = -3854.735255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42310 -40.75061 -40.33425 -38.53766 -35.90104 -35.82124 -33.38813 -32.48919 -31.91698 -30.97520 -30.07919 -29.17339 -27.06881 -25.71828 -24.45232 -23.10381 -22.56082 -21.60806 -20.73474 -19.72153 -19.29795 -19.09977 -17.69876 -17.31921 -17.16735 -16.76563 -16.50436 -16.36152 -16.19587 -15.47345 -15.39452 -15.18849 -14.79047 -14.61954 -14.31977 -14.14605 -13.78534 -13.61447 -13.54524 -13.40101 -13.34628 -13.12127 -13.08507 -12.99829 -12.76604 -12.61756 -12.35856 -12.14562 -11.89810 -11.74567 -11.61076 -11.15396 -10.91928 -10.91572 -9.68595 -9.34869 -9.03010 -8.72341 -7.92945 -5.22983 1.03685 1.12359 1.47414 1.51448 1.53737 1.59634 1.88647 2.00496 2.12935 2.52505 2.60147 3.37820 3.65383 3.72049 3.75878 3.82844 3.99093 4.12260 4.22577 4.28487 4.33358 4.39704 4.51407 4.53868 4.64206 4.67732 4.70962 4.77021 4.87929 4.90040 4.90288 5.00776 5.08241 5.15310 5.24736 5.26357 5.42925 5.55717 5.78332 5.91178 6.27626 6.43702 6.52237 6.66695 7.10313 7.11444 7.34748 8.06171 8.30282 9.30138 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.003136 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.344655 B = 8925.340577 C =10034.266749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.505 3.495 3 O -0.572 6.572 4 N -0.641 5.641 5 C 0.072 3.928 6 C -0.028 4.028 7 N -0.525 5.525 8 H 0.438 0.562 9 C 0.098 3.902 10 C -0.092 4.092 11 C -0.261 4.261 12 C 0.610 3.390 13 O -0.585 6.585 14 N -0.599 5.599 15 C 0.120 3.880 16 C -0.143 4.143 17 C 0.169 3.831 18 H 0.067 0.933 19 N -0.727 5.727 20 C -0.242 4.242 21 H 0.081 0.919 22 C -0.072 4.072 23 N -0.969 5.969 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.299 1.299 27 H -0.276 1.276 28 C 0.106 3.894 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.417 0.583 33 H 0.192 0.808 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.063 0.937 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 22.783 -7.101 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.284 5.284 5 C -0.028 4.028 6 C -0.159 4.159 7 N -0.123 5.123 8 H 0.278 0.722 9 C -0.021 4.021 10 C -0.149 4.149 11 C -0.274 4.274 12 C 0.400 3.600 13 O -0.466 6.466 14 N -0.332 5.332 15 C -0.003 4.003 16 C -0.184 4.184 17 C 0.059 3.941 18 H 0.085 0.915 19 N -0.366 5.366 20 C -0.373 4.373 21 H 0.099 0.901 22 C -0.264 4.264 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.204 1.204 26 H -0.226 1.226 27 H -0.202 1.202 28 C -0.018 4.018 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.252 0.748 33 H 0.209 0.791 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.778 23.375 -7.587 24.864 hybrid contribution -0.299 -1.307 0.463 1.418 sum 3.479 22.068 -7.124 23.449 Atomic orbital electron populations 1.21937 0.87256 1.06766 1.06420 1.21690 0.92376 0.81939 0.74397 1.90553 1.71253 1.32352 1.50970 1.43115 1.03509 1.10342 1.71479 1.18027 0.83165 0.92215 1.09397 1.22034 0.81870 0.99141 1.12808 1.41304 1.08284 1.05455 1.57285 0.72150 1.20531 0.94984 0.84141 1.02483 1.20534 0.91667 0.98247 1.04449 1.19718 0.93244 0.90127 1.24278 1.17305 0.75748 0.85494 0.81466 1.90768 1.53742 1.69562 1.32494 1.48448 1.66418 1.11874 1.06420 1.21991 1.01998 0.96212 0.80058 1.23229 1.00860 0.96357 0.97975 1.21417 0.97199 0.85517 0.89982 0.91512 1.42397 1.35221 1.10404 1.48600 1.19589 1.06905 0.96352 1.14503 0.90082 1.25547 1.00891 0.96983 1.03016 1.69808 1.36548 1.07203 1.48361 0.85232 0.78773 0.76614 0.79243 1.20435 1.22567 1.20160 1.22338 0.98938 0.82230 0.98344 0.87178 0.88033 0.87379 0.74770 0.79134 0.88753 0.91655 0.88019 0.90292 0.90625 0.89854 0.91692 0.79311 0.94015 0.91824 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.32 71.24 0.74 -1.08 16 2 C 0.51 10.22 7.91 87.66 0.69 10.91 16 3 O -0.57 -14.97 14.30 -3.10 -0.04 -15.01 16 4 N -0.64 -13.96 5.46 -299.23 -1.63 -15.59 16 5 C 0.07 1.81 7.22 39.31 0.28 2.09 16 6 C -0.03 -0.60 10.79 83.18 0.90 0.29 16 7 N -0.53 -8.33 5.90 -181.37 -1.07 -9.40 16 8 H 0.44 3.47 8.96 -92.71 -0.83 2.64 16 9 C 0.10 1.97 7.21 42.04 0.30 2.27 16 10 C -0.09 -1.37 10.24 71.24 0.73 -0.64 16 11 C -0.26 -6.90 5.26 -18.75 -0.10 -7.00 16 12 C 0.61 19.53 7.36 86.58 0.64 20.17 16 13 O -0.59 -23.42 17.36 -4.16 -0.07 -23.49 16 14 N -0.60 -18.04 3.33 -815.93 -2.71 -20.75 16 15 C 0.12 3.03 6.47 86.73 0.56 3.59 16 16 C -0.14 -4.36 6.64 31.78 0.21 -4.15 16 17 C 0.17 6.26 3.72 46.39 0.17 6.43 16 18 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 19 N -0.73 -34.86 5.24 -316.35 -1.66 -36.52 16 20 C -0.24 -12.75 9.96 84.03 0.84 -11.92 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 23 N -0.97 -57.85 13.06 21.65 0.28 -57.56 16 24 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 C 0.11 3.70 6.55 86.86 0.57 4.27 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.04 8.12 -2.38 -0.02 1.02 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.42 8.27 8.82 -92.71 -0.82 7.45 16 33 H 0.19 4.24 5.86 -2.91 -0.02 4.22 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.29 7.96 -2.39 -0.02 1.27 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.37 19.55 7.76 -92.70 -0.72 18.83 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 44 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 Total: -1.00 -75.11 373.59 0.80 -74.31 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.31 Total: 35.72 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.00 Total: 21.73 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -6.79 Total: -139.83 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.12 Total: -38.50 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.11 0.80 -74.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019064212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.847 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds