Wall clock time and date at job start Tue Mar 31 2020 12:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47449 * 239.99641 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47348 * 119.99703 * 3 2 1 7 7 C 1.38812 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99956 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.64208 * 323.30820 * 10 9 7 12 12 C 1.55154 * 110.71790 * 86.45531 * 10 9 7 13 13 C 1.54908 * 101.57909 * 154.04201 * 12 10 9 14 14 N 1.47423 * 104.83544 * 322.99025 * 13 12 10 15 15 C 1.34777 * 125.64803 * 204.09374 * 14 13 12 16 16 O 1.21288 * 119.99593 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00369 * 0.02562 * 15 14 13 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 15 20 20 N 1.31133 * 126.54753 * 90.00234 * 19 18 17 21 21 C 1.34498 * 105.61233 * 180.02562 * 20 19 18 22 22 C 1.50702 * 126.28741 * 180.02562 * 21 20 19 23 23 C 1.52998 * 117.49611 * 188.62184 * 22 21 20 24 24 C 1.52996 * 117.49827 * 119.99823 * 22 21 20 25 25 N 1.29951 * 107.42315 * 359.97438 * 21 20 19 26 26 O 1.21300 * 110.25058 * 359.70847 * 25 21 20 27 27 C 1.47019 * 108.70295 * 24.35575 * 14 13 12 28 28 H 0.96997 * 120.00093 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00236 * 359.97438 * 9 7 2 30 30 H 1.08991 * 111.00734 * 35.97048 * 12 10 9 31 31 H 1.09001 * 111.00081 * 272.11301 * 12 10 9 32 32 H 1.09002 * 110.36534 * 204.14592 * 13 12 10 33 33 H 1.09002 * 110.45943 * 81.87403 * 13 12 10 34 34 H 1.09002 * 109.47120 * 59.99760 * 17 15 14 35 35 H 1.08998 * 109.46862 * 300.00562 * 17 15 14 36 36 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 37 37 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 38 38 H 1.08999 * 115.54526 * 334.32669 * 22 21 20 39 39 H 1.08995 * 117.49930 * 359.97438 * 23 22 21 40 40 H 1.09000 * 117.49417 * 145.02012 * 23 22 21 41 41 H 1.08999 * 117.49463 * 214.97817 * 24 22 21 42 42 H 1.08995 * 117.49813 * 359.97438 * 24 22 21 43 43 H 1.09000 * 109.88251 * 118.13283 * 27 14 13 44 44 H 1.09004 * 109.88041 * 239.30098 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9587 -3.5805 -0.6089 12 6 2.4104 -4.0872 1.4490 13 6 2.5192 -5.6251 1.2985 14 7 1.4632 -5.9858 0.3351 15 6 0.8738 -7.1933 0.2312 16 8 0.0125 -7.3780 -0.6026 17 6 1.2848 -8.3141 1.1509 18 6 0.4687 -9.5666 0.8251 19 6 0.8802 -10.6875 1.7445 20 7 0.3584 -10.9698 2.9139 21 6 1.0371 -12.0400 3.3643 22 6 0.8136 -12.7514 4.6739 23 6 1.8296 -13.8212 5.0791 24 6 0.4298 -14.2314 4.6174 25 7 1.9202 -12.3486 2.4624 26 8 1.8425 -11.5875 1.5210 27 6 1.1641 -4.8118 -0.4979 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 1.6130 -3.8179 2.1414 31 1 3.3612 -3.6573 1.7640 32 1 2.3415 -6.1135 2.2567 33 1 3.4988 -5.9015 0.9086 34 1 1.1034 -8.0206 2.1849 35 1 2.3452 -8.5260 1.0141 36 1 0.6505 -9.8599 -0.2089 37 1 -0.5918 -9.3549 0.9617 38 1 0.3744 -12.1475 5.4680 39 1 2.6594 -14.0107 4.3982 40 1 2.0591 -13.9212 6.1399 41 1 -0.2616 -14.6012 5.3745 42 1 0.3385 -14.6904 3.6330 43 1 1.3867 -5.0316 -1.5420 44 1 0.1143 -4.5385 -0.3900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019477796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:15 Heat of formation + Delta-G solvation = 50.856088 kcal Electronic energy + Delta-G solvation = -25621.267232 eV Core-core repulsion = 21770.275065 eV Total energy + Delta-G solvation = -3850.992168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.69954 -41.10931 -38.80451 -38.68747 -36.70521 -35.90500 -35.11691 -33.35256 -32.15147 -30.96344 -29.48296 -26.94698 -26.35622 -25.40699 -24.28524 -23.65032 -23.36599 -21.59120 -21.29441 -20.24598 -19.31534 -19.15306 -18.81363 -18.12242 -17.42729 -16.71155 -16.58536 -16.52894 -16.15143 -15.72680 -15.35878 -15.11566 -14.71186 -14.55030 -14.25189 -13.85720 -13.76062 -13.45354 -13.32128 -13.21791 -13.13605 -13.04682 -12.92864 -12.63662 -12.52368 -12.35323 -12.27420 -12.17382 -12.11017 -11.78396 -11.71975 -11.65082 -11.54758 -10.99721 -10.91406 -10.69747 -9.67073 -9.02978 -7.93666 -5.23847 0.01158 1.03493 1.50175 1.52862 1.58488 1.58837 1.62898 2.02610 2.44907 2.58443 2.74028 3.04432 3.36424 3.44703 3.70960 3.72901 3.77866 3.78672 3.91509 3.93560 4.04635 4.08609 4.26732 4.32453 4.43305 4.46287 4.55685 4.58528 4.66404 4.68038 4.73772 4.83537 4.89030 4.91043 4.97549 5.02245 5.04174 5.12988 5.20583 5.28051 5.46948 5.55403 6.26802 6.54343 7.07620 7.09577 7.33268 8.06028 8.28914 9.29601 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.001891 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.633488 B =14802.198903 C =15130.285951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.732 5.732 10 C 0.163 3.837 11 H 0.070 0.930 12 C -0.147 4.147 13 C 0.104 3.896 14 N -0.613 5.613 15 C 0.528 3.472 16 O -0.584 6.584 17 C -0.120 4.120 18 C -0.007 4.007 19 C 0.200 3.800 20 N -0.498 5.498 21 C 0.195 3.805 22 C -0.102 4.102 23 C -0.149 4.149 24 C -0.148 4.148 25 N -0.403 5.403 26 O 0.075 5.925 27 C 0.110 3.890 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -27.785 9.490 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.372 5.372 10 C 0.053 3.947 11 H 0.087 0.913 12 C -0.188 4.188 13 C -0.017 4.017 14 N -0.346 5.346 15 C 0.318 3.682 16 O -0.464 6.464 17 C -0.161 4.161 18 C -0.046 4.046 19 C -0.020 4.020 20 N -0.232 5.232 21 C -0.077 4.077 22 C -0.122 4.122 23 C -0.186 4.186 24 C -0.187 4.187 25 N -0.112 5.112 26 O 0.018 5.982 27 C -0.014 4.014 28 H 0.059 0.941 29 H 0.203 0.797 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.164 0.836 39 H 0.109 0.891 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.317 -28.431 9.448 30.618 hybrid contribution -0.440 1.546 -0.423 1.662 sum 5.877 -26.885 9.025 28.961 Atomic orbital electron populations 1.69822 1.06779 1.26136 1.59421 1.25598 0.96310 1.01266 1.03726 0.85197 0.77105 0.79064 0.78279 1.20338 1.22705 1.20129 1.19597 0.91666 0.84714 1.41094 0.89823 1.42541 1.05351 1.00768 1.88508 1.21406 0.93903 0.84034 0.95312 0.91251 1.23365 1.02425 0.94472 0.98528 1.22576 0.91023 0.95000 0.93142 1.48535 1.39637 1.10119 1.36303 1.20611 0.80589 0.82651 0.84350 1.90719 1.33694 1.82703 1.39327 1.21549 1.03383 0.90617 1.00533 1.19986 1.02159 0.85633 0.96859 1.28978 0.86257 0.93826 0.92939 1.71908 1.27195 1.14595 1.09470 1.25334 0.90554 0.93071 0.98701 1.20344 1.09144 0.91930 0.90754 1.23148 0.92914 0.98696 1.03877 1.23164 0.99284 0.92326 1.03887 1.74575 1.23044 1.15052 0.98545 1.85289 1.45939 1.31579 1.35402 1.21965 0.99121 0.85618 0.94698 0.94109 0.79657 0.92678 0.89393 0.88109 0.88427 0.86599 0.85286 0.85918 0.86711 0.83578 0.89063 0.85041 0.85012 0.89552 0.91669 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 44.82 29.55 68.60 2.03 46.84 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.24 -12.62 9.98 84.03 0.84 -11.78 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -35.31 5.25 -317.30 -1.67 -36.98 16 10 C 0.16 5.85 3.57 46.18 0.17 6.01 16 11 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 12 C -0.15 -4.22 6.77 31.98 0.22 -4.00 16 13 C 0.10 2.07 6.69 86.85 0.58 2.65 16 14 N -0.61 -15.96 3.33 -811.76 -2.70 -18.65 16 15 C 0.53 13.10 7.85 87.66 0.69 13.79 16 16 O -0.58 -19.21 16.31 -3.05 -0.05 -19.26 16 17 C -0.12 -1.79 4.69 29.85 0.14 -1.65 16 18 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 19 C 0.20 3.66 7.77 88.38 0.69 4.35 16 20 N -0.50 -10.77 11.55 -303.18 -3.50 -14.27 16 21 C 0.20 4.01 7.74 138.46 1.07 5.08 16 22 C -0.10 -1.46 6.33 -11.54 -0.07 -1.53 16 23 C -0.15 -1.56 10.14 30.59 0.31 -1.24 16 24 C -0.15 -1.56 10.23 30.59 0.31 -1.24 16 25 N -0.40 -8.75 11.77 -60.31 -0.71 -9.46 16 26 O 0.07 1.48 11.31 74.88 0.85 2.33 16 27 C 0.11 3.69 6.63 86.74 0.58 4.26 16 28 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 29 H 0.37 19.83 7.53 -92.70 -0.70 19.13 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.10 1.45 7.48 -2.39 -0.02 1.44 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.12 1.51 7.85 -2.39 -0.02 1.49 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.15 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.21 7.91 -2.39 -0.02 1.19 16 40 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.73 7.70 -2.39 -0.02 1.71 16 Total: -1.00 -72.09 374.68 0.98 -71.11 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.32 Total: 25.94 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.13 Total: 10.91 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -8.30 Total: -137.86 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.80 Total: -16.93 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.09 0.98 -71.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019477796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.964 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds