Wall clock time and date at job start Tue Mar 31 2020 12:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48498 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47269 * 300.00096 * 3 2 1 6 6 H 1.48497 * 109.46750 * 59.99866 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 163.07530 * 7 2 1 9 9 N 1.36942 * 120.00133 * 343.07682 * 7 2 1 10 10 C 1.46930 * 120.62512 * 331.83769 * 9 7 2 11 11 C 1.53197 * 108.77229 * 233.58453 * 10 9 7 12 12 C 1.53043 * 109.31048 * 305.36329 * 11 10 9 13 13 C 1.53047 * 109.53907 * 61.36745 * 12 11 10 14 14 H 1.09002 * 109.49337 * 58.58454 * 13 12 11 15 15 C 1.52994 * 109.50007 * 178.64951 * 13 12 11 16 16 N 1.46499 * 109.47177 * 185.00178 * 15 13 12 17 17 C 1.34779 * 119.99826 * 180.02562 * 16 15 13 18 18 O 1.21605 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.47292 * 119.99645 * 179.97438 * 17 16 15 20 20 C 1.37936 * 125.90014 * 180.02562 * 19 17 16 21 21 C 1.39443 * 107.46213 * 180.02562 * 20 19 17 22 22 C 1.37927 * 107.46086 * 0.02562 * 21 20 19 23 23 C 1.47296 * 125.89952 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99983 * 180.02562 * 23 22 21 25 25 O 1.21619 * 119.99892 * 0.02562 * 23 22 21 26 26 N 1.36756 * 108.20372 * 359.73653 * 22 21 20 27 27 H 0.96994 * 125.66557 * 180.28579 * 26 22 21 28 28 C 1.46921 * 120.63179 * 151.55434 * 9 7 2 29 29 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58735 * 353.36722 * 10 9 7 31 31 H 1.08997 * 109.58489 * 113.65402 * 10 9 7 32 32 H 1.08991 * 109.49849 * 65.31276 * 11 10 9 33 33 H 1.08996 * 109.49925 * 185.38719 * 11 10 9 34 34 H 1.08994 * 109.45907 * 181.38612 * 12 11 10 35 35 H 1.08997 * 109.46426 * 301.36111 * 12 11 10 36 36 H 1.09006 * 109.47096 * 305.00374 * 15 13 12 37 37 H 1.08998 * 109.47035 * 64.99623 * 15 13 12 38 38 H 0.97000 * 120.00045 * 359.97438 * 16 15 13 39 39 H 1.08002 * 126.26845 * 0.02592 * 20 19 17 40 40 H 1.07997 * 126.26840 * 180.02562 * 21 20 19 41 41 H 0.96995 * 120.00293 * 359.97438 * 24 23 22 42 42 H 0.97003 * 119.99847 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.58770 * 246.20234 * 28 9 7 44 44 H 1.08999 * 109.58848 * 6.62647 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3398 1.2681 11 6 0.4977 -3.3190 2.4146 12 6 0.8120 -4.7007 1.8364 13 6 2.0674 -4.6173 0.9649 14 1 2.9024 -4.2536 1.5637 15 6 2.4001 -6.0055 0.4145 16 7 3.6661 -5.9489 -0.3204 17 6 4.1608 -7.0621 -0.8972 18 8 3.5565 -8.1135 -0.8072 19 6 5.4334 -7.0050 -1.6366 20 6 6.0483 -8.0641 -2.2714 21 6 7.2247 -7.5825 -2.8447 22 6 7.3085 -6.2377 -2.5497 23 6 8.3937 -5.3297 -2.9591 24 7 8.3555 -4.0304 -2.6030 25 8 9.3241 -5.7525 -3.6184 26 7 6.2074 -5.8918 -1.8161 27 1 6.0092 -5.0047 -1.4777 28 6 1.8102 -3.6521 -0.2023 29 1 -0.4850 0.8400 -0.0004 30 1 0.0995 -1.3341 1.6688 31 1 -0.6774 -2.6379 0.7364 32 1 1.3475 -2.9675 2.9996 33 1 -0.3826 -3.3835 3.0541 34 1 0.9814 -5.4051 2.6507 35 1 -0.0281 -5.0407 1.2309 36 1 2.4904 -6.7116 1.2401 37 1 1.6048 -6.3307 -0.2561 38 1 4.1480 -5.1101 -0.3925 39 1 5.6850 -9.0802 -2.3163 40 1 7.9392 -8.1572 -3.4152 41 1 7.6133 -3.6932 -2.0775 42 1 9.0703 -3.4326 -2.8722 43 1 1.0336 -4.0575 -0.8509 44 1 2.7289 -3.5126 -0.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023592656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:31 Heat of formation + Delta-G solvation = -46.994169 kcal Electronic energy + Delta-G solvation = -26633.358461 eV Core-core repulsion = 22778.123188 eV Total energy + Delta-G solvation = -3855.235273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.62763 -40.68439 -39.84365 -39.20368 -36.35217 -34.93535 -34.73231 -32.49489 -32.28072 -31.85838 -30.57609 -27.30835 -27.01685 -24.98760 -23.81651 -22.90728 -22.29567 -21.52958 -21.17201 -20.75410 -20.00655 -18.67275 -18.28475 -17.82583 -16.97660 -16.85189 -16.71779 -16.20549 -15.86351 -15.68596 -15.44387 -15.14403 -15.04094 -14.97526 -14.56704 -14.49184 -14.05432 -13.82324 -13.75937 -13.68358 -13.55298 -13.00098 -12.89967 -12.52766 -12.23695 -11.94875 -11.82569 -11.69318 -11.56555 -11.41758 -11.15004 -11.06168 -10.87479 -10.53635 -10.25559 -10.18932 -9.44559 -8.66901 -7.85899 -5.32265 -0.10949 1.06415 1.46933 1.49648 1.58560 1.68134 2.02730 2.19869 2.24154 2.38807 2.51364 3.29885 3.57926 3.68865 3.82576 3.98575 4.01409 4.05768 4.15530 4.21323 4.42058 4.56819 4.62162 4.76589 4.77408 4.88050 4.90918 5.00516 5.05213 5.12054 5.18326 5.30142 5.34037 5.37085 5.45285 5.58359 5.65757 5.67983 5.74500 5.79763 6.03033 6.29579 6.38768 6.41719 7.00893 7.09635 7.15523 7.87135 8.39605 9.20389 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003471 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.445091 B = 8065.793955 C =10316.849660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.258 4.258 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.081 0.919 15 C 0.136 3.864 16 N -0.712 5.712 17 C 0.587 3.413 18 O -0.560 6.560 19 C -0.015 4.015 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.021 4.021 23 C 0.594 3.406 24 N -0.832 5.832 25 O -0.568 6.568 26 N -0.503 5.503 27 H 0.432 0.568 28 C 0.151 3.849 29 H 0.247 0.753 30 H 0.050 0.950 31 H -0.010 1.010 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.407 0.593 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.413 0.587 42 H 0.419 0.581 43 H 0.005 0.995 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -10.530 0.607 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.388 4.388 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.136 4.136 13 C -0.121 4.121 14 H 0.100 0.900 15 C 0.013 3.987 16 N -0.363 5.363 17 C 0.374 3.626 18 O -0.439 6.439 19 C -0.133 4.133 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.139 4.139 23 C 0.380 3.620 24 N -0.396 5.396 25 O -0.447 6.447 26 N -0.102 5.102 27 H 0.273 0.727 28 C 0.025 3.975 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.243 0.757 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.243 0.757 42 H 0.252 0.748 43 H 0.023 0.977 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.497 -11.356 0.336 16.889 hybrid contribution -0.193 2.421 0.046 2.429 sum 12.304 -8.935 0.383 15.211 Atomic orbital electron populations 1.70206 1.06895 1.25629 1.55655 1.25811 0.95902 1.01584 1.01479 0.85267 0.79072 0.80076 0.76374 1.18213 1.22533 1.22276 1.19604 0.93065 0.85702 1.40475 0.90551 1.44325 1.35894 1.02390 1.50556 1.20628 0.87738 0.97729 0.89311 1.21986 1.00939 0.95971 0.97954 1.21340 0.96623 0.96716 0.98935 1.21812 0.99180 0.93286 0.97789 0.90044 1.21372 0.84456 0.97118 0.95799 1.45859 1.24852 1.11278 1.54330 1.17295 0.83224 0.83828 0.78261 1.90820 1.60397 1.30865 1.61785 1.20470 0.95380 0.88593 1.08894 1.21462 0.95212 0.99146 0.99616 1.21472 0.98791 0.92370 1.02781 1.20516 0.91435 0.96224 1.05772 1.17182 0.83825 0.82427 0.78597 1.43596 1.29484 1.09177 1.57320 1.90871 1.35839 1.76998 1.40991 1.41831 1.16810 1.10772 1.40799 0.72739 1.21141 0.97244 0.85739 0.93357 0.94343 0.93185 0.99141 0.92663 0.91521 0.90078 0.92729 0.90320 0.92012 0.75678 0.82149 0.81954 0.75689 0.74800 0.97712 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.51 11.20 21.65 0.24 -53.26 16 2 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 3 Si 0.96 41.85 29.59 68.60 2.03 43.88 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.30 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.26 -12.85 9.58 84.03 0.81 -12.04 16 8 H 0.08 3.52 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -27.59 2.99 -698.26 -2.09 -29.68 16 10 C 0.17 7.78 5.30 86.36 0.46 8.24 16 11 C -0.13 -4.34 6.08 30.67 0.19 -4.15 16 12 C -0.10 -2.68 5.17 30.62 0.16 -2.52 16 13 C -0.10 -2.66 2.38 -10.57 -0.03 -2.68 16 14 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 15 C 0.14 3.13 5.07 86.38 0.44 3.57 16 16 N -0.71 -14.44 5.33 -466.52 -2.49 -16.93 16 17 C 0.59 13.92 7.81 86.62 0.68 14.60 16 18 O -0.56 -17.37 16.87 -4.05 -0.07 -17.43 16 19 C -0.02 -0.30 7.04 40.69 0.29 -0.02 16 20 C -0.13 -2.58 10.60 22.49 0.24 -2.34 16 21 C -0.13 -2.46 10.60 22.49 0.24 -2.22 16 22 C -0.02 -0.38 7.04 40.69 0.29 -0.09 16 23 C 0.59 10.91 8.08 86.63 0.70 11.61 16 24 N -0.83 -8.29 8.87 -175.97 -1.56 -9.85 16 25 O -0.57 -15.06 17.71 -4.09 -0.07 -15.14 16 26 N -0.50 -7.23 5.90 -172.55 -1.02 -8.25 16 27 H 0.43 3.53 7.34 -92.71 -0.68 2.85 16 28 C 0.15 5.28 5.63 86.51 0.49 5.77 16 29 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.05 2.62 6.06 -2.39 -0.01 2.60 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.41 6.43 6.82 -92.71 -0.63 5.79 16 39 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 41 H 0.41 1.93 7.93 -92.71 -0.74 1.20 16 42 H 0.42 3.28 8.93 -92.71 -0.83 2.45 16 43 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 44 H 0.06 1.92 7.16 -2.39 -0.02 1.90 16 Total: -1.00 -72.96 364.90 -1.47 -74.43 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -1.80 Total: 16.86 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.35 Total: 15.36 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -6.91 Total: -117.97 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.14 Total: -32.57 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -72.96 -1.47 -74.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023592656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.439 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds