Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41290 * 126.14717 * 2 1 4 4 C 1.47720 * 125.94891 * 359.92346 * 3 2 1 5 5 O 1.21566 * 120.00093 * 359.44976 * 4 3 2 6 6 N 1.34784 * 119.99916 * 179.71984 * 4 3 2 7 7 C 1.46499 * 119.99893 * 179.72977 * 6 4 3 8 8 H 1.08994 * 112.85555 * 23.80061 * 7 6 4 9 9 C 1.53777 * 113.61200 * 155.00334 * 7 6 4 10 10 C 1.53781 * 87.08274 * 139.97613 * 9 7 6 11 11 H 1.09001 * 113.61023 * 89.20145 * 10 9 7 12 12 N 1.46504 * 113.61498 * 220.01477 * 10 9 7 13 13 C 1.36935 * 119.99741 * 204.99987 * 12 10 9 14 14 H 1.08002 * 120.00365 * 0.02562 * 13 12 10 15 15 C 1.38814 * 119.99748 * 180.02562 * 13 12 10 16 16 N 1.31612 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00055 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47208 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.47378 * 210.00448 * 17 15 13 20 20 H 1.48508 * 109.47123 * 330.00084 * 17 15 13 21 21 C 1.53775 * 87.07928 * 334.56404 * 10 9 7 22 22 N 1.32119 * 108.09561 * 179.66870 * 3 2 1 23 23 N 1.39395 * 108.11128 * 0.21380 * 22 3 2 24 24 C 1.34858 * 126.14854 * 180.15609 * 2 1 3 25 25 O 1.36037 * 128.63683 * 0.21445 * 24 2 1 26 26 C 1.43524 * 114.96550 * 164.62692 * 25 24 2 27 27 C 1.53226 * 109.28077 * 47.22910 * 26 25 24 28 28 C 1.46722 * 128.21478 * 180.20404 * 23 22 3 29 29 H 1.09004 * 109.47049 * 90.02891 * 1 2 3 30 30 H 1.09009 * 109.46929 * 210.02704 * 1 2 3 31 31 H 1.08995 * 109.47200 * 330.02848 * 1 2 3 32 32 H 0.97005 * 119.99846 * 359.72765 * 6 4 3 33 33 H 1.09003 * 113.61102 * 254.52380 * 9 7 6 34 34 H 1.08994 * 113.61778 * 25.42685 * 9 7 6 35 35 H 0.96996 * 119.99660 * 25.00213 * 12 10 9 36 36 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 37 37 H 1.08997 * 113.61959 * 270.88049 * 21 10 9 38 38 H 1.09002 * 113.61358 * 139.97938 * 21 10 9 39 39 H 1.09004 * 109.50111 * 167.17066 * 26 25 24 40 40 H 1.09003 * 109.50303 * 287.28843 * 26 25 24 41 41 H 1.09001 * 109.49663 * 55.34281 * 27 26 25 42 42 H 1.09000 * 109.49933 * 175.44583 * 27 26 25 43 43 H 1.09007 * 109.76247 * 282.58234 * 28 23 22 44 44 H 1.09002 * 109.75937 * 43.34448 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3404 1.1409 0.0000 4 6 1.8863 2.5466 -0.0016 5 8 0.6977 2.8014 -0.0132 6 7 2.7898 3.5467 0.0043 7 6 2.3395 4.9407 -0.0033 8 1 1.3312 5.0621 0.3925 9 6 3.3598 5.9209 0.5992 10 6 2.9776 6.8908 -0.5313 11 1 2.1444 7.5472 -0.2803 12 7 4.1203 7.6128 -1.0965 13 6 3.9311 8.8245 -1.7057 14 1 2.9397 9.2482 -1.7690 15 6 5.0137 9.5083 -2.2417 16 7 6.2220 8.9923 -2.1640 17 14 4.7559 11.1617 -3.0720 18 1 4.8861 12.2463 -2.0662 19 1 5.7767 11.3466 -4.1345 20 1 3.3997 11.2064 -3.6755 21 6 2.5659 5.6539 -1.3468 22 7 3.5965 0.7315 0.0073 23 7 3.5980 -0.6624 0.0071 24 6 2.3025 -1.0890 -0.0030 25 8 1.9455 -2.4016 -0.0105 26 6 2.9982 -3.3137 -0.3568 27 6 4.2574 -2.9594 0.4410 28 6 4.7517 -1.5688 0.0178 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 3.7383 3.3434 0.0136 33 1 3.0877 6.2788 1.5922 34 1 4.3897 5.5686 0.5427 35 1 5.0107 7.2324 -1.0393 36 1 6.9785 9.4699 -2.5389 37 1 3.3787 5.2285 -1.9354 38 1 1.6528 5.7961 -1.9249 39 1 2.6906 -4.3319 -0.1181 40 1 3.2096 -3.2374 -1.4234 41 1 4.0241 -2.9540 1.5057 42 1 5.0341 -3.6978 0.2419 43 1 5.1890 -1.6207 -0.9794 44 1 5.4957 -1.2100 0.7290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022169850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = 40.871790 kcal Electronic energy + Delta-G solvation = -26299.268926 eV Core-core repulsion = 22447.843807 eV Total energy + Delta-G solvation = -3851.425119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14623 -39.83412 -38.77453 -37.70124 -35.29193 -34.08421 -32.77804 -31.75501 -31.12158 -29.78343 -27.14008 -26.52901 -25.06896 -24.94773 -23.96751 -22.56998 -21.32885 -20.27191 -20.12029 -19.20683 -18.22618 -17.11416 -17.04326 -16.40947 -16.21185 -15.82218 -15.58978 -15.29111 -14.86570 -14.62808 -14.47004 -14.24624 -13.83659 -13.39181 -13.10786 -12.99884 -12.84720 -12.73535 -12.26561 -12.10765 -11.97204 -11.85577 -11.78260 -11.67743 -11.23662 -10.94435 -10.89995 -10.60463 -10.46534 -10.29302 -10.03824 -9.81525 -9.57683 -9.42192 -8.87806 -8.69853 -8.42545 -6.95357 -5.77401 -3.06008 1.17596 1.78857 1.92798 2.57391 3.31360 3.38702 3.44669 3.50085 3.51654 3.62970 3.84802 4.19061 4.25034 4.52110 4.60948 4.63596 4.77554 4.88512 4.94088 5.06536 5.13723 5.20961 5.28279 5.40229 5.43447 5.51133 5.62460 5.82733 5.87994 5.91320 5.99003 6.12198 6.15777 6.31279 6.36359 6.38930 6.55893 6.66805 6.78569 6.90536 7.06547 7.17466 7.70861 7.71672 8.28417 8.41151 9.52453 10.09682 10.44256 11.45079 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.002265 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.416225 B =12356.427452 C =13096.728104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.192 4.192 3 C 0.054 3.946 4 C 0.599 3.401 5 O -0.526 6.526 6 N -0.697 5.697 7 C 0.117 3.883 8 H 0.113 0.887 9 C -0.158 4.158 10 C 0.169 3.831 11 H 0.081 0.919 12 N -0.710 5.710 13 C -0.242 4.242 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.175 4.175 22 N -0.242 5.242 23 N -0.393 5.393 24 C 0.256 3.744 25 O -0.284 6.284 26 C 0.049 3.951 27 C -0.175 4.175 28 C 0.128 3.872 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.406 0.594 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -28.676 6.559 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.204 4.204 3 C -0.113 4.113 4 C 0.382 3.618 5 O -0.400 6.400 6 N -0.347 5.347 7 C 0.013 3.987 8 H 0.131 0.869 9 C -0.198 4.198 10 C 0.056 3.944 11 H 0.099 0.901 12 N -0.348 5.348 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.218 4.218 22 N -0.072 5.072 23 N -0.190 5.190 24 C 0.091 3.909 25 O -0.191 6.191 26 C -0.027 4.027 27 C -0.214 4.214 28 C 0.008 3.992 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.386 -28.149 6.513 29.223 hybrid contribution 0.467 0.069 -0.575 0.744 sum -3.919 -28.080 5.937 28.967 Atomic orbital electron populations 1.20109 0.87633 1.02847 1.02194 1.18877 0.97364 0.87370 1.16815 1.22019 0.90433 0.95018 1.03863 1.16873 0.85896 0.82178 0.76881 1.90766 1.15800 1.83320 1.50123 1.45954 1.09789 1.06042 1.72935 1.22587 0.99424 0.77446 0.99283 0.86947 1.23871 0.98906 0.97070 0.99976 1.21355 0.91982 0.89998 0.91057 0.90119 1.42362 1.04746 1.20985 1.66720 1.19325 0.93727 0.95414 1.28903 0.90951 1.24766 0.95372 0.99081 1.01757 1.69656 0.98263 1.39226 1.51010 0.86175 0.77067 0.83975 0.78903 1.21693 1.21811 1.20679 1.24339 1.01569 0.99511 0.96355 1.77577 1.19149 0.87075 1.23431 1.49148 1.05013 1.04792 1.60096 1.19157 0.84631 0.85178 1.01951 1.86645 1.35775 1.10848 1.85849 1.23120 0.86582 0.93456 0.99511 1.22648 0.99656 0.96486 1.02561 1.21982 0.86398 0.86585 1.04275 0.91924 0.92298 0.89813 0.75897 0.91375 0.89911 0.78084 0.93488 0.90152 0.92072 0.86182 0.90867 0.89186 0.87030 0.88996 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.82 36.01 0.35 -0.50 16 2 C -0.19 -2.61 6.14 -104.66 -0.64 -3.25 16 3 C 0.05 0.79 7.10 -82.71 -0.59 0.20 16 4 C 0.60 9.46 7.83 -12.38 -0.10 9.36 16 5 O -0.53 -9.37 14.47 5.31 0.08 -9.30 16 6 N -0.70 -10.31 5.35 -54.00 -0.29 -10.60 16 7 C 0.12 1.84 4.24 -67.12 -0.28 1.55 16 8 H 0.11 1.78 7.46 -51.93 -0.39 1.39 16 9 C -0.16 -2.58 7.58 -25.92 -0.20 -2.77 16 10 C 0.17 3.34 4.48 -67.12 -0.30 3.04 16 11 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 12 N -0.71 -17.74 5.40 -52.64 -0.28 -18.03 16 13 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 17 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.18 -3.17 7.68 -25.92 -0.20 -3.37 16 22 N -0.24 -3.26 12.32 33.43 0.41 -2.85 16 23 N -0.39 -4.27 4.08 -60.93 -0.25 -4.52 16 24 C 0.26 2.99 7.48 -16.72 -0.13 2.87 16 25 O -0.28 -2.66 10.65 -19.86 -0.21 -2.87 16 26 C 0.05 0.22 7.00 37.27 0.26 0.48 16 27 C -0.18 -0.59 6.16 -26.34 -0.16 -0.75 16 28 C 0.13 0.76 7.41 -3.65 -0.03 0.73 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 32 H 0.41 5.54 8.42 -40.82 -0.34 5.19 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 35 H 0.39 10.16 7.92 -40.82 -0.32 9.83 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 43 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -34.22 366.83 -8.00 -42.22 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.43 Total: 10.23 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.25 Total: 0.22 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.31 Total: -63.45 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.13 Total: -12.17 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.22 -8.00 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022169850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.090 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds