Wall clock time and date at job start Tue Mar 31 2020 12:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85562 * 23.80097 * 10 9 7 12 12 C 1.53788 * 113.61507 * 154.99729 * 10 9 7 13 13 C 1.53781 * 87.08169 * 139.97339 * 12 10 9 14 14 H 1.08998 * 113.61699 * 220.01286 * 13 12 10 15 15 N 1.46507 * 113.60636 * 89.20041 * 13 12 10 16 16 C 1.34779 * 119.99627 * 154.99653 * 15 13 12 17 17 O 1.21606 * 119.99724 * 0.02562 * 16 15 13 18 18 C 1.47424 * 120.00120 * 179.97438 * 16 15 13 19 19 C 1.38041 * 126.41396 * 359.69728 * 18 16 15 20 20 N 1.34262 * 107.41843 * 179.86873 * 19 18 16 21 21 H 0.97000 * 125.75507 * 180.14358 * 20 19 18 22 22 N 1.39934 * 108.49095 * 0.39118 * 20 19 18 23 23 C 1.30450 * 108.89573 * 359.75187 * 22 20 19 24 24 C 1.50699 * 125.98819 * 180.02562 * 23 22 20 25 25 H 1.08994 * 110.43608 * 178.86293 * 24 23 22 26 26 C 1.54817 * 110.48548 * 56.18106 * 24 23 22 27 27 C 1.54994 * 102.09048 * 220.44183 * 26 24 23 28 28 O 1.44380 * 103.49227 * 37.02426 * 27 26 24 29 29 C 1.43745 * 106.97644 * 319.93765 * 28 27 26 30 30 C 1.53781 * 87.08319 * 334.56972 * 13 12 10 31 31 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61485 * 254.53210 * 12 10 9 34 34 H 1.09001 * 113.60918 * 25.42803 * 12 10 9 35 35 H 0.96992 * 120.00489 * 335.00253 * 15 13 12 36 36 H 1.08007 * 126.29302 * 0.02562 * 19 18 16 37 37 H 1.09000 * 110.90610 * 338.63909 * 26 24 23 38 38 H 1.08994 * 110.90752 * 102.24679 * 26 24 23 39 39 H 1.09002 * 110.62173 * 278.52515 * 27 26 24 40 40 H 1.08998 * 110.62103 * 155.52360 * 27 26 24 41 41 H 1.08994 * 109.88236 * 267.09341 * 29 28 27 42 42 H 1.08998 * 110.00498 * 146.00406 * 29 28 27 43 43 H 1.08998 * 113.61202 * 270.87948 * 30 13 12 44 44 H 1.09000 * 113.61477 * 139.97983 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 3.0653 -3.5640 0.4046 12 6 1.2598 -4.8291 0.5928 13 6 1.8483 -5.6973 -0.5317 14 1 1.1340 -6.4008 -0.9595 15 7 3.1248 -6.3251 -0.1812 16 6 3.5095 -7.4599 -0.7983 17 8 2.7972 -7.9624 -1.6463 18 6 4.7942 -8.0914 -0.4461 19 6 5.7038 -7.6340 0.4860 20 7 6.7319 -8.4974 0.5017 21 1 7.5195 -8.4308 1.0639 22 7 6.4782 -9.5067 -0.4339 23 6 5.3278 -9.2750 -1.0037 24 6 4.6810 -10.1216 -2.0695 25 1 3.7138 -9.7056 -2.3511 26 6 4.5241 -11.5820 -1.5802 27 6 4.8929 -12.3911 -2.8498 28 8 5.9570 -11.6177 -3.4448 29 6 5.5999 -10.2327 -3.3016 30 6 2.0000 -4.4015 -1.3458 31 1 -0.4851 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 1.5906 -5.1218 1.5893 34 1 0.1795 -4.7004 0.5252 35 1 3.6930 -5.9242 0.4949 36 1 5.6054 -6.7462 1.0931 37 1 5.2177 -11.7965 -0.7672 38 1 3.4967 -11.7822 -1.2763 39 1 4.0402 -12.4545 -3.5258 40 1 5.2460 -13.3868 -2.5813 41 1 5.0696 -9.8927 -4.1911 42 1 6.4957 -9.6302 -3.1513 43 1 1.1221 -4.1561 -1.9434 44 1 2.9285 -4.3492 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020438831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:27 Heat of formation + Delta-G solvation = 24.637400 kcal Electronic energy + Delta-G solvation = -26438.268859 eV Core-core repulsion = 22586.139764 eV Total energy + Delta-G solvation = -3852.129095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86217 -39.73030 -39.34715 -37.86189 -34.38020 -33.75136 -32.87911 -30.95137 -30.61025 -29.45948 -29.10694 -25.23214 -24.58980 -23.68382 -23.40943 -22.61534 -22.19111 -20.52724 -19.74675 -19.13165 -18.52851 -17.41762 -16.68911 -16.54280 -16.32712 -15.69608 -15.42065 -15.24245 -15.15923 -14.48766 -14.28501 -14.00330 -13.82834 -13.77980 -13.55722 -13.11977 -13.02215 -12.25974 -12.11259 -12.00798 -11.81028 -11.61817 -11.58805 -11.22628 -11.09193 -10.84215 -10.57076 -10.34247 -10.16086 -10.15176 -10.00024 -9.78455 -9.65624 -9.23000 -9.18070 -8.94879 -8.78753 -7.09101 -6.16677 -3.17054 1.17824 1.81327 2.30974 3.20127 3.32315 3.47487 3.54138 3.63146 3.71974 4.02193 4.25510 4.44734 4.62374 4.62489 4.71141 4.89553 4.95452 4.98263 5.06012 5.11842 5.14037 5.32727 5.35781 5.45219 5.45977 5.50189 5.62296 5.69412 5.76137 5.78348 5.91240 5.98818 6.08371 6.12873 6.20188 6.42639 6.53076 6.58366 6.62985 6.71846 6.97525 7.16591 7.57570 7.74980 8.27275 8.69279 9.15700 10.02003 10.16771 11.31576 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002346 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.133342 B =11932.530211 C =12310.592316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.085 2.915 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.074 0.926 12 C -0.161 4.161 13 C 0.120 3.880 14 H 0.098 0.902 15 N -0.704 5.704 16 C 0.595 3.405 17 O -0.544 6.544 18 C -0.282 4.282 19 C 0.106 3.894 20 N -0.459 5.459 21 H 0.445 0.555 22 N -0.288 5.288 23 C 0.142 3.858 24 C -0.057 4.057 25 H 0.132 0.868 26 C -0.143 4.143 27 C 0.047 3.953 28 O -0.376 6.376 29 C 0.061 3.939 30 C -0.176 4.176 31 H 0.256 0.744 32 H 0.369 0.631 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.188 0.812 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -22.340 1.272 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.916 3.084 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.060 3.940 11 H 0.092 0.908 12 C -0.201 4.201 13 C 0.014 3.986 14 H 0.116 0.884 15 N -0.354 5.354 16 C 0.382 3.618 17 O -0.422 6.422 18 C -0.297 4.297 19 C -0.047 4.047 20 N -0.164 5.164 21 H 0.290 0.710 22 N -0.110 5.110 23 C -0.026 4.026 24 C -0.077 4.077 25 H 0.150 0.850 26 C -0.182 4.182 27 C -0.029 4.029 28 O -0.295 6.295 29 C -0.017 4.017 30 C -0.218 4.218 31 H 0.068 0.932 32 H 0.202 0.798 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.205 0.795 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.788 -21.822 0.641 25.301 hybrid contribution -0.202 -0.569 0.874 1.062 sum 12.586 -22.391 1.515 25.731 Atomic orbital electron populations 1.70820 1.06074 1.28567 1.53309 1.25796 0.97060 1.01115 1.00253 0.83153 0.73508 0.75037 0.76675 1.22143 1.21984 1.21935 1.20137 0.92052 0.85864 1.48715 0.91660 1.42417 1.04806 1.00869 1.88256 1.21558 0.94958 0.84667 0.92796 0.90841 1.23880 1.01489 0.97409 0.97336 1.21780 0.84914 0.94022 0.97882 0.88406 1.45522 1.22194 1.25596 1.42049 1.17188 0.84050 0.79767 0.80750 1.90688 1.54790 1.63767 1.32972 1.20320 0.99934 1.02015 1.07436 1.23219 0.88084 0.95568 0.97804 1.46137 1.18715 1.19115 1.32411 0.70994 1.77190 1.17733 1.10259 1.05835 1.22053 0.91174 0.93501 0.95842 1.21407 1.00853 0.94160 0.91326 0.85004 1.23214 1.03084 0.92833 0.99056 1.23561 0.90684 0.95817 0.92858 1.88868 1.43524 1.16576 1.80553 1.23171 0.98708 0.83725 0.96082 1.24294 1.02044 0.95315 1.00170 0.93247 0.79754 0.91724 0.89196 0.76962 0.79493 0.90071 0.89705 0.91856 0.88914 0.91514 0.89855 0.89723 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.67 13.70 55.49 0.76 -27.91 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 3 Si 1.09 25.49 29.92 -169.99 -5.09 20.41 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.34 -9.19 9.97 -15.06 -0.15 -9.34 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.72 -17.42 5.40 -52.63 -0.28 -17.71 16 10 C 0.17 3.18 4.36 -67.11 -0.29 2.89 16 11 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 12 C -0.16 -2.41 7.58 -25.92 -0.20 -2.60 16 13 C 0.12 1.71 4.32 -67.11 -0.29 1.42 16 14 H 0.10 1.48 7.46 -51.93 -0.39 1.09 16 15 N -0.70 -8.46 5.26 -54.09 -0.28 -8.75 16 16 C 0.60 7.87 7.81 -12.52 -0.10 7.77 16 17 O -0.54 -8.79 14.19 5.27 0.07 -8.72 16 18 C -0.28 -3.11 6.13 -105.07 -0.64 -3.75 16 19 C 0.11 0.79 11.52 -16.56 -0.19 0.60 16 20 N -0.46 -3.35 7.29 30.85 0.22 -3.12 16 21 H 0.45 1.65 8.96 -182.72 -1.64 0.01 16 22 N -0.29 -3.11 12.41 33.90 0.42 -2.69 16 23 C 0.14 1.64 5.56 -82.02 -0.46 1.18 16 24 C -0.06 -0.63 3.41 -90.24 -0.31 -0.94 16 25 H 0.13 1.63 5.69 -51.93 -0.30 1.33 16 26 C -0.14 -1.32 6.70 -24.72 -0.17 -1.49 16 27 C 0.05 0.41 7.72 38.21 0.29 0.71 16 28 O -0.38 -4.39 11.52 -35.23 -0.41 -4.80 16 29 C 0.06 0.67 7.36 37.73 0.28 0.94 16 30 C -0.18 -3.00 7.68 -25.92 -0.20 -3.20 16 31 H 0.26 7.64 6.78 -40.82 -0.28 7.37 16 32 H 0.37 9.18 6.76 -40.82 -0.28 8.90 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 35 H 0.40 3.73 7.63 -40.82 -0.31 3.42 16 36 H 0.19 0.67 7.46 -52.48 -0.39 0.28 16 37 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -35.42 363.76 -8.99 -44.42 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.38 Total: 10.55 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.51 Total: -7.17 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.84 Total: -60.18 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.33 Total: -13.51 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.42 -8.99 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020438831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.053 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds