Wall clock time and date at job start Tue Mar 31 2020 12:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99844 * 2 1 4 4 H 1.48504 * 109.47137 * 239.99889 * 3 2 1 5 5 H 1.48497 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46844 * 120.00104 * 3 2 1 7 7 C 1.38817 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99680 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00061 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99720 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.88837 * 37.43241 * 10 9 7 12 12 C 1.55160 * 111.03199 * 161.33214 * 10 9 7 13 13 C 1.54338 * 103.01607 * 153.39775 * 12 10 9 14 14 N 1.47020 * 107.26883 * 338.14034 * 13 12 10 15 15 C 1.34776 * 125.64906 * 178.85398 * 14 13 12 16 16 O 1.21606 * 119.99585 * 179.68933 * 15 14 13 17 17 C 1.47419 * 119.99931 * 359.68882 * 15 14 13 18 18 C 1.38038 * 126.41907 * 0.02644 * 17 15 14 19 19 N 1.34259 * 107.41876 * 179.97438 * 18 17 15 20 20 H 0.97005 * 125.75021 * 180.02562 * 19 18 17 21 21 N 1.39929 * 108.49356 * 359.79197 * 19 18 17 22 22 C 1.30444 * 108.89626 * 0.35951 * 21 19 18 23 23 C 1.50706 * 125.98949 * 179.91041 * 22 21 19 24 24 H 1.08999 * 109.98816 * 195.77929 * 23 22 21 25 25 C 1.54098 * 109.87782 * 74.69371 * 23 22 21 26 26 C 1.54813 * 104.30472 * 238.47971 * 25 23 22 27 27 C 1.55227 * 101.98357 * 339.26359 * 26 25 23 28 28 O 1.43744 * 109.87636 * 316.86197 * 23 22 21 29 29 C 1.47428 * 108.70216 * 358.58668 * 14 13 12 30 30 H 0.96996 * 119.99817 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99801 * 0.02562 * 9 7 2 32 32 H 1.09003 * 110.72008 * 271.95128 * 12 10 9 33 33 H 1.08990 * 110.72173 * 35.23024 * 12 10 9 34 34 H 1.08999 * 109.98817 * 218.66638 * 13 12 10 35 35 H 1.09000 * 109.77937 * 97.49988 * 13 12 10 36 36 H 1.08009 * 126.28912 * 359.96016 * 18 17 15 37 37 H 1.09002 * 110.48969 * 357.22307 * 25 23 22 38 38 H 1.09002 * 110.48612 * 119.73973 * 25 23 22 39 39 H 1.08999 * 110.90868 * 97.38351 * 26 25 23 40 40 H 1.09003 * 110.91016 * 220.99202 * 26 25 23 41 41 H 1.09002 * 110.51777 * 278.38206 * 27 26 25 42 42 H 1.09000 * 110.64403 * 155.43932 * 27 26 25 43 43 H 1.08995 * 110.36930 * 143.19313 * 29 14 13 44 44 H 1.09004 * 110.36663 * 265.51868 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 1 2.9533 -3.5887 0.6199 12 6 1.1488 -4.8249 0.4664 13 6 1.7812 -6.0529 -0.2221 14 7 2.5592 -5.5586 -1.3675 15 6 3.2823 -6.3194 -2.2129 16 8 3.8845 -5.8011 -3.1335 17 6 3.3432 -7.7799 -2.0216 18 6 2.7149 -8.5031 -1.0278 19 7 3.0274 -9.7957 -1.2127 20 1 2.7260 -10.5359 -0.6628 21 7 3.8567 -9.8957 -2.3353 22 6 4.0551 -8.7017 -2.8216 23 6 4.8917 -8.3650 -4.0291 24 1 5.1102 -7.2973 -4.0450 25 6 4.1419 -8.7658 -5.3143 26 6 5.0933 -9.7649 -6.0165 27 6 6.4603 -9.4187 -5.3676 28 8 6.1179 -9.1145 -3.9984 29 6 2.4123 -4.0936 -1.4418 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 1.1795 -4.9296 1.5509 33 1 0.1256 -4.6780 0.1209 34 1 0.9999 -6.7292 -0.5689 35 1 2.4384 -6.5700 0.4770 36 1 2.0875 -8.1027 -0.2451 37 1 3.1955 -9.2480 -5.0693 38 1 3.9723 -7.8930 -5.9449 39 1 4.8082 -10.7937 -5.7966 40 1 5.1158 -9.5903 -7.0922 41 1 6.9051 -8.5505 -5.8540 42 1 7.1351 -10.2734 -5.4137 43 1 3.3485 -3.6340 -1.7583 44 1 1.6073 -3.8274 -2.1270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019279882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:02 Heat of formation + Delta-G solvation = -5.930535 kcal Electronic energy + Delta-G solvation = -26958.296929 eV Core-core repulsion = 23104.842309 eV Total energy + Delta-G solvation = -3853.454620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63738 -40.62471 -40.13570 -38.52662 -35.95813 -33.67763 -33.46828 -32.88578 -31.68111 -31.04557 -29.65738 -28.81425 -26.11741 -24.81715 -24.51104 -22.72612 -22.60013 -21.87605 -21.15061 -20.65178 -19.36898 -18.40383 -17.72481 -17.40963 -17.26822 -17.03017 -16.40427 -16.34435 -16.13251 -15.77536 -15.35920 -14.99850 -14.85959 -14.57984 -14.52169 -14.27432 -13.95710 -13.70724 -13.63846 -13.05683 -12.84253 -12.74336 -12.72033 -12.43648 -12.34660 -12.19521 -12.06394 -11.99221 -11.74280 -11.70652 -11.56692 -11.10586 -10.96588 -10.79339 -10.49666 -9.98815 -9.57577 -9.05159 -7.96338 -5.25546 0.49280 0.91818 1.48566 1.50764 1.56508 1.68423 2.06567 2.33141 2.56697 2.94758 3.27498 3.35999 3.56372 3.65474 3.67039 3.83287 3.96034 3.96592 4.04691 4.16434 4.27666 4.31031 4.33100 4.39540 4.40041 4.57126 4.59926 4.69457 4.78019 4.85803 4.88761 4.90364 5.00586 5.04646 5.13656 5.16897 5.25452 5.29960 5.41139 5.54801 5.85710 6.22378 6.26153 6.44532 6.63192 7.20483 7.33605 8.05814 8.29608 9.26079 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.002770 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.008945 B =10105.059187 C =11087.823506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.723 5.723 10 C 0.164 3.836 11 H 0.061 0.939 12 C -0.127 4.127 13 C 0.093 3.907 14 N -0.609 5.609 15 C 0.597 3.403 16 O -0.591 6.591 17 C -0.306 4.306 18 C 0.128 3.872 19 N -0.441 5.441 20 H 0.464 0.536 21 N -0.296 5.296 22 C 0.117 3.883 23 C 0.144 3.856 24 H 0.088 0.912 25 C -0.139 4.139 26 C -0.142 4.142 27 C 0.037 3.963 28 O -0.391 6.391 29 C 0.096 3.904 30 H 0.252 0.748 31 H 0.379 0.621 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.240 0.760 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.042 0.958 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 -25.722 -3.268 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.362 5.362 10 C 0.053 3.947 11 H 0.079 0.921 12 C -0.166 4.166 13 C -0.029 4.029 14 N -0.342 5.342 15 C 0.389 3.611 16 O -0.474 6.474 17 C -0.321 4.321 18 C -0.026 4.026 19 N -0.148 5.148 20 H 0.313 0.687 21 N -0.119 5.119 22 C -0.052 4.052 23 C 0.084 3.916 24 H 0.106 0.894 25 C -0.177 4.177 26 C -0.179 4.179 27 C -0.039 4.039 28 O -0.311 6.311 29 C -0.030 4.030 30 H 0.061 0.939 31 H 0.212 0.788 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.256 0.744 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.130 0.870 43 H 0.060 0.940 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.268 -26.679 -3.693 27.444 hybrid contribution -0.395 2.076 -0.030 2.113 sum 4.873 -24.603 -3.723 25.356 Atomic orbital electron populations 1.69780 1.06373 1.26239 1.59012 1.25486 0.96340 1.00845 1.03371 0.85307 0.77334 0.79593 0.78107 1.20953 1.22010 1.20214 1.19545 0.91372 0.85286 1.41683 0.90969 1.42408 1.05531 1.00406 1.87833 1.21490 0.95398 0.85885 0.91933 0.92081 1.22863 0.99180 0.92393 1.02142 1.22651 0.95568 0.97482 0.87184 1.48292 1.48498 1.07590 1.29788 1.17300 0.77684 0.85525 0.80634 1.90683 1.47735 1.74978 1.33969 1.20077 1.14373 0.93085 1.04612 1.24386 0.96164 0.84111 0.97911 1.46247 1.37272 1.08288 1.23034 0.68666 1.77126 1.12966 1.20859 1.00908 1.22261 0.96412 0.89888 0.96607 1.21272 0.83396 0.96409 0.90531 0.89443 1.22886 0.99566 1.00538 0.94725 1.23152 0.93738 0.99570 1.01489 1.23865 0.97620 1.01457 0.80909 1.88891 1.39450 1.74628 1.28088 1.22952 0.99634 0.79250 1.01192 0.93881 0.78802 0.87549 0.90488 0.87892 0.87846 0.74419 0.90896 0.89796 0.90077 0.87688 0.91315 0.87049 0.93980 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.33 13.06 21.65 0.28 -57.05 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.25 -13.40 9.98 84.03 0.84 -12.56 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.72 -34.40 5.28 -316.37 -1.67 -36.07 16 10 C 0.16 5.94 3.69 46.38 0.17 6.11 16 11 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 12 C -0.13 -3.07 6.57 31.79 0.21 -2.86 16 13 C 0.09 1.70 4.99 86.73 0.43 2.13 16 14 N -0.61 -18.08 3.33 -815.64 -2.71 -20.79 16 15 C 0.60 19.71 7.85 86.66 0.68 20.39 16 16 O -0.59 -24.43 14.94 -4.05 -0.06 -24.49 16 17 C -0.31 -7.96 6.10 -20.15 -0.12 -8.08 16 18 C 0.13 1.92 10.50 84.27 0.88 2.80 16 19 N -0.44 -6.31 7.29 -56.31 -0.41 -6.72 16 20 H 0.46 2.47 8.96 -213.42 -1.91 0.56 16 21 N -0.30 -7.12 12.63 -46.67 -0.59 -7.71 16 22 C 0.12 3.25 5.94 43.52 0.26 3.51 16 23 C 0.14 4.09 3.69 30.22 0.11 4.20 16 24 H 0.09 2.97 5.95 -2.39 -0.01 2.96 16 25 C -0.14 -3.08 6.62 31.58 0.21 -2.87 16 26 C -0.14 -2.33 7.17 31.98 0.23 -2.10 16 27 C 0.04 0.70 7.72 72.75 0.56 1.27 16 28 O -0.39 -11.02 11.17 -148.98 -1.66 -12.68 16 29 C 0.10 3.62 6.60 86.85 0.57 4.19 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.38 19.05 7.71 -92.71 -0.72 18.34 16 32 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 1.93 8.00 -2.39 -0.02 1.91 16 34 H 0.10 1.22 7.03 -2.39 -0.02 1.20 16 35 H 0.10 1.22 6.82 -2.39 -0.02 1.21 16 36 H 0.24 1.38 4.42 -2.91 -0.01 1.37 16 37 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.80 8.04 -2.39 -0.02 1.78 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -79.76 357.38 -0.87 -80.63 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -1.57 Total: 24.29 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.50 Total: 12.80 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.10 Total: -128.34 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.72 Total: -37.17 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -79.76 -0.87 -80.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019279882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.698 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds