Wall clock time and date at job start Tue Mar 31 2020 12:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47043 * 270.00080 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47075 * 149.99948 * 3 2 1 7 7 C 1.38820 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99782 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99618 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99595 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85277 * 26.80308 * 10 9 7 12 12 C 1.53777 * 113.61389 * 158.00542 * 10 9 7 13 13 C 1.53772 * 87.08350 * 89.19799 * 12 10 9 14 14 H 1.09006 * 113.61746 * 140.06396 * 13 12 10 15 15 N 1.46501 * 113.61692 * 270.88085 * 13 12 10 16 16 C 1.34767 * 120.00329 * 276.13138 * 15 13 12 17 17 O 1.21612 * 120.00253 * 359.97438 * 16 15 13 18 18 C 1.47428 * 120.00511 * 179.97438 * 16 15 13 19 19 C 1.38043 * 126.41204 * 0.02562 * 18 16 15 20 20 N 1.34257 * 107.41868 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.75837 * 180.02562 * 20 19 18 22 22 N 1.39934 * 108.49216 * 359.78713 * 20 19 18 23 23 C 1.30448 * 108.89578 * 0.36297 * 22 20 19 24 24 C 1.50702 * 125.98885 * 179.90287 * 23 22 20 25 25 H 1.09001 * 110.45649 * 182.29883 * 24 23 22 26 26 C 1.54509 * 110.50868 * 59.69562 * 24 23 22 27 27 C 1.54475 * 104.06385 * 241.21674 * 26 24 23 28 28 O 1.44432 * 104.89819 * 335.96729 * 27 26 24 29 29 C 1.44683 * 105.13919 * 40.49955 * 28 27 26 30 30 C 1.53781 * 87.08391 * 25.43325 * 13 12 10 31 31 H 0.96993 * 120.00249 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00240 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.61346 * 334.64492 * 12 10 9 34 34 H 1.09001 * 113.68927 * 203.75682 * 12 10 9 35 35 H 0.97000 * 119.99722 * 96.12628 * 15 13 12 36 36 H 1.08003 * 126.29252 * 359.96373 * 19 18 16 37 37 H 1.09003 * 110.50686 * 122.56971 * 26 24 23 38 38 H 1.08995 * 110.51266 * 359.86284 * 26 24 23 39 39 H 1.09001 * 110.37139 * 94.85027 * 27 26 24 40 40 H 1.08999 * 110.37480 * 217.08192 * 27 26 24 41 41 H 1.08998 * 110.35439 * 200.67904 * 29 28 27 42 42 H 1.08994 * 110.45571 * 78.40428 * 29 28 27 43 43 H 1.08995 * 113.61644 * 89.11527 * 30 13 12 44 44 H 1.09005 * 113.61349 * 220.02171 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5473 -3.2858 -0.4525 12 6 5.5514 -2.3512 -0.5283 13 6 5.9738 -2.0484 0.9189 14 1 6.9126 -2.5211 1.2078 15 7 5.9261 -0.6240 1.2584 16 6 6.9660 0.1768 0.9528 17 8 7.9444 -0.2829 0.3956 18 6 6.9178 1.6103 1.2939 19 6 5.8803 2.2683 1.9234 20 7 6.2365 3.5571 2.0446 21 1 5.7015 4.2573 2.4500 22 7 7.5122 3.7188 1.4925 23 6 7.9250 2.5677 1.0385 24 6 9.2472 2.3039 0.3652 25 1 9.3135 1.2623 0.0508 26 6 10.4165 2.6595 1.3105 27 6 11.1782 3.7757 0.5620 28 8 10.8486 3.5807 -0.8306 29 6 9.4407 3.2474 -0.8426 30 6 4.7262 -2.8298 1.3635 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 5.6979 -1.5136 -1.2103 34 1 5.9555 -3.2871 -0.9143 35 1 5.1459 -0.2574 1.7032 36 1 4.9524 1.8275 2.2568 37 1 11.0608 1.7937 1.4634 38 1 10.0383 3.0284 2.2639 39 1 10.8409 4.7563 0.8980 40 1 12.2522 3.6713 0.7160 41 1 9.1801 2.7358 -1.7691 42 1 8.8355 4.1459 -0.7229 43 1 4.9035 -3.8972 1.4952 44 1 4.2066 -2.3785 2.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022505296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:33 Heat of formation + Delta-G solvation = 31.200476 kcal Electronic energy + Delta-G solvation = -27717.346070 eV Core-core repulsion = 23865.501571 eV Total energy + Delta-G solvation = -3851.844499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68846 -39.75292 -39.21182 -37.76173 -33.94351 -33.56569 -32.78730 -30.82080 -30.68778 -30.03864 -28.96836 -25.32656 -24.78973 -23.63011 -23.43214 -22.48747 -21.87084 -20.07744 -19.64493 -19.21863 -18.24961 -17.66778 -16.47921 -16.41441 -16.02384 -15.67923 -15.37955 -15.13382 -15.00240 -14.66035 -14.19476 -13.88982 -13.87063 -13.72991 -13.43349 -12.94066 -12.79342 -12.20703 -12.07971 -11.97717 -11.79321 -11.73484 -11.51555 -11.12209 -11.10570 -10.99832 -10.86988 -10.49623 -10.37345 -9.96313 -9.83464 -9.68088 -9.66748 -9.54099 -9.10020 -9.01073 -8.61754 -7.43402 -5.92278 -3.28481 1.38262 1.97109 2.48608 3.03671 3.21533 3.27515 3.38780 3.51980 3.81767 4.31027 4.39322 4.43137 4.60914 4.75737 4.87359 4.93786 4.96921 5.05095 5.18094 5.21531 5.26300 5.29529 5.34446 5.44423 5.56572 5.63934 5.66300 5.70766 5.71506 5.83412 6.02703 6.05887 6.13179 6.25985 6.28871 6.47051 6.52354 6.63209 6.67478 6.87727 6.94316 7.32537 7.76101 7.86995 8.27773 8.45187 9.05216 9.76871 9.97404 11.25899 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.004243 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.222432 B = 6597.132352 C = 7723.137930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.730 5.730 10 C 0.169 3.831 11 H 0.072 0.928 12 C -0.167 4.167 13 C 0.127 3.873 14 H 0.084 0.916 15 N -0.705 5.705 16 C 0.595 3.405 17 O -0.544 6.544 18 C -0.284 4.284 19 C 0.111 3.889 20 N -0.459 5.459 21 H 0.445 0.555 22 N -0.295 5.295 23 C 0.142 3.858 24 C -0.054 4.054 25 H 0.132 0.868 26 C -0.141 4.141 27 C 0.046 3.954 28 O -0.374 6.374 29 C 0.056 3.944 30 C -0.176 4.176 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.401 0.599 36 H 0.189 0.811 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.988 4.533 6.075 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.372 5.372 10 C 0.058 3.942 11 H 0.090 0.910 12 C -0.207 4.207 13 C 0.023 3.977 14 H 0.101 0.899 15 N -0.356 5.356 16 C 0.382 3.618 17 O -0.423 6.423 18 C -0.299 4.299 19 C -0.042 4.042 20 N -0.164 5.164 21 H 0.290 0.710 22 N -0.117 5.117 23 C -0.026 4.026 24 C -0.075 4.075 25 H 0.150 0.850 26 C -0.179 4.179 27 C -0.031 4.031 28 O -0.293 6.293 29 C -0.021 4.021 30 C -0.218 4.218 31 H 0.071 0.929 32 H 0.195 0.805 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.205 0.795 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.809 5.405 5.627 19.443 hybrid contribution -0.854 0.991 0.672 1.471 sum 16.954 6.396 6.300 19.184 Atomic orbital electron populations 1.69684 1.05010 1.25826 1.57206 1.24686 0.95210 0.97032 1.02151 0.86625 0.78349 0.85349 0.78123 1.21121 1.21762 1.20721 1.19150 0.80399 0.94904 1.43018 0.88860 1.42595 1.03896 1.01729 1.88932 1.21137 0.90476 0.89824 0.92796 0.91013 1.23839 0.98493 1.02018 0.96372 1.21767 0.98787 0.80337 0.96851 0.89850 1.45703 1.19626 1.09078 1.61201 1.17175 0.82574 0.84068 0.77960 1.90673 1.32777 1.75686 1.43171 1.20301 0.97461 0.95835 1.16318 1.23416 0.99220 0.85322 0.96257 1.46086 1.14683 1.08550 1.47046 0.70999 1.77064 0.94237 1.22052 1.18370 1.22038 0.95679 0.89185 0.95697 1.21351 0.87566 1.04181 0.94368 0.84999 1.22966 0.96359 0.99546 0.99071 1.23408 1.00214 0.97795 0.81650 1.89172 1.24727 1.90708 1.24645 1.23528 0.82827 0.97412 0.98377 1.24097 0.96117 0.99415 1.02121 0.92943 0.80476 0.91357 0.89290 0.76251 0.79462 0.90004 0.90395 0.92207 0.89130 0.88554 0.91712 0.89408 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.97 55.49 0.78 -26.91 16 2 C 0.01 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 20.10 27.74 -169.99 -4.71 15.39 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -5.37 5.27 56.52 0.30 -5.07 16 7 C -0.24 -6.41 10.46 -15.06 -0.16 -6.57 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 N -0.73 -15.76 4.83 -52.63 -0.25 -16.01 16 10 C 0.17 3.00 4.55 -67.11 -0.31 2.70 16 11 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 12 C -0.17 -2.63 7.61 -25.93 -0.20 -2.82 16 13 C 0.13 1.89 3.98 -67.12 -0.27 1.62 16 14 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 15 N -0.70 -10.71 4.29 -54.09 -0.23 -10.94 16 16 C 0.59 9.55 7.81 -12.52 -0.10 9.45 16 17 O -0.54 -9.76 14.55 5.27 0.08 -9.68 16 18 C -0.28 -4.14 6.13 -105.07 -0.64 -4.78 16 19 C 0.11 1.37 11.19 -16.56 -0.19 1.19 16 20 N -0.46 -5.09 7.29 30.85 0.22 -4.87 16 21 H 0.45 3.37 8.96 -182.72 -1.64 1.73 16 22 N -0.30 -3.88 12.36 33.90 0.42 -3.46 16 23 C 0.14 1.99 5.62 -82.02 -0.46 1.53 16 24 C -0.05 -0.71 3.47 -90.20 -0.31 -1.02 16 25 H 0.13 1.93 5.70 -51.93 -0.30 1.64 16 26 C -0.14 -1.52 6.73 -25.16 -0.17 -1.69 16 27 C 0.05 0.47 7.62 37.93 0.29 0.76 16 28 O -0.37 -4.86 11.67 -35.23 -0.41 -5.27 16 29 C 0.06 0.71 7.18 37.94 0.27 0.98 16 30 C -0.18 -2.58 7.58 -25.92 -0.20 -2.78 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.36 7.62 4.28 -40.82 -0.17 7.44 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.40 5.96 6.82 -40.82 -0.28 5.68 16 36 H 0.19 2.01 6.57 -52.48 -0.34 1.66 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.83 7.65 -51.93 -0.40 0.43 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -32.38 357.00 -8.68 -41.06 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -7.41 Total: 16.72 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.53 Total: -1.40 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.93 Total: -62.20 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.33 Total: -14.95 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.71 Total: 15.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.38 -8.68 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022505296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.262 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds