Wall clock time and date at job start Tue Mar 31 2020 12:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47449 * 239.99641 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47348 * 119.99703 * 3 2 1 7 7 C 1.38812 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99956 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.64208 * 323.30820 * 10 9 7 12 12 C 1.55154 * 110.71790 * 86.45531 * 10 9 7 13 13 C 1.54908 * 101.57909 * 154.04201 * 12 10 9 14 14 N 1.47423 * 104.83544 * 322.99025 * 13 12 10 15 15 C 1.34777 * 125.64803 * 204.09374 * 14 13 12 16 16 O 1.21288 * 119.99593 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00369 * 0.02562 * 15 14 13 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 15 20 20 N 1.31133 * 126.54753 * 90.00234 * 19 18 17 21 21 C 1.34498 * 105.61233 * 180.02562 * 20 19 18 22 22 C 1.50702 * 126.28741 * 180.02562 * 21 20 19 23 23 C 1.52998 * 117.49611 * 188.62184 * 22 21 20 24 24 C 1.52996 * 117.49827 * 119.99823 * 22 21 20 25 25 N 1.29951 * 107.42315 * 359.97438 * 21 20 19 26 26 O 1.21300 * 110.25058 * 359.70847 * 25 21 20 27 27 C 1.47019 * 108.70295 * 24.35575 * 14 13 12 28 28 H 0.96997 * 120.00093 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00236 * 359.97438 * 9 7 2 30 30 H 1.08991 * 111.00734 * 35.97048 * 12 10 9 31 31 H 1.09001 * 111.00081 * 272.11301 * 12 10 9 32 32 H 1.09002 * 110.36534 * 204.14592 * 13 12 10 33 33 H 1.09002 * 110.45943 * 81.87403 * 13 12 10 34 34 H 1.09002 * 109.47120 * 59.99760 * 17 15 14 35 35 H 1.08998 * 109.46862 * 300.00562 * 17 15 14 36 36 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 37 37 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 38 38 H 1.08999 * 115.54526 * 334.32669 * 22 21 20 39 39 H 1.08995 * 117.49930 * 359.97438 * 23 22 21 40 40 H 1.09000 * 117.49417 * 145.02012 * 23 22 21 41 41 H 1.08999 * 117.49463 * 214.97817 * 24 22 21 42 42 H 1.08995 * 117.49813 * 359.97438 * 24 22 21 43 43 H 1.09000 * 109.88251 * 118.13283 * 27 14 13 44 44 H 1.09004 * 109.88041 * 239.30098 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9587 -3.5805 -0.6089 12 6 2.4104 -4.0872 1.4490 13 6 2.5192 -5.6251 1.2985 14 7 1.4632 -5.9858 0.3351 15 6 0.8738 -7.1933 0.2312 16 8 0.0125 -7.3780 -0.6026 17 6 1.2848 -8.3141 1.1509 18 6 0.4687 -9.5666 0.8251 19 6 0.8802 -10.6875 1.7445 20 7 0.3584 -10.9698 2.9139 21 6 1.0371 -12.0400 3.3643 22 6 0.8136 -12.7514 4.6739 23 6 1.8296 -13.8212 5.0791 24 6 0.4298 -14.2314 4.6174 25 7 1.9202 -12.3486 2.4624 26 8 1.8425 -11.5875 1.5210 27 6 1.1641 -4.8118 -0.4979 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 1.6130 -3.8179 2.1414 31 1 3.3612 -3.6573 1.7640 32 1 2.3415 -6.1135 2.2567 33 1 3.4988 -5.9015 0.9086 34 1 1.1034 -8.0206 2.1849 35 1 2.3452 -8.5260 1.0141 36 1 0.6505 -9.8599 -0.2089 37 1 -0.5918 -9.3549 0.9617 38 1 0.3744 -12.1475 5.4680 39 1 2.6594 -14.0107 4.3982 40 1 2.0591 -13.9212 6.1399 41 1 -0.2616 -14.6012 5.3745 42 1 0.3385 -14.6904 3.6330 43 1 1.3867 -5.0316 -1.5420 44 1 0.1143 -4.5385 -0.3900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019477796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:16 Heat of formation + Delta-G solvation = 72.738940 kcal Electronic energy + Delta-G solvation = -25620.318320 eV Core-core repulsion = 21770.275065 eV Total energy + Delta-G solvation = -3850.043256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.90916 -39.97670 -38.13239 -37.53468 -35.92027 -34.34387 -34.17225 -31.78378 -31.14322 -29.58666 -28.09596 -25.89980 -25.64622 -23.79484 -23.20331 -22.90932 -22.63776 -20.65822 -20.09927 -19.20176 -18.31769 -18.06056 -17.43593 -17.09975 -16.24180 -16.10011 -15.52123 -15.30230 -15.06730 -14.65581 -14.02245 -13.73292 -13.52213 -13.28845 -13.14238 -12.98688 -12.66441 -12.54170 -12.45549 -12.37319 -12.07632 -11.90809 -11.70464 -11.53992 -11.40510 -11.20911 -11.09053 -11.03197 -10.86557 -10.74615 -10.39331 -10.14480 -10.07390 -9.83732 -9.74356 -9.00039 -8.50027 -7.08366 -5.85103 -3.16148 0.78425 1.79391 2.42229 2.63313 3.01148 3.16658 3.30036 3.39263 3.44083 3.45205 3.72759 4.21549 4.29250 4.40075 4.42817 4.51523 4.55920 4.69511 4.90100 4.97391 5.09334 5.11325 5.21431 5.23648 5.29514 5.38612 5.40542 5.50318 5.51766 5.54388 5.56971 5.60722 5.69574 5.71240 5.90685 6.09509 6.18797 6.31817 6.49014 6.54975 6.85649 7.60861 7.62317 7.84740 8.16842 8.32142 9.43580 9.97520 10.32058 11.36915 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.001891 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.633488 B =14802.198903 C =15130.285951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.064 0.936 12 C -0.155 4.155 13 C 0.096 3.904 14 N -0.610 5.610 15 C 0.529 3.471 16 O -0.545 6.545 17 C -0.134 4.134 18 C -0.013 4.013 19 C 0.190 3.810 20 N -0.476 5.476 21 C 0.201 3.799 22 C -0.080 4.080 23 C -0.158 4.158 24 C -0.156 4.156 25 N -0.386 5.386 26 O 0.078 5.922 27 C 0.101 3.899 28 H 0.258 0.742 29 H 0.386 0.614 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 -26.125 8.096 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.059 3.941 11 H 0.082 0.918 12 C -0.196 4.196 13 C -0.027 4.027 14 N -0.344 5.344 15 C 0.317 3.683 16 O -0.423 6.423 17 C -0.175 4.175 18 C -0.052 4.052 19 C -0.030 4.030 20 N -0.209 5.209 21 C -0.071 4.071 22 C -0.100 4.100 23 C -0.196 4.196 24 C -0.195 4.195 25 N -0.094 5.094 26 O 0.020 5.980 27 C -0.022 4.022 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.195 -26.721 8.042 28.219 hybrid contribution 0.196 1.136 0.036 1.153 sum 4.391 -25.585 8.078 27.187 Atomic orbital electron populations 1.69650 1.05169 1.26052 1.56813 1.24779 0.95529 0.97842 1.02458 0.86241 0.78520 0.83335 0.77877 1.21152 1.21650 1.21194 1.19157 0.91022 0.83792 1.43795 0.90994 1.42346 1.05803 0.99331 1.88147 1.21181 0.94144 0.85700 0.93033 0.91831 1.23567 1.02796 0.91464 1.01778 1.22450 0.90411 0.97866 0.91990 1.48460 1.38909 1.10685 1.36304 1.19869 0.81609 0.82308 0.84491 1.90730 1.32013 1.82069 1.37473 1.21585 1.01894 0.92657 1.01342 1.19999 1.02545 0.86060 0.96585 1.28859 0.86803 0.94054 0.93300 1.71891 1.26488 1.13840 1.08681 1.24799 0.91108 0.93253 0.97961 1.20088 1.07307 0.91095 0.91527 1.23085 0.93469 1.00197 1.02856 1.23081 0.98714 0.93926 1.03761 1.74581 1.22277 1.14415 0.98092 1.85311 1.45756 1.31481 1.35459 1.22311 1.01094 0.84647 0.94163 0.93265 0.77926 0.90550 0.90480 0.91261 0.91427 0.87926 0.88140 0.86911 0.86110 0.84560 0.87805 0.87341 0.87265 0.88435 0.91455 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.72 -16.99 5.25 -51.64 -0.27 -17.26 16 10 C 0.17 3.12 3.57 -66.09 -0.24 2.88 16 11 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 12 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 13 C 0.10 1.12 6.69 -2.53 -0.02 1.11 16 14 N -0.61 -8.52 3.33 -170.51 -0.57 -9.08 16 15 C 0.53 7.05 7.85 -10.99 -0.09 6.96 16 16 O -0.54 -9.08 16.31 5.55 0.09 -8.99 16 17 C -0.13 -1.20 4.69 -27.89 -0.13 -1.33 16 18 C -0.01 -0.11 5.13 -27.88 -0.14 -0.25 16 19 C 0.19 1.89 7.77 -13.06 -0.10 1.79 16 20 N -0.48 -5.45 11.55 -9.87 -0.11 -5.56 16 21 C 0.20 2.18 7.74 -156.36 -1.21 0.97 16 22 C -0.08 -0.64 6.33 -91.77 -0.58 -1.22 16 23 C -0.16 -0.98 10.14 -26.73 -0.27 -1.25 16 24 C -0.16 -0.96 10.23 -26.73 -0.27 -1.23 16 25 N -0.39 -4.39 11.77 30.90 0.36 -4.03 16 26 O 0.08 0.83 11.31 18.11 0.20 1.04 16 27 C 0.10 1.69 6.63 -3.06 -0.02 1.67 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.39 9.90 7.53 -40.82 -0.31 9.60 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.87 8.10 -51.93 -0.42 0.44 16 37 H 0.12 1.10 8.10 -51.93 -0.42 0.67 16 38 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 0.75 7.91 -51.93 -0.41 0.33 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -32.33 374.68 -8.96 -41.29 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.53 Total: 6.38 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.48 Total: 0.55 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.14 Total: -62.53 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.30 Total: -7.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.33 -8.96 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019477796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.031 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds