Wall clock time and date at job start Tue Mar 31 2020 12:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00316 * 2 1 4 4 H 1.48493 * 109.47074 * 269.99824 * 3 2 1 5 5 H 1.48504 * 109.46998 * 29.99752 * 3 2 1 6 6 H 1.48498 * 109.47045 * 149.99496 * 3 2 1 7 7 C 1.38818 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99918 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99978 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.88857 * 34.29511 * 10 9 7 12 12 C 1.55154 * 111.00420 * 158.17667 * 10 9 7 13 13 C 1.54327 * 102.94290 * 153.61252 * 12 10 9 14 14 N 1.47029 * 107.26790 * 337.80696 * 13 12 10 15 15 C 1.34773 * 125.64802 * 178.99157 * 14 13 12 16 16 O 1.21599 * 120.00500 * 179.97438 * 15 14 13 17 17 C 1.47433 * 119.99910 * 359.96856 * 15 14 13 18 18 C 1.38041 * 126.41376 * 359.69075 * 17 15 14 19 19 N 1.34262 * 107.41628 * 179.86771 * 18 17 15 20 20 H 0.97002 * 125.75696 * 180.18006 * 19 18 17 21 21 N 1.39938 * 108.49458 * 0.39959 * 19 18 17 22 22 C 1.30454 * 108.89297 * 359.74898 * 21 19 18 23 23 C 1.50695 * 125.98639 * 180.02562 * 22 21 19 24 24 H 1.09006 * 110.74874 * 179.29519 * 23 22 21 25 25 C 1.55306 * 110.85021 * 302.76620 * 23 22 21 26 26 C 1.55202 * 100.82741 * 152.18240 * 25 23 22 27 27 O 1.43657 * 105.25886 * 323.81688 * 26 25 23 28 28 C 1.43237 * 109.97043 * 24.28964 * 27 26 25 29 29 C 1.47418 * 108.70495 * 358.93814 * 14 13 12 30 30 H 0.97006 * 120.00093 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99970 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.72212 * 271.97275 * 12 10 9 33 33 H 1.08997 * 110.72125 * 35.07297 * 12 10 9 34 34 H 1.08993 * 109.88730 * 97.22288 * 13 12 10 35 35 H 1.09003 * 109.88555 * 218.39558 * 13 12 10 36 36 H 1.07995 * 126.29560 * 0.02572 * 18 17 15 37 37 H 1.09000 * 111.12498 * 270.24992 * 25 23 22 38 38 H 1.08997 * 111.11894 * 34.40735 * 25 23 22 39 39 H 1.08996 * 110.37146 * 204.80374 * 26 25 23 40 40 H 1.08996 * 110.21248 * 82.75323 * 26 25 23 41 41 H 1.09001 * 109.82797 * 238.77444 * 28 27 26 42 42 H 1.08991 * 109.90966 * 117.84225 * 28 27 26 43 43 H 1.08995 * 110.37279 * 265.29528 * 29 14 13 44 44 H 1.08997 * 110.36990 * 142.96726 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9804 -3.5725 0.5762 12 6 1.1710 -4.8105 0.5400 13 6 1.7760 -6.0573 -0.1391 14 7 2.4961 -5.5966 -1.3354 15 6 3.1796 -6.3814 -2.1916 16 8 3.7393 -5.8897 -3.1527 17 6 3.2490 -7.8363 -1.9630 18 6 2.6721 -8.5300 -0.9182 19 7 2.9714 -9.8283 -1.0840 20 1 2.6959 -10.5525 -0.5005 21 7 3.7522 -9.9600 -2.2378 22 6 3.9235 -8.7807 -2.7688 23 6 4.7037 -8.4789 -4.0223 24 1 4.6755 -7.4127 -4.2474 25 6 6.1687 -8.9784 -3.8953 26 6 6.5150 -9.2476 -5.3841 27 8 5.3039 -9.7529 -5.9686 28 6 4.1723 -9.3059 -5.2127 29 6 2.3455 -4.1341 -1.4438 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 1.2513 -4.8850 1.6245 33 1 0.1324 -4.6706 0.2403 34 1 2.4679 -6.5518 0.5425 35 1 0.9809 -6.7451 -0.4271 36 1 2.0854 -8.1067 -0.1164 37 1 6.8117 -8.2066 -3.4724 38 1 6.2214 -9.8957 -3.3090 39 1 7.3101 -9.9892 -5.4606 40 1 6.8140 -8.3213 -5.8746 41 1 3.6107 -10.1647 -4.8449 42 1 3.5306 -8.6847 -5.8374 43 1 1.5101 -3.8862 -2.0984 44 1 3.2662 -3.6845 -1.8155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019196830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:39 Heat of formation + Delta-G solvation = -7.282593 kcal Electronic energy + Delta-G solvation = -26897.713504 eV Core-core repulsion = 23044.200254 eV Total energy + Delta-G solvation = -3853.513250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65111 -40.62411 -40.15335 -38.52756 -35.97325 -34.59205 -33.47011 -31.79108 -31.60823 -31.02425 -29.94699 -28.84511 -26.10553 -24.80934 -24.33475 -23.28790 -22.66895 -21.80207 -21.01777 -20.45038 -19.38429 -18.41103 -17.70979 -17.50752 -17.35461 -17.04658 -16.39965 -16.33798 -15.87543 -15.78802 -15.37980 -15.05368 -14.95898 -14.54977 -14.52563 -14.23610 -14.15703 -13.72242 -13.65821 -13.07914 -12.91283 -12.86683 -12.71375 -12.47818 -12.34432 -12.29099 -12.09987 -12.08005 -11.87083 -11.73953 -11.55753 -11.00860 -10.82977 -10.67450 -10.43852 -9.97252 -9.57148 -9.05519 -7.96776 -5.25978 0.50221 0.93804 1.48213 1.50105 1.57501 1.68275 2.07948 2.36421 2.56504 2.85522 3.28977 3.35959 3.50355 3.58572 3.66236 3.81043 3.93273 4.02150 4.04635 4.20027 4.25083 4.28023 4.31899 4.36388 4.39261 4.51346 4.58760 4.67354 4.70752 4.81767 4.87021 4.89378 4.90636 5.04326 5.12539 5.23885 5.27222 5.30296 5.40788 5.54622 5.93724 6.21800 6.25710 6.43876 6.64449 7.22219 7.33117 8.05529 8.28792 9.25904 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002753 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.346942 B =10166.699252 C =11203.699067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.723 5.723 10 C 0.164 3.836 11 H 0.064 0.936 12 C -0.129 4.129 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.597 3.403 16 O -0.591 6.591 17 C -0.309 4.309 18 C 0.128 3.872 19 N -0.440 5.440 20 H 0.464 0.536 21 N -0.308 5.308 22 C 0.133 3.867 23 C -0.060 4.060 24 H 0.107 0.893 25 C -0.136 4.136 26 C 0.049 3.951 27 O -0.401 6.401 28 C 0.068 3.932 29 C 0.095 3.905 30 H 0.252 0.748 31 H 0.378 0.622 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.237 0.763 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -24.815 1.030 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.362 5.362 10 C 0.053 3.947 11 H 0.082 0.918 12 C -0.168 4.168 13 C -0.028 4.028 14 N -0.342 5.342 15 C 0.388 3.612 16 O -0.473 6.473 17 C -0.324 4.324 18 C -0.026 4.026 19 N -0.146 5.146 20 H 0.313 0.687 21 N -0.130 5.130 22 C -0.035 4.035 23 C -0.080 4.080 24 H 0.126 0.874 25 C -0.174 4.174 26 C -0.027 4.027 27 O -0.321 6.321 28 C -0.009 4.009 29 C -0.031 4.031 30 H 0.061 0.939 31 H 0.211 0.789 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.253 0.747 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.085 -25.866 0.253 26.820 hybrid contribution -0.468 2.186 0.185 2.244 sum 6.617 -23.680 0.438 24.591 Atomic orbital electron populations 1.69785 1.06430 1.26158 1.59098 1.25493 0.96332 1.00891 1.03423 0.85232 0.77923 0.79897 0.77270 1.21891 1.22012 1.19365 1.19595 0.91413 0.85230 1.41502 0.90808 1.42430 1.05542 1.00478 1.87751 1.21498 0.95597 0.85746 0.91827 0.91794 1.22877 0.99453 0.92510 1.01926 1.22631 0.96654 0.97601 0.85878 1.48307 1.51470 1.07685 1.26760 1.17343 0.77341 0.85427 0.81042 1.90675 1.48926 1.76083 1.31660 1.20114 1.15707 0.93207 1.03322 1.24370 0.95743 0.84253 0.98232 1.46170 1.39360 1.08178 1.20930 0.68654 1.77057 1.15448 1.21067 0.99450 1.21895 0.95934 0.89574 0.96063 1.21434 0.94502 1.02559 0.89531 0.87448 1.23318 0.93756 1.02452 0.97898 1.23595 0.87517 1.00211 0.91356 1.88354 1.15377 1.74700 1.53649 1.23093 0.88994 0.97535 0.91261 1.22945 0.99588 0.79387 1.01190 0.93911 0.78881 0.87649 0.90658 0.87702 0.88083 0.74710 0.88951 0.89726 0.87479 0.91383 0.90917 0.91349 0.93697 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.18 13.06 21.65 0.28 -56.90 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 3 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.25 -13.16 9.97 84.04 0.84 -12.33 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -34.06 5.26 -316.37 -1.66 -35.72 16 10 C 0.16 5.82 3.70 46.38 0.17 5.99 16 11 H 0.06 2.31 8.11 -2.39 -0.02 2.29 16 12 C -0.13 -3.03 6.59 31.78 0.21 -2.82 16 13 C 0.09 1.63 4.99 86.73 0.43 2.06 16 14 N -0.61 -17.31 3.33 -815.66 -2.71 -20.02 16 15 C 0.60 18.58 7.85 86.67 0.68 19.26 16 16 O -0.59 -23.35 14.86 -4.03 -0.06 -23.41 16 17 C -0.31 -7.21 6.10 -20.15 -0.12 -7.34 16 18 C 0.13 1.64 10.50 84.27 0.88 2.53 16 19 N -0.44 -5.15 7.29 -56.32 -0.41 -5.56 16 20 H 0.46 1.50 8.96 -213.42 -1.91 -0.42 16 21 N -0.31 -6.25 12.27 -46.67 -0.57 -6.82 16 22 C 0.13 3.20 5.82 43.51 0.25 3.45 16 23 C -0.06 -1.49 3.34 -10.28 -0.03 -1.52 16 24 H 0.11 3.25 5.72 -2.38 -0.01 3.23 16 25 C -0.14 -2.73 6.63 32.14 0.21 -2.52 16 26 C 0.05 0.94 7.78 72.74 0.57 1.50 16 27 O -0.40 -9.98 11.36 -148.98 -1.69 -11.67 16 28 C 0.07 1.66 7.40 72.45 0.54 2.19 16 29 C 0.10 3.50 6.60 86.86 0.57 4.07 16 30 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 31 H 0.38 18.93 7.73 -92.71 -0.72 18.22 16 32 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.87 7.99 -2.39 -0.02 1.85 16 34 H 0.11 1.10 6.83 -2.39 -0.02 1.08 16 35 H 0.10 1.13 7.03 -2.39 -0.02 1.11 16 36 H 0.24 1.02 4.42 -2.91 -0.01 1.01 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.65 7.93 -2.39 -0.02 1.63 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.72 7.61 -2.39 -0.02 1.70 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.04 1.80 8.04 -2.39 -0.02 1.78 16 Total: -1.00 -77.10 356.41 -0.71 -77.81 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -1.57 Total: 23.69 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.67 Total: 11.17 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.08 Total: -125.02 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.75 Total: -35.08 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.10 -0.71 -77.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019196830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.528 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds