Wall clock time and date at job start Tue Mar 31 2020 12:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00185 * 2 1 4 4 H 1.48497 * 109.46879 * 240.00066 * 3 2 1 5 5 H 1.48500 * 109.46834 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47188 * 120.00000 * 3 2 1 7 7 C 1.38818 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99326 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99846 * 180.27582 * 9 7 2 11 11 H 1.09000 * 110.64237 * 36.40692 * 10 9 7 12 12 C 1.55154 * 110.72036 * 159.74686 * 10 9 7 13 13 C 1.54904 * 101.58142 * 153.86027 * 12 10 9 14 14 N 1.47417 * 104.83570 * 322.99395 * 13 12 10 15 15 C 1.34775 * 125.64938 * 204.09222 * 14 13 12 16 16 O 1.21605 * 120.00334 * 174.63170 * 15 14 13 17 17 C 1.47432 * 120.00262 * 354.63103 * 15 14 13 18 18 C 1.38045 * 126.41021 * 335.34228 * 17 15 14 19 19 N 1.34262 * 107.41803 * 179.86935 * 18 17 15 20 20 H 0.96994 * 125.75471 * 180.14555 * 19 18 17 21 21 N 1.39938 * 108.48793 * 0.39495 * 19 18 17 22 22 C 1.30456 * 108.89949 * 359.74867 * 21 19 18 23 23 C 1.50692 * 125.98825 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.86864 * 164.04079 * 23 22 21 25 25 C 1.54102 * 109.87874 * 285.03960 * 23 22 21 26 26 C 1.54814 * 104.18578 * 121.45694 * 25 23 22 27 27 C 1.54995 * 102.09234 * 20.88200 * 26 25 23 28 28 O 1.43739 * 109.88286 * 42.87036 * 23 22 21 29 29 C 1.47018 * 108.70388 * 24.12446 * 14 13 12 30 30 H 0.97003 * 119.99955 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00123 * 359.97438 * 9 7 2 32 32 H 1.08996 * 111.00207 * 271.94039 * 12 10 9 33 33 H 1.09003 * 111.00299 * 35.78940 * 12 10 9 34 34 H 1.08997 * 110.36971 * 204.14994 * 13 12 10 35 35 H 1.09011 * 110.45791 * 81.87882 * 13 12 10 36 36 H 1.07998 * 126.29069 * 0.02562 * 18 17 15 37 37 H 1.08997 * 110.49098 * 240.13287 * 25 23 22 38 38 H 1.09002 * 110.48932 * 2.78258 * 25 23 22 39 39 H 1.09000 * 110.90709 * 139.08475 * 26 25 23 40 40 H 1.09006 * 110.90700 * 262.68342 * 26 25 23 41 41 H 1.08996 * 110.61745 * 81.47597 * 27 26 25 42 42 H 1.09001 * 110.61396 * 204.31581 * 27 26 25 43 43 H 1.09000 * 109.88293 * 239.52902 * 29 14 13 44 44 H 1.09004 * 109.88554 * 118.36094 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0072 11 1 2.9583 -3.5776 0.6165 12 6 1.1511 -4.8117 0.5085 13 6 1.8012 -6.0383 -0.1787 14 7 2.2233 -5.5490 -1.5037 15 6 2.4092 -6.3108 -2.5998 16 8 2.6646 -5.7880 -3.6676 17 6 2.3031 -7.7782 -2.5043 18 6 2.4941 -8.5415 -1.3701 19 7 2.3015 -9.8254 -1.7125 20 1 2.3679 -10.5872 -1.1158 21 7 1.9946 -9.8796 -3.0767 22 6 1.9928 -8.6670 -3.5579 23 6 1.7100 -8.2819 -4.9871 24 1 1.4988 -7.2142 -5.0482 25 6 2.9227 -8.6276 -5.8727 26 6 2.3525 -9.5994 -6.9344 27 6 0.8363 -9.2815 -6.8845 28 8 0.5901 -9.0339 -5.4836 29 6 2.4088 -4.0923 -1.4312 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.1972 -4.9017 1.5937 33 1 0.1231 -4.6750 0.1727 34 1 1.0738 -6.8430 -0.2856 35 1 2.6644 -6.3815 0.3917 36 1 2.7489 -8.1734 -0.3873 37 1 3.3155 -7.7295 -6.3494 38 1 3.6978 -9.1181 -5.2838 39 1 2.7631 -9.3826 -7.9206 40 1 2.5420 -10.6358 -6.6549 41 1 0.6104 -8.3946 -7.4765 42 1 0.2537 -10.1338 -7.2343 43 1 1.7446 -3.5983 -2.1404 44 1 3.4456 -3.8391 -1.6527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019279881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:00 Heat of formation + Delta-G solvation = 15.657626 kcal Electronic energy + Delta-G solvation = -26996.576139 eV Core-core repulsion = 23144.057651 eV Total energy + Delta-G solvation = -3852.518487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68402 -39.38306 -39.22151 -37.13494 -34.15503 -32.75726 -32.05277 -31.77054 -30.41529 -29.61391 -28.79366 -27.34756 -24.48361 -23.74474 -23.10624 -21.81908 -21.78755 -20.56918 -19.83252 -19.48931 -17.80468 -17.13340 -16.52682 -16.46362 -16.17446 -16.05422 -15.30157 -14.99591 -14.89498 -14.45889 -13.82416 -13.74526 -13.72266 -13.44447 -13.28752 -13.01286 -12.68995 -12.49476 -11.96665 -11.86328 -11.79884 -11.56511 -11.43475 -11.16187 -11.05239 -10.89931 -10.82276 -10.74428 -10.36114 -10.09431 -10.00992 -9.80462 -9.73992 -9.54943 -8.99138 -8.96207 -8.27792 -7.08251 -5.82958 -3.13893 1.38466 1.98303 2.46027 3.21556 3.42168 3.45131 3.47460 3.48407 3.80324 4.20390 4.41321 4.53802 4.55970 4.68861 4.78859 4.88512 4.91257 5.00758 5.14875 5.21707 5.26572 5.33339 5.43831 5.48287 5.53507 5.60974 5.71335 5.72336 5.73200 5.84270 5.91836 5.95679 6.08661 6.14669 6.29761 6.36957 6.53203 6.72126 6.72807 6.88191 6.89738 7.35320 7.65141 7.82948 8.34353 8.45794 9.46372 9.99859 10.34411 11.39019 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002818 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.773479 B = 9933.784388 C =10781.669134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.098 3.902 14 N -0.609 5.609 15 C 0.601 3.399 16 O -0.543 6.543 17 C -0.268 4.268 18 C 0.098 3.902 19 N -0.464 5.464 20 H 0.443 0.557 21 N -0.274 5.274 22 C 0.130 3.870 23 C 0.154 3.846 24 H 0.107 0.893 25 C -0.138 4.138 26 C -0.153 4.153 27 C 0.046 3.954 28 O -0.366 6.366 29 C 0.084 3.916 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.190 0.810 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 -23.107 -4.777 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.090 0.910 9 N -0.353 5.353 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.025 4.025 14 N -0.342 5.342 15 C 0.389 3.611 16 O -0.422 6.422 17 C -0.283 4.283 18 C -0.054 4.054 19 N -0.169 5.169 20 H 0.288 0.712 21 N -0.097 5.097 22 C -0.039 4.039 23 C 0.095 3.905 24 H 0.125 0.875 25 C -0.177 4.177 26 C -0.191 4.191 27 C -0.031 4.031 28 O -0.285 6.285 29 C -0.041 4.041 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.207 0.793 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.841 -23.961 -5.540 25.065 hybrid contribution 0.530 1.393 0.593 1.604 sum 5.370 -22.567 -4.947 23.719 Atomic orbital electron populations 1.69650 1.05175 1.26041 1.56865 1.24773 0.95519 0.97850 1.02354 0.86250 0.78562 0.83318 0.77937 1.21075 1.21652 1.21176 1.19205 0.91075 0.83939 1.43791 0.90983 1.42364 1.05820 0.99412 1.87712 1.21212 0.94754 0.86357 0.91698 0.91682 1.23060 1.00438 0.94175 1.00249 1.22444 0.98247 0.97985 0.83844 1.48365 1.67001 1.09343 1.09528 1.16881 0.76924 0.84377 0.82890 1.90746 1.49953 1.74154 1.27320 1.20237 1.20315 0.94577 0.93190 1.23392 0.97505 0.84655 0.99825 1.46184 1.54386 1.07400 1.08915 0.71198 1.77197 1.22896 1.20857 0.88755 1.22154 0.96706 0.89376 0.95668 1.21197 0.86636 0.96889 0.85812 0.87524 1.22887 0.97688 1.00327 0.96785 1.23142 0.96040 1.00385 0.99536 1.23558 0.95424 1.00868 0.83204 1.88936 1.41164 1.75023 1.23356 1.23238 1.01219 0.77445 1.02176 0.93287 0.77840 0.90002 0.90379 0.91019 0.91707 0.79313 0.89533 0.90512 0.90063 0.90489 0.91842 0.88929 0.90753 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.68 9.98 -15.06 -0.15 -6.83 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.71 -17.05 5.18 -51.65 -0.27 -17.32 16 10 C 0.17 3.16 3.59 -66.10 -0.24 2.93 16 11 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 12 C -0.14 -1.99 6.69 -24.59 -0.16 -2.16 16 13 C 0.10 1.15 5.20 -2.54 -0.01 1.14 16 14 N -0.61 -9.52 3.33 -171.79 -0.57 -10.09 16 15 C 0.60 10.00 7.71 -12.52 -0.10 9.91 16 16 O -0.54 -10.77 15.61 5.27 0.08 -10.69 16 17 C -0.27 -3.68 5.79 -105.07 -0.61 -4.29 16 18 C 0.10 0.93 10.20 -16.56 -0.17 0.76 16 19 N -0.46 -4.14 7.29 30.85 0.22 -3.92 16 20 H 0.44 2.16 8.96 -182.73 -1.64 0.52 16 21 N -0.27 -3.55 12.63 33.89 0.43 -3.12 16 22 C 0.13 1.84 5.94 -82.02 -0.49 1.35 16 23 C 0.15 2.14 3.60 -27.31 -0.10 2.04 16 24 H 0.11 1.67 6.56 -51.93 -0.34 1.33 16 25 C -0.14 -1.55 6.63 -25.20 -0.17 -1.72 16 26 C -0.15 -1.36 7.15 -24.72 -0.18 -1.54 16 27 C 0.05 0.45 7.72 38.21 0.29 0.75 16 28 O -0.37 -5.11 11.17 -35.23 -0.39 -5.50 16 29 C 0.08 1.57 6.63 -3.07 -0.02 1.55 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 9.88 7.71 -40.82 -0.31 9.57 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.20 8.00 -51.93 -0.42 0.79 16 34 H 0.07 0.72 6.92 -51.93 -0.36 0.36 16 35 H 0.06 0.57 7.29 -51.92 -0.38 0.19 16 36 H 0.19 1.13 5.92 -52.49 -0.31 0.82 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -34.74 359.80 -9.06 -43.81 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.50 Total: 7.66 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.19 Total: 3.56 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.54 Total: -61.24 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.31 Total: -16.19 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.74 -9.06 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019279881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.465 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds