Wall clock time and date at job start Tue Mar 31 2020 12:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00185 * 2 1 4 4 H 1.48497 * 109.46879 * 240.00066 * 3 2 1 5 5 H 1.48500 * 109.46834 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47188 * 120.00000 * 3 2 1 7 7 C 1.38818 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99326 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99846 * 180.27582 * 9 7 2 11 11 H 1.09000 * 110.64237 * 36.40692 * 10 9 7 12 12 C 1.55154 * 110.72036 * 159.74686 * 10 9 7 13 13 C 1.54904 * 101.58142 * 153.86027 * 12 10 9 14 14 N 1.47417 * 104.83570 * 322.99395 * 13 12 10 15 15 C 1.34775 * 125.64938 * 204.09222 * 14 13 12 16 16 O 1.21605 * 120.00334 * 174.63170 * 15 14 13 17 17 C 1.47432 * 120.00262 * 354.63103 * 15 14 13 18 18 C 1.38045 * 126.41021 * 335.34228 * 17 15 14 19 19 N 1.34262 * 107.41803 * 179.86935 * 18 17 15 20 20 H 0.96994 * 125.75471 * 180.14555 * 19 18 17 21 21 N 1.39938 * 108.48793 * 0.39495 * 19 18 17 22 22 C 1.30456 * 108.89949 * 359.74867 * 21 19 18 23 23 C 1.50692 * 125.98825 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.86864 * 164.04079 * 23 22 21 25 25 C 1.54102 * 109.87874 * 285.03960 * 23 22 21 26 26 C 1.54814 * 104.18578 * 121.45694 * 25 23 22 27 27 C 1.54995 * 102.09234 * 20.88200 * 26 25 23 28 28 O 1.43739 * 109.88286 * 42.87036 * 23 22 21 29 29 C 1.47018 * 108.70388 * 24.12446 * 14 13 12 30 30 H 0.97003 * 119.99955 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00123 * 359.97438 * 9 7 2 32 32 H 1.08996 * 111.00207 * 271.94039 * 12 10 9 33 33 H 1.09003 * 111.00299 * 35.78940 * 12 10 9 34 34 H 1.08997 * 110.36971 * 204.14994 * 13 12 10 35 35 H 1.09011 * 110.45791 * 81.87882 * 13 12 10 36 36 H 1.07998 * 126.29069 * 0.02562 * 18 17 15 37 37 H 1.08997 * 110.49098 * 240.13287 * 25 23 22 38 38 H 1.09002 * 110.48932 * 2.78258 * 25 23 22 39 39 H 1.09000 * 110.90709 * 139.08475 * 26 25 23 40 40 H 1.09006 * 110.90700 * 262.68342 * 26 25 23 41 41 H 1.08996 * 110.61745 * 81.47597 * 27 26 25 42 42 H 1.09001 * 110.61396 * 204.31581 * 27 26 25 43 43 H 1.09000 * 109.88293 * 239.52902 * 29 14 13 44 44 H 1.09004 * 109.88554 * 118.36094 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0072 11 1 2.9583 -3.5776 0.6165 12 6 1.1511 -4.8117 0.5085 13 6 1.8012 -6.0383 -0.1787 14 7 2.2233 -5.5490 -1.5037 15 6 2.4092 -6.3108 -2.5998 16 8 2.6646 -5.7880 -3.6676 17 6 2.3031 -7.7782 -2.5043 18 6 2.4941 -8.5415 -1.3701 19 7 2.3015 -9.8254 -1.7125 20 1 2.3679 -10.5872 -1.1158 21 7 1.9946 -9.8796 -3.0767 22 6 1.9928 -8.6670 -3.5579 23 6 1.7100 -8.2819 -4.9871 24 1 1.4988 -7.2142 -5.0482 25 6 2.9227 -8.6276 -5.8727 26 6 2.3525 -9.5994 -6.9344 27 6 0.8363 -9.2815 -6.8845 28 8 0.5901 -9.0339 -5.4836 29 6 2.4088 -4.0923 -1.4312 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.1972 -4.9017 1.5937 33 1 0.1231 -4.6750 0.1727 34 1 1.0738 -6.8430 -0.2856 35 1 2.6644 -6.3815 0.3917 36 1 2.7489 -8.1734 -0.3873 37 1 3.3155 -7.7295 -6.3494 38 1 3.6978 -9.1181 -5.2838 39 1 2.7631 -9.3826 -7.9206 40 1 2.5420 -10.6358 -6.6549 41 1 0.6104 -8.3946 -7.4765 42 1 0.2537 -10.1338 -7.2343 43 1 1.7446 -3.5983 -2.1404 44 1 3.4456 -3.8391 -1.6527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019279881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:59 Heat of formation + Delta-G solvation = -11.083754 kcal Electronic energy + Delta-G solvation = -26997.735732 eV Core-core repulsion = 23144.057651 eV Total energy + Delta-G solvation = -3853.678081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61298 -40.61221 -40.16139 -38.51936 -35.91749 -33.68284 -33.44024 -32.90316 -31.65936 -30.95477 -29.68576 -28.82354 -26.09488 -24.72915 -24.50949 -22.85674 -22.60567 -21.80883 -21.03051 -20.55362 -19.33448 -18.56554 -17.74326 -17.41939 -17.29102 -17.05137 -16.51768 -16.27739 -16.08076 -15.78178 -15.32841 -15.09216 -14.79965 -14.59280 -14.55326 -14.20570 -13.93626 -13.67113 -13.40671 -13.08505 -12.84459 -12.75146 -12.72215 -12.47804 -12.40345 -12.22443 -12.12623 -11.99778 -11.73489 -11.70335 -11.56401 -11.09586 -10.95296 -10.85233 -10.54338 -9.95753 -9.53905 -9.07276 -7.95190 -5.25037 0.53129 0.93966 1.48629 1.51649 1.57175 1.69371 2.02996 2.28511 2.57485 2.91778 3.28116 3.36989 3.56867 3.66444 3.71299 3.87623 3.92825 3.95637 3.98430 4.14869 4.29474 4.34971 4.38778 4.39556 4.41685 4.55898 4.60577 4.71308 4.77901 4.83710 4.88857 4.94437 4.99596 5.05774 5.12212 5.16275 5.23357 5.34119 5.44259 5.54412 5.83414 6.23459 6.26570 6.45614 6.63414 7.20238 7.33305 8.06734 8.28795 9.27705 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002818 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.773479 B = 9933.784388 C =10781.669134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.727 5.727 10 C 0.166 3.834 11 H 0.078 0.922 12 C -0.131 4.131 13 C 0.100 3.900 14 N -0.609 5.609 15 C 0.596 3.404 16 O -0.591 6.591 17 C -0.305 4.305 18 C 0.138 3.862 19 N -0.440 5.440 20 H 0.464 0.536 21 N -0.294 5.294 22 C 0.114 3.886 23 C 0.150 3.850 24 H 0.075 0.925 25 C -0.136 4.136 26 C -0.142 4.142 27 C 0.037 3.963 28 O -0.391 6.391 29 C 0.096 3.904 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.029 0.971 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -25.852 -3.057 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.366 5.366 10 C 0.055 3.945 11 H 0.096 0.904 12 C -0.169 4.169 13 C -0.022 4.022 14 N -0.342 5.342 15 C 0.387 3.613 16 O -0.473 6.473 17 C -0.320 4.320 18 C -0.016 4.016 19 N -0.148 5.148 20 H 0.314 0.686 21 N -0.117 5.117 22 C -0.054 4.054 23 C 0.090 3.910 24 H 0.093 0.907 25 C -0.174 4.174 26 C -0.180 4.180 27 C -0.039 4.039 28 O -0.310 6.310 29 C -0.030 4.030 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.251 0.749 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.047 0.953 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.291 -26.802 -3.789 27.789 hybrid contribution 0.097 2.130 0.059 2.133 sum 6.387 -24.671 -3.730 25.756 Atomic orbital electron populations 1.69804 1.06624 1.26184 1.59224 1.25560 0.96325 1.01134 1.03518 0.85255 0.77243 0.79311 0.78220 1.20857 1.22369 1.19845 1.19619 0.91579 0.85122 1.41367 0.90283 1.42551 1.05489 1.00750 1.87800 1.21458 0.95812 0.85635 0.91548 0.90444 1.23012 0.98634 0.93138 1.02131 1.22780 1.00535 0.97259 0.81626 1.48364 1.66878 1.07800 1.11143 1.17361 0.75975 0.85722 0.82239 1.90713 1.52075 1.75289 1.29182 1.20053 1.24017 0.92857 0.95083 1.23868 0.93906 0.83892 0.99969 1.46204 1.52372 1.08260 1.07922 0.68643 1.77135 1.23671 1.20203 0.90725 1.22197 0.97298 0.90035 0.95849 1.21071 0.87616 0.95287 0.87049 0.90732 1.22853 0.96695 1.00810 0.97055 1.23122 0.95037 0.99906 0.99894 1.23829 0.96588 1.01943 0.81536 1.88895 1.41712 1.74910 1.25460 1.22787 0.99425 0.79653 1.01132 0.94008 0.79264 0.87106 0.92124 0.88470 0.87005 0.74857 0.89874 0.90809 0.87695 0.89956 0.91398 0.86934 0.95252 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.27 9.98 84.04 0.84 -12.43 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -35.29 5.18 -317.32 -1.64 -36.93 16 10 C 0.17 5.96 3.59 46.18 0.17 6.13 16 11 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 12 C -0.13 -3.37 6.69 31.98 0.21 -3.16 16 13 C 0.10 1.92 5.20 86.85 0.45 2.37 16 14 N -0.61 -18.43 3.33 -815.68 -2.71 -21.15 16 15 C 0.60 19.94 7.71 86.67 0.67 20.60 16 16 O -0.59 -24.80 15.61 -4.05 -0.06 -24.86 16 17 C -0.31 -7.93 5.79 -20.15 -0.12 -8.04 16 18 C 0.14 2.01 10.20 84.28 0.86 2.87 16 19 N -0.44 -6.15 7.29 -56.32 -0.41 -6.56 16 20 H 0.46 2.33 8.96 -213.43 -1.91 0.42 16 21 N -0.29 -7.06 12.63 -46.68 -0.59 -7.65 16 22 C 0.11 3.19 5.94 43.51 0.26 3.45 16 23 C 0.15 4.32 3.60 30.22 0.11 4.43 16 24 H 0.07 2.57 6.56 -2.39 -0.02 2.56 16 25 C -0.14 -3.09 6.63 31.59 0.21 -2.88 16 26 C -0.14 -2.38 7.15 31.90 0.23 -2.15 16 27 C 0.04 0.71 7.72 72.66 0.56 1.27 16 28 O -0.39 -11.11 11.17 -148.98 -1.66 -12.78 16 29 C 0.10 3.65 6.63 86.73 0.57 4.23 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.37 19.74 7.71 -92.71 -0.72 19.02 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 34 H 0.10 1.47 6.92 -2.39 -0.02 1.45 16 35 H 0.11 1.22 7.29 -2.38 -0.02 1.20 16 36 H 0.24 1.16 5.92 -2.91 -0.02 1.14 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.69 7.69 -2.39 -0.02 1.68 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 44 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -81.44 359.80 -0.86 -82.30 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -1.58 Total: 25.35 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.49 Total: 13.03 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -5.07 Total: -130.89 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.73 Total: -37.64 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -81.44 -0.86 -82.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019279881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.216 kcal (2) G-P(sol) polarization free energy of solvation -81.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds