Wall clock time and date at job start Tue Mar 31 2020 12:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00316 * 2 1 4 4 H 1.48493 * 109.47074 * 269.99824 * 3 2 1 5 5 H 1.48504 * 109.46998 * 29.99752 * 3 2 1 6 6 H 1.48498 * 109.47045 * 149.99496 * 3 2 1 7 7 C 1.38818 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99918 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99978 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.88857 * 34.29511 * 10 9 7 12 12 C 1.55154 * 111.00420 * 158.17667 * 10 9 7 13 13 C 1.54327 * 102.94290 * 153.61252 * 12 10 9 14 14 N 1.47029 * 107.26790 * 337.80696 * 13 12 10 15 15 C 1.34773 * 125.64802 * 178.99157 * 14 13 12 16 16 O 1.21599 * 120.00500 * 179.97438 * 15 14 13 17 17 C 1.47433 * 119.99910 * 359.96856 * 15 14 13 18 18 C 1.38041 * 126.41376 * 359.69075 * 17 15 14 19 19 N 1.34262 * 107.41628 * 179.86771 * 18 17 15 20 20 H 0.97002 * 125.75696 * 180.18006 * 19 18 17 21 21 N 1.39938 * 108.49458 * 0.39959 * 19 18 17 22 22 C 1.30454 * 108.89297 * 359.74898 * 21 19 18 23 23 C 1.50695 * 125.98639 * 180.02562 * 22 21 19 24 24 H 1.09006 * 110.74874 * 179.29519 * 23 22 21 25 25 C 1.55306 * 110.85021 * 302.76620 * 23 22 21 26 26 C 1.55202 * 100.82741 * 152.18240 * 25 23 22 27 27 O 1.43657 * 105.25886 * 323.81688 * 26 25 23 28 28 C 1.43237 * 109.97043 * 24.28964 * 27 26 25 29 29 C 1.47418 * 108.70495 * 358.93814 * 14 13 12 30 30 H 0.97006 * 120.00093 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99970 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.72212 * 271.97275 * 12 10 9 33 33 H 1.08997 * 110.72125 * 35.07297 * 12 10 9 34 34 H 1.08993 * 109.88730 * 97.22288 * 13 12 10 35 35 H 1.09003 * 109.88555 * 218.39558 * 13 12 10 36 36 H 1.07995 * 126.29560 * 0.02572 * 18 17 15 37 37 H 1.09000 * 111.12498 * 270.24992 * 25 23 22 38 38 H 1.08997 * 111.11894 * 34.40735 * 25 23 22 39 39 H 1.08996 * 110.37146 * 204.80374 * 26 25 23 40 40 H 1.08996 * 110.21248 * 82.75323 * 26 25 23 41 41 H 1.09001 * 109.82797 * 238.77444 * 28 27 26 42 42 H 1.08991 * 109.90966 * 117.84225 * 28 27 26 43 43 H 1.08995 * 110.37279 * 265.29528 * 29 14 13 44 44 H 1.08997 * 110.36990 * 142.96726 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9804 -3.5725 0.5762 12 6 1.1710 -4.8105 0.5400 13 6 1.7760 -6.0573 -0.1391 14 7 2.4961 -5.5966 -1.3354 15 6 3.1796 -6.3814 -2.1916 16 8 3.7393 -5.8897 -3.1527 17 6 3.2490 -7.8363 -1.9630 18 6 2.6721 -8.5300 -0.9182 19 7 2.9714 -9.8283 -1.0840 20 1 2.6959 -10.5525 -0.5005 21 7 3.7522 -9.9600 -2.2378 22 6 3.9235 -8.7807 -2.7688 23 6 4.7037 -8.4789 -4.0223 24 1 4.6755 -7.4127 -4.2474 25 6 6.1687 -8.9784 -3.8953 26 6 6.5150 -9.2476 -5.3841 27 8 5.3039 -9.7529 -5.9686 28 6 4.1723 -9.3059 -5.2127 29 6 2.3455 -4.1341 -1.4438 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 1.2513 -4.8850 1.6245 33 1 0.1324 -4.6706 0.2403 34 1 2.4679 -6.5518 0.5425 35 1 0.9809 -6.7451 -0.4271 36 1 2.0854 -8.1067 -0.1164 37 1 6.8117 -8.2066 -3.4724 38 1 6.2214 -9.8957 -3.3090 39 1 7.3101 -9.9892 -5.4606 40 1 6.8140 -8.3213 -5.8746 41 1 3.6107 -10.1647 -4.8449 42 1 3.5306 -8.6847 -5.8374 43 1 1.5101 -3.8862 -2.0984 44 1 3.2662 -3.6845 -1.8155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019196830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:40 Heat of formation + Delta-G solvation = 18.119494 kcal Electronic energy + Delta-G solvation = -26896.611987 eV Core-core repulsion = 23044.200254 eV Total energy + Delta-G solvation = -3852.411733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79754 -39.45506 -39.24842 -37.21809 -34.28743 -33.67760 -31.86316 -30.87592 -30.50743 -29.73342 -29.07638 -27.42436 -24.57771 -23.61503 -23.16693 -22.44756 -21.68819 -20.52876 -19.85669 -19.57340 -17.77364 -17.17381 -16.65917 -16.53243 -16.17865 -16.05182 -15.26541 -15.02144 -14.90155 -14.44564 -14.03777 -13.89796 -13.66594 -13.50953 -13.34551 -13.11740 -12.81962 -12.49683 -12.24503 -12.03119 -11.82802 -11.61076 -11.44085 -11.26419 -11.15055 -10.96413 -10.84737 -10.76154 -10.37943 -10.09053 -9.86723 -9.81960 -9.66054 -9.52898 -9.05844 -9.04347 -8.37353 -7.11946 -5.87259 -3.18141 1.29234 1.89004 2.38085 3.21003 3.39987 3.45402 3.46015 3.46616 3.71072 4.14812 4.31839 4.45738 4.51117 4.67431 4.78692 4.81559 4.88028 5.03453 5.07511 5.12472 5.19999 5.23635 5.36698 5.42686 5.51945 5.62446 5.64193 5.69595 5.71810 5.76411 5.86306 6.02615 6.06739 6.15876 6.20112 6.31225 6.49353 6.59178 6.78133 6.82773 6.84108 7.24694 7.63038 7.76565 8.30096 8.40017 9.42485 9.94938 10.29620 11.34731 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002753 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.346942 B =10166.699252 C =11203.699067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.142 4.142 13 C 0.097 3.903 14 N -0.609 5.609 15 C 0.602 3.398 16 O -0.545 6.545 17 C -0.274 4.274 18 C 0.091 3.909 19 N -0.462 5.462 20 H 0.444 0.556 21 N -0.294 5.294 22 C 0.144 3.856 23 C -0.056 4.056 24 H 0.133 0.867 25 C -0.144 4.144 26 C 0.052 3.948 27 O -0.384 6.384 28 C 0.064 3.936 29 C 0.084 3.916 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.198 0.802 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -22.240 -0.948 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.181 4.181 13 C -0.027 4.027 14 N -0.343 5.343 15 C 0.391 3.609 16 O -0.424 6.424 17 C -0.289 4.289 18 C -0.061 4.061 19 N -0.167 5.167 20 H 0.289 0.711 21 N -0.116 5.116 22 C -0.025 4.025 23 C -0.077 4.077 24 H 0.151 0.849 25 C -0.182 4.182 26 C -0.024 4.024 27 O -0.303 6.303 28 C -0.013 4.013 29 C -0.041 4.041 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.215 0.785 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.788 -23.199 -1.760 24.236 hybrid contribution -0.409 1.498 0.796 1.745 sum 6.379 -21.701 -0.965 22.640 Atomic orbital electron populations 1.69654 1.05181 1.25971 1.56953 1.24770 0.95531 0.97876 1.02292 0.86170 0.78684 0.83528 0.77680 1.21506 1.21716 1.20619 1.19257 0.91148 0.83866 1.43705 0.90899 1.42300 1.05793 0.99390 1.87623 1.21316 0.94878 0.86053 0.91800 0.91584 1.22947 1.00726 0.94047 1.00359 1.22288 0.95195 0.98117 0.87098 1.48333 1.51086 1.09398 1.25450 1.16861 0.78157 0.84109 0.81752 1.90697 1.47011 1.75010 1.29699 1.20318 1.12695 0.95004 1.00837 1.23995 0.97967 0.84711 0.99381 1.46130 1.41060 1.07545 1.21936 0.71127 1.77091 1.14544 1.21716 0.98222 1.21906 0.95584 0.89077 0.95894 1.21553 0.93035 1.04049 0.89036 0.84913 1.23363 0.94915 1.02403 0.97554 1.23416 0.87915 0.99301 0.91769 1.88385 1.14523 1.74386 1.53004 1.23157 0.89025 0.97727 0.91397 1.23427 1.02053 0.76759 1.01896 0.93321 0.77849 0.90109 0.90270 0.91555 0.91664 0.78536 0.89403 0.89984 0.89663 0.91767 0.90977 0.90860 0.91377 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.58 5.26 -51.35 -0.27 -16.85 16 10 C 0.17 3.10 3.70 -65.78 -0.24 2.86 16 11 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 12 C -0.14 -1.88 6.59 -24.90 -0.16 -2.04 16 13 C 0.10 1.05 4.99 -3.06 -0.02 1.03 16 14 N -0.61 -9.05 3.33 -171.78 -0.57 -9.62 16 15 C 0.60 9.49 7.85 -12.52 -0.10 9.39 16 16 O -0.55 -10.29 14.86 5.28 0.08 -10.21 16 17 C -0.27 -3.48 6.10 -105.06 -0.64 -4.12 16 18 C 0.09 0.80 10.50 -16.56 -0.17 0.63 16 19 N -0.46 -3.70 7.29 30.85 0.22 -3.48 16 20 H 0.44 1.83 8.96 -182.72 -1.64 0.19 16 21 N -0.29 -3.35 12.27 33.90 0.42 -2.93 16 22 C 0.14 1.81 5.82 -82.02 -0.48 1.33 16 23 C -0.06 -0.69 3.34 -89.83 -0.30 -0.99 16 24 H 0.13 1.88 5.72 -51.93 -0.30 1.59 16 25 C -0.14 -1.48 6.63 -24.34 -0.16 -1.64 16 26 C 0.05 0.52 7.78 38.32 0.30 0.81 16 27 O -0.38 -4.81 11.36 -35.23 -0.40 -5.21 16 28 C 0.06 0.77 7.40 37.88 0.28 1.05 16 29 C 0.08 1.50 6.60 -2.53 -0.02 1.49 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 31 H 0.39 9.53 7.73 -40.82 -0.32 9.21 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.08 7.99 -51.93 -0.42 0.67 16 34 H 0.07 0.56 6.83 -51.93 -0.35 0.20 16 35 H 0.07 0.56 7.03 -51.93 -0.36 0.20 16 36 H 0.20 1.11 4.42 -52.49 -0.23 0.88 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.86 7.61 -51.93 -0.40 0.47 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -33.55 356.41 -8.75 -42.30 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.35 Total: 7.43 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.96 Total: 2.73 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.52 Total: -59.18 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.32 Total: -15.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.55 -8.75 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019196830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.420 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds