Wall clock time and date at job start Tue Mar 31 2020 12:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48494 * 109.47415 * 240.00519 * 3 2 1 5 5 H 1.48506 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46821 * 120.00079 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00702 * 197.35409 * 7 2 1 9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1 10 10 C 1.46917 * 120.63334 * 27.67797 * 9 7 2 11 11 C 1.53195 * 108.77632 * 126.41102 * 10 9 7 12 12 C 1.53033 * 109.31118 * 54.63683 * 11 10 9 13 13 C 1.53039 * 109.52816 * 298.64429 * 12 11 10 14 14 H 1.09006 * 109.49478 * 301.40060 * 13 12 11 15 15 C 1.53002 * 109.49860 * 181.31222 * 13 12 11 16 16 N 1.46496 * 109.47305 * 174.99868 * 15 13 12 17 17 C 1.34779 * 119.99949 * 179.97438 * 16 15 13 18 18 O 1.21609 * 119.99922 * 359.97438 * 17 16 15 19 19 C 1.47296 * 119.99546 * 179.97438 * 17 16 15 20 20 C 1.37936 * 125.89623 * 179.69235 * 19 17 16 21 21 C 1.39447 * 107.45871 * 179.84422 * 20 19 17 22 22 C 1.37931 * 107.46185 * 0.41446 * 21 20 19 23 23 C 1.47292 * 125.89866 * 179.76429 * 22 21 20 24 24 N 1.34779 * 120.00199 * 179.97438 * 23 22 21 25 25 O 1.21618 * 120.00266 * 359.97175 * 23 22 21 26 26 N 1.36750 * 108.19772 * 359.74420 * 22 21 20 27 27 H 0.97005 * 125.65634 * 180.02562 * 26 22 21 28 28 C 1.46923 * 120.62817 * 207.70224 * 9 7 2 29 29 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58578 * 6.62816 * 10 9 7 31 31 H 1.08995 * 109.70784 * 246.27193 * 10 9 7 32 32 H 1.08997 * 109.49831 * 294.68569 * 11 10 9 33 33 H 1.08996 * 109.49623 * 174.59381 * 11 10 9 34 34 H 1.09006 * 109.46002 * 58.65815 * 12 11 10 35 35 H 1.09003 * 109.45981 * 178.62730 * 12 11 10 36 36 H 1.09000 * 109.46692 * 294.99840 * 15 13 12 37 37 H 1.08998 * 109.47300 * 54.99383 * 15 13 12 38 38 H 0.96999 * 119.99831 * 359.97438 * 16 15 13 39 39 H 1.07999 * 126.27069 * 359.97438 * 20 19 17 40 40 H 1.07998 * 126.26523 * 180.16455 * 21 20 19 41 41 H 0.97005 * 119.99424 * 359.97438 * 24 23 22 42 42 H 0.97000 * 120.00427 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.59196 * 353.37295 * 28 9 7 44 44 H 1.08995 * 109.58955 * 113.65893 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0535 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2754 11 6 0.5006 -3.3037 -2.4296 12 6 0.8185 -4.6890 -1.8624 13 6 2.0741 -4.6092 -0.9911 14 1 2.9080 -4.2391 -1.5877 15 6 2.4101 -6.0007 -0.4508 16 7 3.6764 -5.9466 0.2838 17 6 4.1738 -7.0628 0.8524 18 8 3.5711 -8.1147 0.7560 19 6 5.4473 -7.0085 1.5905 20 6 6.0620 -8.0697 2.2219 21 6 7.2409 -7.5911 2.7925 22 6 7.3214 -6.2439 2.5078 23 6 8.4049 -5.3366 2.9230 24 7 8.3634 -4.0347 2.5770 25 8 9.3370 -5.7623 3.5781 26 7 6.2216 -5.8962 1.7732 27 1 6.0237 -5.0080 1.4371 28 6 1.8193 -3.6546 0.1792 29 1 -0.4850 0.8400 0.0004 30 1 0.0985 -1.3255 -1.6684 31 1 -0.6757 -2.6391 -0.7477 32 1 1.3491 -2.9458 -3.0127 33 1 -0.3802 -3.3656 -3.0687 34 1 -0.0206 -5.0357 -1.2591 35 1 0.9891 -5.3868 -2.6822 36 1 1.6159 -6.3321 0.2181 37 1 2.5014 -6.7007 -1.2813 38 1 4.1569 -5.1076 0.3610 39 1 5.6981 -9.0856 2.2646 40 1 7.9575 -8.1687 3.3576 41 1 7.6201 -3.6953 2.0543 42 1 9.0771 -3.4372 2.8501 43 1 2.7400 -3.5176 0.7462 44 1 1.0480 -4.0678 0.8292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023592657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:36 Heat of formation + Delta-G solvation = -21.275600 kcal Electronic energy + Delta-G solvation = -26633.802194 eV Core-core repulsion = 22779.682162 eV Total energy + Delta-G solvation = -3854.120032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82075 -39.70171 -38.92498 -37.84658 -35.05813 -34.20814 -33.19038 -31.51712 -30.73921 -30.55983 -29.62151 -25.96441 -25.39600 -24.04162 -22.31231 -21.79073 -21.14722 -20.66820 -20.26809 -19.57249 -18.96028 -17.56557 -17.12129 -16.74992 -15.91777 -15.81496 -15.25740 -15.02450 -14.83262 -14.45849 -14.35061 -14.10731 -13.88432 -13.58772 -13.52359 -12.98547 -12.97714 -12.91909 -12.45894 -12.34693 -12.28981 -11.43369 -11.13276 -10.82908 -10.75014 -10.64412 -10.39200 -10.31794 -10.25039 -10.18949 -10.03676 -9.70837 -9.55380 -9.43419 -9.21994 -8.62554 -8.57944 -6.80722 -5.91100 -3.34594 0.72318 1.91358 2.46392 2.96553 2.99458 3.03415 3.16157 3.26665 3.33486 3.34802 4.35789 4.45575 4.52545 4.89553 4.93901 5.01244 5.16510 5.30122 5.32306 5.49131 5.56930 5.70846 5.79069 5.81294 5.86283 6.08771 6.10598 6.17257 6.24477 6.27348 6.32408 6.45110 6.47353 6.58128 6.63695 6.70113 6.74150 6.82209 6.92041 7.28644 7.31506 7.55814 7.64931 7.76036 7.97221 8.31600 9.07775 9.71424 10.28153 11.17022 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.003470 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.303999 B = 8067.106392 C =10316.619964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.721 5.721 17 C 0.583 3.417 18 O -0.524 6.524 19 C -0.004 4.004 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.026 4.026 23 C 0.594 3.406 24 N -0.853 5.853 25 O -0.527 6.527 26 N -0.521 5.521 27 H 0.418 0.582 28 C 0.154 3.846 29 H 0.256 0.744 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.399 0.601 42 H 0.410 0.590 43 H 0.046 0.954 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -10.149 0.069 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.372 5.372 17 C 0.369 3.631 18 O -0.399 6.399 19 C -0.122 4.122 20 C -0.150 4.150 21 C -0.143 4.143 22 C -0.143 4.143 23 C 0.379 3.621 24 N -0.416 5.416 25 O -0.403 6.403 26 N -0.119 5.119 27 H 0.256 0.744 28 C 0.027 3.973 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.227 0.773 42 H 0.242 0.758 43 H 0.064 0.936 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 10.687 -11.017 0.368 15.353 hybrid contribution 0.394 2.307 -0.302 2.359 sum 11.080 -8.710 0.066 14.094 Atomic orbital electron populations 1.70019 1.05302 1.25786 1.53178 1.25033 0.95255 0.98421 1.00655 0.86394 0.78985 0.83443 0.78032 1.21009 1.21528 1.20931 1.19064 0.92520 0.84929 1.42346 0.91921 1.44019 1.35916 1.01078 1.50306 1.20806 0.88499 0.98484 0.87948 1.22168 1.00175 0.95864 0.99877 1.21339 0.96614 0.97845 0.97980 1.21973 0.99031 0.93402 0.99499 0.90876 1.21555 0.84165 0.98327 0.95600 1.45987 1.25283 1.10791 1.55136 1.17170 0.83049 0.84278 0.78650 1.90836 1.59370 1.29598 1.60139 1.20747 0.95537 0.87749 1.08195 1.21315 0.95052 0.98780 0.99886 1.21312 0.98644 0.91833 1.02511 1.20495 0.91429 0.96174 1.06161 1.17160 0.84416 0.81557 0.78944 1.43748 1.28997 1.10155 1.58732 1.90884 1.34203 1.76084 1.39085 1.41981 1.17868 1.10560 1.41536 0.74383 1.20877 0.97340 0.87020 0.92040 0.93432 0.89514 0.96379 0.92759 0.93073 0.92346 0.93309 0.91071 0.91471 0.76986 0.82465 0.82552 0.77322 0.75769 0.93559 0.96219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.92 11.19 55.49 0.62 -24.30 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 3 Si 0.90 20.36 29.59 -169.99 -5.03 15.33 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.26 -6.55 9.58 -15.06 -0.14 -6.69 16 8 H 0.06 1.51 7.89 -52.49 -0.41 1.10 16 9 N -0.59 -13.54 2.99 -172.35 -0.52 -14.06 16 10 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 11 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16 12 C -0.10 -1.50 5.17 -26.69 -0.14 -1.63 16 13 C -0.12 -1.73 2.37 -90.51 -0.21 -1.95 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.13 1.63 5.07 -4.04 -0.02 1.61 16 16 N -0.72 -8.27 5.33 -61.43 -0.33 -8.60 16 17 C 0.58 7.47 7.81 -12.58 -0.10 7.37 16 18 O -0.52 -8.44 16.87 5.27 0.09 -8.36 16 19 C 0.00 -0.05 7.04 -82.10 -0.58 -0.63 16 20 C -0.12 -1.33 10.60 -39.24 -0.42 -1.75 16 21 C -0.12 -1.19 10.60 -39.24 -0.42 -1.61 16 22 C -0.03 -0.25 7.04 -82.11 -0.58 -0.83 16 23 C 0.59 5.99 8.08 -12.58 -0.10 5.89 16 24 N -0.85 -5.35 8.87 30.40 0.27 -5.09 16 25 O -0.53 -7.24 17.71 5.26 0.09 -7.15 16 26 N -0.52 -4.39 5.90 -5.89 -0.03 -4.43 16 27 H 0.42 2.38 7.34 -40.82 -0.30 2.08 16 28 C 0.15 2.82 5.60 -3.73 -0.02 2.80 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.09 2.20 6.04 -51.93 -0.31 1.88 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.77 6.80 -40.82 -0.28 3.50 16 39 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.40 1.59 7.93 -40.82 -0.32 1.26 16 42 H 0.41 2.12 8.93 -40.82 -0.36 1.76 16 43 H 0.05 0.78 7.14 -51.93 -0.37 0.41 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -33.10 364.80 -8.48 -41.58 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.15 Total: 5.83 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.99 Total: 3.73 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.01 Total: -56.47 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.18 Total: -15.50 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.10 -8.48 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023592657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.301 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds