Wall clock time and date at job start Tue Mar 31 2020 12:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48498 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47269 * 300.00096 * 3 2 1 6 6 H 1.48497 * 109.46750 * 59.99866 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 163.07530 * 7 2 1 9 9 N 1.36942 * 120.00133 * 343.07682 * 7 2 1 10 10 C 1.46930 * 120.62512 * 331.83769 * 9 7 2 11 11 C 1.53197 * 108.77229 * 233.58453 * 10 9 7 12 12 C 1.53043 * 109.31048 * 305.36329 * 11 10 9 13 13 C 1.53047 * 109.53907 * 61.36745 * 12 11 10 14 14 H 1.09002 * 109.49337 * 58.58454 * 13 12 11 15 15 C 1.52994 * 109.50007 * 178.64951 * 13 12 11 16 16 N 1.46499 * 109.47177 * 185.00178 * 15 13 12 17 17 C 1.34779 * 119.99826 * 180.02562 * 16 15 13 18 18 O 1.21605 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.47292 * 119.99645 * 179.97438 * 17 16 15 20 20 C 1.37936 * 125.90014 * 180.02562 * 19 17 16 21 21 C 1.39443 * 107.46213 * 180.02562 * 20 19 17 22 22 C 1.37927 * 107.46086 * 0.02562 * 21 20 19 23 23 C 1.47296 * 125.89952 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99983 * 180.02562 * 23 22 21 25 25 O 1.21619 * 119.99892 * 0.02562 * 23 22 21 26 26 N 1.36756 * 108.20372 * 359.73653 * 22 21 20 27 27 H 0.96994 * 125.66557 * 180.28579 * 26 22 21 28 28 C 1.46921 * 120.63179 * 151.55434 * 9 7 2 29 29 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58735 * 353.36722 * 10 9 7 31 31 H 1.08997 * 109.58489 * 113.65402 * 10 9 7 32 32 H 1.08991 * 109.49849 * 65.31276 * 11 10 9 33 33 H 1.08996 * 109.49925 * 185.38719 * 11 10 9 34 34 H 1.08994 * 109.45907 * 181.38612 * 12 11 10 35 35 H 1.08997 * 109.46426 * 301.36111 * 12 11 10 36 36 H 1.09006 * 109.47096 * 305.00374 * 15 13 12 37 37 H 1.08998 * 109.47035 * 64.99623 * 15 13 12 38 38 H 0.97000 * 120.00045 * 359.97438 * 16 15 13 39 39 H 1.08002 * 126.26845 * 0.02592 * 20 19 17 40 40 H 1.07997 * 126.26840 * 180.02562 * 21 20 19 41 41 H 0.96995 * 120.00293 * 359.97438 * 24 23 22 42 42 H 0.97003 * 119.99847 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.58770 * 246.20234 * 28 9 7 44 44 H 1.08999 * 109.58848 * 6.62647 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3398 1.2681 11 6 0.4977 -3.3190 2.4146 12 6 0.8120 -4.7007 1.8364 13 6 2.0674 -4.6173 0.9649 14 1 2.9024 -4.2536 1.5637 15 6 2.4001 -6.0055 0.4145 16 7 3.6661 -5.9489 -0.3204 17 6 4.1608 -7.0621 -0.8972 18 8 3.5565 -8.1135 -0.8072 19 6 5.4334 -7.0050 -1.6366 20 6 6.0483 -8.0641 -2.2714 21 6 7.2247 -7.5825 -2.8447 22 6 7.3085 -6.2377 -2.5497 23 6 8.3937 -5.3297 -2.9591 24 7 8.3555 -4.0304 -2.6030 25 8 9.3241 -5.7525 -3.6184 26 7 6.2074 -5.8918 -1.8161 27 1 6.0092 -5.0047 -1.4777 28 6 1.8102 -3.6521 -0.2023 29 1 -0.4850 0.8400 -0.0004 30 1 0.0995 -1.3341 1.6688 31 1 -0.6774 -2.6379 0.7364 32 1 1.3475 -2.9675 2.9996 33 1 -0.3826 -3.3835 3.0541 34 1 0.9814 -5.4051 2.6507 35 1 -0.0281 -5.0407 1.2309 36 1 2.4904 -6.7116 1.2401 37 1 1.6048 -6.3307 -0.2561 38 1 4.1480 -5.1101 -0.3925 39 1 5.6850 -9.0802 -2.3163 40 1 7.9392 -8.1572 -3.4152 41 1 7.6133 -3.6932 -2.0775 42 1 9.0703 -3.4326 -2.8722 43 1 1.0336 -4.0575 -0.8509 44 1 2.7289 -3.5126 -0.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023592656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:32 Heat of formation + Delta-G solvation = -21.590424 kcal Electronic energy + Delta-G solvation = -26632.256872 eV Core-core repulsion = 22778.123188 eV Total energy + Delta-G solvation = -3854.133684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81937 -39.69860 -38.92103 -37.83059 -35.05639 -34.20816 -33.18895 -31.51601 -30.73155 -30.55874 -29.61672 -25.96084 -25.39621 -24.04121 -22.30832 -21.78745 -21.14691 -20.66799 -20.26672 -19.57509 -18.96211 -17.56372 -17.12004 -16.75038 -15.91481 -15.81514 -15.25590 -15.02902 -14.83274 -14.45548 -14.35067 -14.10287 -13.87776 -13.58863 -13.52332 -12.98561 -12.97636 -12.91971 -12.45837 -12.34487 -12.29160 -11.42555 -11.14157 -10.85582 -10.74987 -10.62468 -10.37507 -10.32149 -10.24319 -10.18912 -10.04338 -9.71406 -9.54320 -9.43378 -9.21804 -8.62565 -8.58858 -6.80095 -5.91526 -3.35713 0.72375 1.91427 2.46486 2.96705 2.99551 3.03431 3.16245 3.26060 3.33066 3.35638 4.35349 4.45649 4.52684 4.89841 4.93939 5.01474 5.16331 5.30134 5.32614 5.49001 5.56989 5.70850 5.79121 5.81193 5.86004 6.09109 6.10733 6.17132 6.24009 6.27491 6.32428 6.45086 6.47386 6.58072 6.63677 6.70214 6.74133 6.82097 6.92145 7.28585 7.31667 7.56062 7.65124 7.76077 7.97346 8.31488 9.07488 9.70962 10.27988 11.16451 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003471 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.445091 B = 8065.793955 C =10316.849660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.119 4.119 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.721 5.721 17 C 0.583 3.417 18 O -0.524 6.524 19 C -0.004 4.004 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.026 4.026 23 C 0.594 3.406 24 N -0.853 5.853 25 O -0.527 6.527 26 N -0.521 5.521 27 H 0.418 0.582 28 C 0.154 3.846 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.396 0.604 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.399 0.601 42 H 0.410 0.590 43 H 0.020 0.980 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -10.190 -0.141 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.372 5.372 17 C 0.368 3.632 18 O -0.399 6.399 19 C -0.122 4.122 20 C -0.150 4.150 21 C -0.143 4.143 22 C -0.143 4.143 23 C 0.379 3.621 24 N -0.416 5.416 25 O -0.403 6.403 26 N -0.120 5.120 27 H 0.256 0.744 28 C 0.027 3.973 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.230 0.770 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.227 0.773 42 H 0.242 0.758 43 H 0.038 0.962 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.712 -11.062 -0.442 15.404 hybrid contribution 0.366 2.315 0.312 2.364 sum 11.077 -8.747 -0.131 14.115 Atomic orbital electron populations 1.70040 1.05306 1.25546 1.53362 1.25058 0.95266 0.98449 1.00630 0.86255 0.79200 0.84017 0.77410 1.20360 1.21660 1.21466 1.19141 0.92390 0.84824 1.42377 0.91855 1.44049 1.36055 1.01313 1.49940 1.20805 0.88525 0.98351 0.88048 1.22163 1.00178 0.95892 0.99816 1.21338 0.96632 0.97832 0.97972 1.22058 0.99010 0.93419 0.99449 0.90869 1.21555 0.84173 0.98354 0.95573 1.45987 1.25310 1.10984 1.54908 1.17169 0.83054 0.84273 0.78655 1.90835 1.59235 1.29540 1.60335 1.20750 0.95578 0.87728 1.08170 1.21314 0.95119 0.98790 0.99813 1.21309 0.98673 0.91875 1.02441 1.20498 0.91375 0.96250 1.06138 1.17161 0.84423 0.81535 0.78960 1.43746 1.29001 1.10384 1.58497 1.90884 1.34358 1.76085 1.38930 1.41983 1.17767 1.10592 1.41609 0.74380 1.20977 0.97348 0.87001 0.91960 0.93544 0.89565 0.96355 0.92755 0.93080 0.93321 0.92354 0.91484 0.91083 0.76986 0.82466 0.82552 0.77320 0.75771 0.96179 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 11.20 55.49 0.62 -24.28 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 20.35 29.59 -169.99 -5.03 15.32 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.51 9.58 -15.06 -0.14 -6.65 16 8 H 0.06 1.53 7.89 -52.49 -0.41 1.12 16 9 N -0.59 -13.53 2.99 -172.05 -0.51 -14.04 16 10 C 0.17 3.76 5.30 -3.71 -0.02 3.74 16 11 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 12 C -0.10 -1.50 5.17 -26.68 -0.14 -1.63 16 13 C -0.12 -1.73 2.38 -90.27 -0.22 -1.95 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.13 1.63 5.07 -4.05 -0.02 1.61 16 16 N -0.72 -8.27 5.33 -61.43 -0.33 -8.60 16 17 C 0.58 7.47 7.81 -12.58 -0.10 7.37 16 18 O -0.52 -8.44 16.87 5.27 0.09 -8.36 16 19 C 0.00 -0.05 7.04 -82.10 -0.58 -0.63 16 20 C -0.12 -1.33 10.60 -39.24 -0.42 -1.75 16 21 C -0.12 -1.19 10.60 -39.25 -0.42 -1.61 16 22 C -0.03 -0.25 7.04 -82.10 -0.58 -0.83 16 23 C 0.59 5.99 8.08 -12.58 -0.10 5.89 16 24 N -0.85 -5.36 8.87 30.40 0.27 -5.09 16 25 O -0.53 -7.24 17.71 5.26 0.09 -7.15 16 26 N -0.52 -4.39 5.90 -5.89 -0.03 -4.43 16 27 H 0.42 2.39 7.34 -40.82 -0.30 2.09 16 28 C 0.15 2.81 5.63 -3.49 -0.02 2.79 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 3.77 6.82 -40.82 -0.28 3.50 16 39 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.40 1.59 7.93 -40.82 -0.32 1.27 16 42 H 0.41 2.12 8.93 -40.82 -0.36 1.76 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.79 7.16 -51.93 -0.37 0.42 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -33.10 364.90 -8.48 -41.57 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.15 Total: 5.78 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.99 Total: 3.76 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.01 Total: -56.44 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.18 Total: -15.50 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.10 -8.48 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023592656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.985 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds