Wall clock time and date at job start Tue Mar 31 2020 12:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85562 * 23.80097 * 10 9 7 12 12 C 1.53788 * 113.61507 * 154.99729 * 10 9 7 13 13 C 1.53781 * 87.08169 * 139.97339 * 12 10 9 14 14 H 1.08998 * 113.61699 * 220.01286 * 13 12 10 15 15 N 1.46507 * 113.60636 * 89.20041 * 13 12 10 16 16 C 1.34779 * 119.99627 * 154.99653 * 15 13 12 17 17 O 1.21606 * 119.99724 * 0.02562 * 16 15 13 18 18 C 1.47424 * 120.00120 * 179.97438 * 16 15 13 19 19 C 1.38041 * 126.41396 * 359.69728 * 18 16 15 20 20 N 1.34262 * 107.41843 * 179.86873 * 19 18 16 21 21 H 0.97000 * 125.75507 * 180.14358 * 20 19 18 22 22 N 1.39934 * 108.49095 * 0.39118 * 20 19 18 23 23 C 1.30450 * 108.89573 * 359.75187 * 22 20 19 24 24 C 1.50699 * 125.98819 * 180.02562 * 23 22 20 25 25 H 1.08994 * 110.43608 * 178.86293 * 24 23 22 26 26 C 1.54817 * 110.48548 * 56.18106 * 24 23 22 27 27 C 1.54994 * 102.09048 * 220.44183 * 26 24 23 28 28 O 1.44380 * 103.49227 * 37.02426 * 27 26 24 29 29 C 1.43745 * 106.97644 * 319.93765 * 28 27 26 30 30 C 1.53781 * 87.08319 * 334.56972 * 13 12 10 31 31 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61485 * 254.53210 * 12 10 9 34 34 H 1.09001 * 113.60918 * 25.42803 * 12 10 9 35 35 H 0.96992 * 120.00489 * 335.00253 * 15 13 12 36 36 H 1.08007 * 126.29302 * 0.02562 * 19 18 16 37 37 H 1.09000 * 110.90610 * 338.63909 * 26 24 23 38 38 H 1.08994 * 110.90752 * 102.24679 * 26 24 23 39 39 H 1.09002 * 110.62173 * 278.52515 * 27 26 24 40 40 H 1.08998 * 110.62103 * 155.52360 * 27 26 24 41 41 H 1.08994 * 109.88236 * 267.09341 * 29 28 27 42 42 H 1.08998 * 110.00498 * 146.00406 * 29 28 27 43 43 H 1.08998 * 113.61202 * 270.87948 * 30 13 12 44 44 H 1.09000 * 113.61477 * 139.97983 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 3.0653 -3.5640 0.4046 12 6 1.2598 -4.8291 0.5928 13 6 1.8483 -5.6973 -0.5317 14 1 1.1340 -6.4008 -0.9595 15 7 3.1248 -6.3251 -0.1812 16 6 3.5095 -7.4599 -0.7983 17 8 2.7972 -7.9624 -1.6463 18 6 4.7942 -8.0914 -0.4461 19 6 5.7038 -7.6340 0.4860 20 7 6.7319 -8.4974 0.5017 21 1 7.5195 -8.4308 1.0639 22 7 6.4782 -9.5067 -0.4339 23 6 5.3278 -9.2750 -1.0037 24 6 4.6810 -10.1216 -2.0695 25 1 3.7138 -9.7056 -2.3511 26 6 4.5241 -11.5820 -1.5802 27 6 4.8929 -12.3911 -2.8498 28 8 5.9570 -11.6177 -3.4448 29 6 5.5999 -10.2327 -3.3016 30 6 2.0000 -4.4015 -1.3458 31 1 -0.4851 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 1.5906 -5.1218 1.5893 34 1 0.1795 -4.7004 0.5252 35 1 3.6930 -5.9242 0.4949 36 1 5.6054 -6.7462 1.0931 37 1 5.2177 -11.7965 -0.7672 38 1 3.4967 -11.7822 -1.2763 39 1 4.0402 -12.4545 -3.5258 40 1 5.2460 -13.3868 -2.5813 41 1 5.0696 -9.8927 -4.1911 42 1 6.4957 -9.6302 -3.1513 43 1 1.1221 -4.1561 -1.9434 44 1 2.9285 -4.3492 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020438831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:26 Heat of formation + Delta-G solvation = -2.395964 kcal Electronic energy + Delta-G solvation = -26439.441114 eV Core-core repulsion = 22586.139764 eV Total energy + Delta-G solvation = -3853.301350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.60932 -40.89889 -40.13765 -39.10769 -36.08779 -34.63809 -34.14890 -31.92741 -31.64311 -30.86971 -29.89208 -26.58757 -26.22937 -24.75072 -24.45097 -23.69367 -23.20208 -21.43605 -20.65256 -20.24323 -19.59500 -19.18854 -17.69812 -17.32383 -17.10996 -16.88145 -16.74622 -16.24500 -16.03562 -15.97142 -15.45167 -15.27240 -15.16262 -14.75165 -14.56593 -14.37519 -13.82510 -13.65057 -13.38056 -13.23403 -12.86514 -12.66936 -12.58788 -12.38009 -12.35290 -11.99300 -11.90643 -11.84536 -11.80383 -11.58641 -11.06097 -10.91977 -10.83486 -10.80988 -10.42261 -10.14570 -9.78089 -9.07088 -8.36784 -5.30896 0.49962 0.97314 1.59935 1.71113 1.72419 1.82063 2.20113 2.38251 2.73169 2.95780 3.29449 3.40217 3.56388 3.65817 3.68287 3.81330 3.84237 3.94273 4.03019 4.18637 4.23212 4.25646 4.28066 4.28628 4.36384 4.59300 4.70027 4.71527 4.81697 4.83076 4.85951 4.91399 4.95281 5.09259 5.12665 5.16083 5.23751 5.27958 5.61980 5.70125 5.85673 6.21442 6.43011 6.51871 6.66084 7.11678 7.30314 8.02177 8.14157 9.15191 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002346 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.133342 B =11932.530211 C =12310.592316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.108 4.108 3 Si 1.130 2.870 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.070 0.930 9 N -0.740 5.740 10 C 0.158 3.842 11 H 0.084 0.916 12 C -0.143 4.143 13 C 0.140 3.860 14 H 0.092 0.908 15 N -0.694 5.694 16 C 0.595 3.405 17 O -0.580 6.580 18 C -0.316 4.316 19 C 0.138 3.862 20 N -0.443 5.443 21 H 0.462 0.538 22 N -0.312 5.312 23 C 0.131 3.869 24 C -0.059 4.059 25 H 0.115 0.885 26 C -0.137 4.137 27 C 0.045 3.955 28 O -0.396 6.396 29 C 0.063 3.937 30 C -0.174 4.174 31 H 0.245 0.755 32 H 0.360 0.640 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.232 0.768 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.999 -22.959 2.766 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.299 4.299 3 Si 0.956 3.044 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.088 0.912 9 N -0.380 5.380 10 C 0.048 3.952 11 H 0.102 0.898 12 C -0.182 4.182 13 C 0.034 3.966 14 H 0.110 0.890 15 N -0.344 5.344 16 C 0.385 3.615 17 O -0.461 6.461 18 C -0.331 4.331 19 C -0.016 4.016 20 N -0.149 5.149 21 H 0.311 0.689 22 N -0.135 5.135 23 C -0.037 4.037 24 C -0.080 4.080 25 H 0.133 0.867 26 C -0.175 4.175 27 C -0.031 4.031 28 O -0.316 6.316 29 C -0.014 4.014 30 C -0.216 4.216 31 H 0.056 0.944 32 H 0.192 0.808 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.249 0.751 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.831 -22.508 2.166 27.042 hybrid contribution -0.731 -0.473 0.415 0.965 sum 14.099 -22.982 2.581 27.085 Atomic orbital electron populations 1.70931 1.07272 1.28016 1.56487 1.27156 0.97143 1.04764 1.00856 0.82572 0.73887 0.71623 0.76323 1.19368 1.21860 1.22284 1.20494 0.92451 0.87049 1.46076 0.91181 1.42641 1.04658 1.01982 1.88687 1.21930 0.95625 0.83471 0.94154 0.89771 1.23683 1.00811 0.95079 0.98675 1.21428 0.85880 0.92749 0.96589 0.88986 1.45338 1.21524 1.25274 1.42291 1.17494 0.84457 0.79549 0.80024 1.90675 1.56066 1.64775 1.34624 1.20214 1.00126 1.02830 1.09891 1.23775 0.86292 0.95656 0.95925 1.46180 1.19231 1.18069 1.31450 0.68910 1.77139 1.17607 1.11764 1.06941 1.22121 0.91558 0.93907 0.96097 1.21332 0.99936 0.95146 0.91554 0.86676 1.23173 1.03502 0.91820 0.99045 1.23756 0.90541 0.96156 0.92672 1.88835 1.44830 1.16953 1.80962 1.23120 0.98341 0.83605 0.96350 1.24154 1.01087 0.96958 0.99412 0.94441 0.80759 0.89200 0.89688 0.75107 0.75139 0.90609 0.88731 0.90749 0.87111 0.91311 0.90686 0.91500 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.47 13.70 21.65 0.30 -60.17 16 2 C -0.11 -6.14 5.50 84.86 0.47 -5.68 16 3 Si 1.13 50.91 29.92 68.60 2.05 52.96 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.33 -17.77 9.97 84.03 0.84 -16.93 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 9 N -0.74 -35.46 5.40 -320.43 -1.73 -37.19 16 10 C 0.16 5.60 4.36 45.52 0.20 5.80 16 11 H 0.08 2.80 8.10 -2.39 -0.02 2.79 16 12 C -0.14 -3.98 7.58 31.12 0.24 -3.74 16 13 C 0.14 3.79 4.32 45.52 0.20 3.99 16 14 H 0.09 2.70 7.46 -2.39 -0.02 2.68 16 15 N -0.69 -15.00 5.26 -443.29 -2.33 -17.33 16 16 C 0.60 14.92 7.81 86.66 0.68 15.60 16 17 O -0.58 -18.74 14.19 -4.05 -0.06 -18.79 16 18 C -0.32 -6.36 6.13 -20.15 -0.12 -6.48 16 19 C 0.14 1.54 11.52 84.27 0.97 2.51 16 20 N -0.44 -5.10 7.29 -56.31 -0.41 -5.51 16 21 H 0.46 1.80 8.96 -213.43 -1.91 -0.11 16 22 N -0.31 -6.26 12.41 -46.68 -0.58 -6.84 16 23 C 0.13 2.90 5.56 43.51 0.24 3.14 16 24 C -0.06 -1.31 3.41 -10.55 -0.04 -1.34 16 25 H 0.12 2.94 5.69 -2.39 -0.01 2.92 16 26 C -0.14 -2.45 6.70 31.90 0.21 -2.24 16 27 C 0.04 0.74 7.72 72.66 0.56 1.30 16 28 O -0.40 -9.15 11.52 -148.98 -1.72 -10.87 16 29 C 0.06 1.41 7.36 72.36 0.53 1.94 16 30 C -0.17 -5.82 7.68 31.12 0.24 -5.58 16 31 H 0.25 15.04 6.78 -92.70 -0.63 14.42 16 32 H 0.36 18.24 6.76 -92.71 -0.63 17.62 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 35 H 0.41 6.20 7.63 -92.71 -0.71 5.49 16 36 H 0.23 0.36 7.46 -2.91 -0.02 0.34 16 37 H 0.08 1.43 7.69 -2.39 -0.02 1.41 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -78.14 363.76 -1.30 -79.44 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -2.04 Total: 32.02 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.21 Total: -7.72 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -4.75 Total: -127.04 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.77 Total: -29.66 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -78.14 -1.30 -79.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020438831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.047 kcal (2) G-P(sol) polarization free energy of solvation -78.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds