Wall clock time and date at job start Tue Mar 31 2020 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41290 * 126.14717 * 2 1 4 4 C 1.47720 * 125.94891 * 359.92346 * 3 2 1 5 5 O 1.21566 * 120.00093 * 359.44976 * 4 3 2 6 6 N 1.34784 * 119.99916 * 179.71984 * 4 3 2 7 7 C 1.46499 * 119.99893 * 179.72977 * 6 4 3 8 8 H 1.08994 * 112.85555 * 23.80061 * 7 6 4 9 9 C 1.53777 * 113.61200 * 155.00334 * 7 6 4 10 10 C 1.53781 * 87.08274 * 139.97613 * 9 7 6 11 11 H 1.09001 * 113.61023 * 89.20145 * 10 9 7 12 12 N 1.46504 * 113.61498 * 220.01477 * 10 9 7 13 13 C 1.36935 * 119.99741 * 204.99987 * 12 10 9 14 14 H 1.08002 * 120.00365 * 0.02562 * 13 12 10 15 15 C 1.38814 * 119.99748 * 180.02562 * 13 12 10 16 16 N 1.31612 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00055 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47208 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.47378 * 210.00448 * 17 15 13 20 20 H 1.48508 * 109.47123 * 330.00084 * 17 15 13 21 21 C 1.53775 * 87.07928 * 334.56404 * 10 9 7 22 22 N 1.32119 * 108.09561 * 179.66870 * 3 2 1 23 23 N 1.39395 * 108.11128 * 0.21380 * 22 3 2 24 24 C 1.34858 * 126.14854 * 180.15609 * 2 1 3 25 25 O 1.36037 * 128.63683 * 0.21445 * 24 2 1 26 26 C 1.43524 * 114.96550 * 164.62692 * 25 24 2 27 27 C 1.53226 * 109.28077 * 47.22910 * 26 25 24 28 28 C 1.46722 * 128.21478 * 180.20404 * 23 22 3 29 29 H 1.09004 * 109.47049 * 90.02891 * 1 2 3 30 30 H 1.09009 * 109.46929 * 210.02704 * 1 2 3 31 31 H 1.08995 * 109.47200 * 330.02848 * 1 2 3 32 32 H 0.97005 * 119.99846 * 359.72765 * 6 4 3 33 33 H 1.09003 * 113.61102 * 254.52380 * 9 7 6 34 34 H 1.08994 * 113.61778 * 25.42685 * 9 7 6 35 35 H 0.96996 * 119.99660 * 25.00213 * 12 10 9 36 36 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 37 37 H 1.08997 * 113.61959 * 270.88049 * 21 10 9 38 38 H 1.09002 * 113.61358 * 139.97938 * 21 10 9 39 39 H 1.09004 * 109.50111 * 167.17066 * 26 25 24 40 40 H 1.09003 * 109.50303 * 287.28843 * 26 25 24 41 41 H 1.09001 * 109.49663 * 55.34281 * 27 26 25 42 42 H 1.09000 * 109.49933 * 175.44583 * 27 26 25 43 43 H 1.09007 * 109.76247 * 282.58234 * 28 23 22 44 44 H 1.09002 * 109.75937 * 43.34448 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3404 1.1409 0.0000 4 6 1.8863 2.5466 -0.0016 5 8 0.6977 2.8014 -0.0132 6 7 2.7898 3.5467 0.0043 7 6 2.3395 4.9407 -0.0033 8 1 1.3312 5.0621 0.3925 9 6 3.3598 5.9209 0.5992 10 6 2.9776 6.8908 -0.5313 11 1 2.1444 7.5472 -0.2803 12 7 4.1203 7.6128 -1.0965 13 6 3.9311 8.8245 -1.7057 14 1 2.9397 9.2482 -1.7690 15 6 5.0137 9.5083 -2.2417 16 7 6.2220 8.9923 -2.1640 17 14 4.7559 11.1617 -3.0720 18 1 4.8861 12.2463 -2.0662 19 1 5.7767 11.3466 -4.1345 20 1 3.3997 11.2064 -3.6755 21 6 2.5659 5.6539 -1.3468 22 7 3.5965 0.7315 0.0073 23 7 3.5980 -0.6624 0.0071 24 6 2.3025 -1.0890 -0.0030 25 8 1.9455 -2.4016 -0.0105 26 6 2.9982 -3.3137 -0.3568 27 6 4.2574 -2.9594 0.4410 28 6 4.7517 -1.5688 0.0178 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 3.7383 3.3434 0.0136 33 1 3.0877 6.2788 1.5922 34 1 4.3897 5.5686 0.5427 35 1 5.0107 7.2324 -1.0393 36 1 6.9785 9.4699 -2.5389 37 1 3.3787 5.2285 -1.9354 38 1 1.6528 5.7961 -1.9249 39 1 2.6906 -4.3319 -0.1181 40 1 3.2096 -3.2374 -1.4234 41 1 4.0241 -2.9540 1.5057 42 1 5.0341 -3.6978 0.2419 43 1 5.1890 -1.6207 -0.9794 44 1 5.4957 -1.2100 0.7290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022169850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:58 Heat of formation + Delta-G solvation = 15.299538 kcal Electronic energy + Delta-G solvation = -26300.377822 eV Core-core repulsion = 22447.843807 eV Total energy + Delta-G solvation = -3852.534015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98404 -41.04439 -39.71524 -38.98127 -35.93122 -35.77196 -34.37023 -32.53818 -32.19970 -31.50746 -27.82741 -27.44244 -26.54250 -26.35588 -25.30526 -23.72522 -22.47843 -21.38496 -20.84169 -20.59397 -19.27201 -18.98153 -17.82310 -17.53344 -17.26075 -16.60800 -16.55112 -16.29530 -16.02697 -15.91733 -15.71472 -15.35989 -15.00450 -14.92214 -14.41996 -14.10241 -13.86311 -13.63131 -13.43006 -13.30408 -13.15430 -13.10110 -12.81531 -12.60044 -12.32653 -12.22244 -12.17896 -12.09184 -12.05207 -11.83290 -11.74039 -11.50992 -11.07145 -10.84998 -10.31205 -9.98733 -9.32816 -8.97816 -7.93984 -5.22115 0.16385 0.97735 1.04727 1.48875 1.50147 1.58598 1.81100 2.22011 2.28591 2.58268 3.01385 3.37525 3.50417 3.55383 3.70192 3.85296 3.91756 3.95644 3.98493 4.00337 4.26045 4.28795 4.32635 4.35533 4.48224 4.50977 4.62541 4.72468 4.88208 4.89950 4.90112 4.90393 4.92536 5.02907 5.11883 5.16915 5.23322 5.33657 5.44664 5.52123 5.66279 6.14543 6.17892 6.28328 6.53132 7.06981 7.34685 8.10428 8.33881 9.29335 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.002265 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.416225 B =12356.427452 C =13096.728104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.223 4.223 3 C 0.033 3.967 4 C 0.599 3.401 5 O -0.551 6.551 6 N -0.692 5.692 7 C 0.135 3.865 8 H 0.117 0.883 9 C -0.141 4.141 10 C 0.152 3.848 11 H 0.085 0.915 12 N -0.724 5.724 13 C -0.243 4.243 14 H 0.078 0.922 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.972 3.028 18 H -0.286 1.286 19 H -0.297 1.297 20 H -0.270 1.270 21 C -0.170 4.170 22 N -0.257 5.257 23 N -0.385 5.385 24 C 0.266 3.734 25 O -0.295 6.295 26 C 0.035 3.965 27 C -0.164 4.164 28 C 0.111 3.889 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.151 0.849 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -30.823 6.982 31.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.235 4.235 3 C -0.133 4.133 4 C 0.383 3.617 5 O -0.427 6.427 6 N -0.341 5.341 7 C 0.030 3.970 8 H 0.135 0.865 9 C -0.180 4.180 10 C 0.042 3.958 11 H 0.103 0.897 12 N -0.361 5.361 13 C -0.375 4.375 14 H 0.096 0.904 15 C -0.269 4.269 16 N -0.621 5.621 17 Si 0.802 3.198 18 H -0.213 1.213 19 H -0.224 1.224 20 H -0.195 1.195 21 C -0.212 4.212 22 N -0.088 5.088 23 N -0.183 5.183 24 C 0.099 3.901 25 O -0.202 6.202 26 C -0.039 4.039 27 C -0.202 4.202 28 C -0.008 4.008 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.248 0.752 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.207 0.793 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.168 0.832 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.126 0.874 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.323 -30.338 6.954 31.423 hybrid contribution 0.454 0.520 -0.696 0.980 sum -3.869 -29.818 6.259 30.712 Atomic orbital electron populations 1.20026 0.87362 1.02662 1.02047 1.19093 0.98021 0.87950 1.18409 1.21799 0.91258 0.94472 1.05796 1.17077 0.85550 0.82911 0.76119 1.90743 1.16790 1.83902 1.51306 1.45840 1.10096 1.05494 1.72717 1.22321 0.99509 0.77896 0.97263 0.86488 1.23683 0.99104 0.95604 0.99624 1.21665 0.90843 0.90496 0.92808 0.89749 1.42518 1.05623 1.20751 1.67228 1.19723 0.93838 0.96156 1.27799 0.90411 1.25563 0.95289 1.02692 1.03362 1.69806 0.98905 1.40672 1.52674 0.85152 0.77108 0.79921 0.77668 1.21322 1.22356 1.19527 1.24171 1.00888 0.98941 0.97198 1.77478 1.18621 0.88925 1.23781 1.49567 1.06189 1.04223 1.58335 1.19110 0.84615 0.86001 1.00375 1.86659 1.37952 1.09987 1.85612 1.23594 0.86263 0.93703 1.00307 1.22676 1.00075 0.95538 1.01875 1.22545 0.85394 0.87070 1.05742 0.92048 0.90837 0.91514 0.75160 0.89501 0.89816 0.79305 0.94046 0.91453 0.92255 0.83151 0.90136 0.89636 0.83087 0.87406 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.56 9.82 71.24 0.70 -0.86 16 2 C -0.22 -6.03 6.14 -19.89 -0.12 -6.15 16 3 C 0.03 0.96 7.10 42.36 0.30 1.26 16 4 C 0.60 19.12 7.83 86.75 0.68 19.80 16 5 O -0.55 -19.98 14.47 -3.92 -0.06 -20.03 16 6 N -0.69 -20.31 5.35 -443.03 -2.37 -22.68 16 7 C 0.14 4.16 4.24 45.52 0.19 4.35 16 8 H 0.12 3.59 7.46 -2.39 -0.02 3.57 16 9 C -0.14 -4.43 7.58 31.12 0.24 -4.20 16 10 C 0.15 5.98 4.48 45.51 0.20 6.18 16 11 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16 12 N -0.72 -36.45 5.40 -320.45 -1.73 -38.18 16 13 C -0.24 -13.55 9.97 84.03 0.84 -12.72 16 14 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 15 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 16 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 17 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 C -0.17 -6.14 7.68 31.12 0.24 -5.90 16 22 N -0.26 -6.80 12.32 -48.15 -0.59 -7.39 16 23 N -0.38 -7.82 4.08 -457.16 -1.87 -9.69 16 24 C 0.27 5.92 7.48 83.21 0.62 6.54 16 25 O -0.29 -4.94 10.65 -93.97 -1.00 -5.94 16 26 C 0.04 0.21 7.00 72.06 0.50 0.71 16 27 C -0.16 -0.50 6.16 30.85 0.19 -0.31 16 28 C 0.11 1.02 7.41 86.51 0.64 1.66 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.07 1.85 6.54 -2.39 -0.02 1.84 16 32 H 0.41 11.14 8.42 -92.70 -0.78 10.36 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.66 8.09 -2.39 -0.02 2.64 16 35 H 0.37 20.14 7.92 -92.71 -0.73 19.41 16 36 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.15 0.00 8.14 -2.38 -0.02 -0.02 16 40 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.15 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -75.05 366.83 -0.09 -75.14 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.47 Total: 33.14 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.69 Total: 6.39 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -6.28 Total: -137.19 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.06 Total: -25.98 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -75.05 -0.09 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022169850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.442 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds