Wall clock time and date at job start Tue Mar 31 2020 12:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47043 * 270.00080 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47075 * 149.99948 * 3 2 1 7 7 C 1.38820 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99782 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99618 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99595 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85277 * 26.80308 * 10 9 7 12 12 C 1.53777 * 113.61389 * 158.00542 * 10 9 7 13 13 C 1.53772 * 87.08350 * 89.19799 * 12 10 9 14 14 H 1.09006 * 113.61746 * 140.06396 * 13 12 10 15 15 N 1.46501 * 113.61692 * 270.88085 * 13 12 10 16 16 C 1.34767 * 120.00329 * 276.13138 * 15 13 12 17 17 O 1.21612 * 120.00253 * 359.97438 * 16 15 13 18 18 C 1.47428 * 120.00511 * 179.97438 * 16 15 13 19 19 C 1.38043 * 126.41204 * 0.02562 * 18 16 15 20 20 N 1.34257 * 107.41868 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.75837 * 180.02562 * 20 19 18 22 22 N 1.39934 * 108.49216 * 359.78713 * 20 19 18 23 23 C 1.30448 * 108.89578 * 0.36297 * 22 20 19 24 24 C 1.50702 * 125.98885 * 179.90287 * 23 22 20 25 25 H 1.09001 * 110.45649 * 182.29883 * 24 23 22 26 26 C 1.54509 * 110.50868 * 59.69562 * 24 23 22 27 27 C 1.54475 * 104.06385 * 241.21674 * 26 24 23 28 28 O 1.44432 * 104.89819 * 335.96729 * 27 26 24 29 29 C 1.44683 * 105.13919 * 40.49955 * 28 27 26 30 30 C 1.53781 * 87.08391 * 25.43325 * 13 12 10 31 31 H 0.96993 * 120.00249 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00240 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.61346 * 334.64492 * 12 10 9 34 34 H 1.09001 * 113.68927 * 203.75682 * 12 10 9 35 35 H 0.97000 * 119.99722 * 96.12628 * 15 13 12 36 36 H 1.08003 * 126.29252 * 359.96373 * 19 18 16 37 37 H 1.09003 * 110.50686 * 122.56971 * 26 24 23 38 38 H 1.08995 * 110.51266 * 359.86284 * 26 24 23 39 39 H 1.09001 * 110.37139 * 94.85027 * 27 26 24 40 40 H 1.08999 * 110.37480 * 217.08192 * 27 26 24 41 41 H 1.08998 * 110.35439 * 200.67904 * 29 28 27 42 42 H 1.08994 * 110.45571 * 78.40428 * 29 28 27 43 43 H 1.08995 * 113.61644 * 89.11527 * 30 13 12 44 44 H 1.09005 * 113.61349 * 220.02171 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5473 -3.2858 -0.4525 12 6 5.5514 -2.3512 -0.5283 13 6 5.9738 -2.0484 0.9189 14 1 6.9126 -2.5211 1.2078 15 7 5.9261 -0.6240 1.2584 16 6 6.9660 0.1768 0.9528 17 8 7.9444 -0.2829 0.3956 18 6 6.9178 1.6103 1.2939 19 6 5.8803 2.2683 1.9234 20 7 6.2365 3.5571 2.0446 21 1 5.7015 4.2573 2.4500 22 7 7.5122 3.7188 1.4925 23 6 7.9250 2.5677 1.0385 24 6 9.2472 2.3039 0.3652 25 1 9.3135 1.2623 0.0508 26 6 10.4165 2.6595 1.3105 27 6 11.1782 3.7757 0.5620 28 8 10.8486 3.5807 -0.8306 29 6 9.4407 3.2474 -0.8426 30 6 4.7262 -2.8298 1.3635 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 5.6979 -1.5136 -1.2103 34 1 5.9555 -3.2871 -0.9143 35 1 5.1459 -0.2574 1.7032 36 1 4.9524 1.8275 2.2568 37 1 11.0608 1.7937 1.4634 38 1 10.0383 3.0284 2.2639 39 1 10.8409 4.7563 0.8980 40 1 12.2522 3.6713 0.7160 41 1 9.1801 2.7358 -1.7691 42 1 8.8355 4.1459 -0.7229 43 1 4.9035 -3.8972 1.4952 44 1 4.2066 -2.3785 2.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022505296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:32 Heat of formation + Delta-G solvation = 7.197821 kcal Electronic energy + Delta-G solvation = -27718.386903 eV Core-core repulsion = 23865.501571 eV Total energy + Delta-G solvation = -3852.885332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.68050 -40.99957 -40.13142 -39.05566 -35.56718 -34.67832 -34.14411 -32.56011 -31.64781 -31.19008 -29.87874 -26.63790 -26.28306 -24.89741 -24.56252 -23.47224 -23.09972 -21.22329 -20.88233 -20.37506 -19.49995 -19.29351 -17.61427 -17.34648 -16.98847 -16.88347 -16.56102 -16.44524 -16.17761 -15.97151 -15.68685 -15.14892 -14.98725 -14.81619 -14.59970 -14.52521 -13.85237 -13.79651 -13.49771 -13.10598 -12.90034 -12.88539 -12.69454 -12.56459 -12.34726 -12.06932 -12.00069 -11.91553 -11.83172 -11.76584 -11.07947 -10.96096 -10.89001 -10.71470 -10.61800 -10.13110 -9.78474 -9.29597 -8.01144 -5.35292 0.38762 0.92506 1.22301 1.41358 1.44806 1.63204 2.23558 2.37046 2.47241 2.92162 3.28775 3.34861 3.47469 3.54678 3.70358 3.73181 3.87110 3.88740 4.02000 4.11671 4.22037 4.27313 4.29119 4.30956 4.39359 4.49883 4.70596 4.79492 4.82842 4.88916 4.94692 4.98847 5.03642 5.07636 5.11282 5.24387 5.26165 5.35880 5.67557 5.74451 5.83874 6.09214 6.23538 6.35119 6.60237 7.08159 7.27070 7.84362 8.04458 9.20142 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.004243 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.222432 B = 6597.132352 C = 7723.137930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.949 3.051 4 H -0.301 1.301 5 H -0.291 1.291 6 H -0.229 1.229 7 C -0.228 4.228 8 H 0.059 0.941 9 N -0.732 5.732 10 C 0.146 3.854 11 H 0.063 0.937 12 C -0.158 4.158 13 C 0.130 3.870 14 H 0.096 0.904 15 N -0.704 5.704 16 C 0.593 3.407 17 O -0.569 6.569 18 C -0.311 4.311 19 C 0.121 3.879 20 N -0.444 5.444 21 H 0.461 0.539 22 N -0.303 5.303 23 C 0.135 3.865 24 C -0.056 4.056 25 H 0.113 0.887 26 C -0.135 4.135 27 C 0.045 3.955 28 O -0.391 6.391 29 C 0.059 3.941 30 C -0.155 4.155 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.047 0.953 34 H 0.115 0.885 35 H 0.404 0.596 36 H 0.209 0.791 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.053 5.215 7.376 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.777 3.223 4 H -0.229 1.229 5 H -0.218 1.218 6 H -0.153 1.153 7 C -0.359 4.359 8 H 0.077 0.923 9 N -0.374 5.374 10 C 0.037 3.963 11 H 0.081 0.919 12 C -0.197 4.197 13 C 0.026 3.974 14 H 0.114 0.886 15 N -0.355 5.355 16 C 0.382 3.618 17 O -0.450 6.450 18 C -0.326 4.326 19 C -0.034 4.034 20 N -0.150 5.150 21 H 0.310 0.690 22 N -0.125 5.125 23 C -0.033 4.033 24 C -0.076 4.076 25 H 0.131 0.869 26 C -0.173 4.173 27 C -0.032 4.032 28 O -0.310 6.310 29 C -0.019 4.019 30 C -0.196 4.196 31 H 0.065 0.935 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.240 0.760 36 H 0.225 0.775 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.929 6.070 6.965 21.967 hybrid contribution -1.516 0.662 0.237 1.671 sum 18.413 6.732 7.202 20.886 Atomic orbital electron populations 1.69882 1.07233 1.26575 1.59745 1.25491 0.96026 1.01159 1.02883 0.85559 0.79266 0.79931 0.77550 1.22894 1.21777 1.15335 1.19078 0.82422 0.93551 1.40859 0.92296 1.42501 1.02216 1.03444 1.89286 1.21449 0.91237 0.88089 0.95542 0.91912 1.23820 0.96621 1.02599 0.96687 1.21803 0.99327 0.80382 0.95928 0.88587 1.45712 1.19523 1.09233 1.61040 1.17394 0.82246 0.84713 0.77462 1.90661 1.33671 1.76287 1.44346 1.20325 0.98750 0.95342 1.18226 1.23652 0.99213 0.85471 0.95043 1.46141 1.14101 1.08763 1.45961 0.69023 1.77037 0.95138 1.21734 1.18611 1.22147 0.95948 0.89331 0.95880 1.21287 0.88284 1.03083 0.94985 0.86858 1.22941 0.95686 1.00038 0.98664 1.23579 1.01516 0.97823 0.80236 1.89151 1.24711 1.90792 1.26340 1.23477 0.82886 0.97211 0.98310 1.23941 0.94959 1.01268 0.99391 0.93452 0.80009 0.93459 0.86627 0.76011 0.77479 0.89312 0.90202 0.91606 0.86943 0.88733 0.91926 0.86346 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.17 13.97 21.65 0.30 -59.87 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.95 40.95 27.74 68.60 1.90 42.86 16 4 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.23 -7.73 5.27 99.48 0.52 -7.20 16 7 C -0.23 -12.06 10.46 84.04 0.88 -11.18 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.73 -30.81 4.83 -320.43 -1.55 -32.36 16 10 C 0.15 4.98 4.55 45.52 0.21 5.18 16 11 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 12 C -0.16 -4.61 7.61 31.12 0.24 -4.37 16 13 C 0.13 3.51 3.98 45.51 0.18 3.69 16 14 H 0.10 2.42 8.07 -2.38 -0.02 2.40 16 15 N -0.70 -19.66 4.29 -443.31 -1.90 -21.56 16 16 C 0.59 17.94 7.81 86.67 0.68 18.61 16 17 O -0.57 -19.74 14.55 -4.07 -0.06 -19.80 16 18 C -0.31 -8.39 6.13 -20.15 -0.12 -8.51 16 19 C 0.12 2.58 11.19 84.28 0.94 3.52 16 20 N -0.44 -8.40 7.29 -56.32 -0.41 -8.81 16 21 H 0.46 5.33 8.96 -213.43 -1.91 3.42 16 22 N -0.30 -7.26 12.36 -46.67 -0.58 -7.84 16 23 C 0.13 3.54 5.62 43.52 0.24 3.78 16 24 C -0.06 -1.40 3.47 -10.52 -0.04 -1.43 16 25 H 0.11 3.29 5.70 -2.39 -0.01 3.28 16 26 C -0.13 -2.70 6.73 31.61 0.21 -2.49 16 27 C 0.04 0.83 7.62 72.48 0.55 1.39 16 28 O -0.39 -9.70 11.67 -148.98 -1.74 -11.44 16 29 C 0.06 1.44 7.18 72.49 0.52 1.96 16 30 C -0.16 -4.11 7.58 31.12 0.24 -3.88 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 32 H 0.37 14.66 4.28 -92.71 -0.40 14.27 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.74 16 35 H 0.40 10.77 6.82 -92.71 -0.63 10.14 16 36 H 0.21 3.51 6.57 -2.91 -0.02 3.49 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.56 7.73 -2.39 -0.02 1.54 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.06 1.54 7.65 -2.39 -0.02 1.52 16 43 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.07 1.93 8.13 -2.38 -0.02 1.91 16 Total: -1.00 -71.80 357.00 -0.90 -72.69 By element: Atomic # 1 Polarization: 44.99 SS G_CDS: -2.06 Total: 42.92 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.20 Total: 3.20 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -4.14 Total: -130.44 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.80 Total: -31.24 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.90 Total: 42.86 kcal Total: -71.80 -0.90 -72.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022505296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.890 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds